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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0641900 |
| Transcript ID | LotjaGi1g1v0641900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Programmed cell death protein 2; TAIR: AT4G02220.1 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein; Swiss-Prot: sp|Q16342|PDCD2_HUMAN Programmed cell death protein 2; TrEMBL-Plants: tr|C6TKD7|C6TKD7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0641900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119946200..119951126) extracted from Lotus japonicus Gifu genome v1.2.
CCTTAACCGTCGTCCACCACCTCCATTGAAGCTCTAATCAATCCTTCAAGCTAAAGCTCCAAACTTTATCAGGTACCCTA TTCCCTCTTCGGCATCAAGATTATTTTTTTAGTCATACAAATAAAGCTGTGTCACATGAGAATTGTGTACCTACTTGATA CTTGAAATGTAGATGTATGCTTGCTCTTTTTGCCACCTTCTTCAAATTAATTATTAGTTGTATTGAACTATGTTTATGAT CATGTGGAGCCTTAAAACTTCATATTTGTATTAAGTAATGATGTTCTTATTGATCATGGTGGATCACATGAACCACCTGC AATGCAAGCCAGTCTACCTCTTAATTTTCTGCTATTGTCATTTATTCTATGTCTAGCTGTCTTGCAATATTGCATTTTCA GGCTGAAATTATATATGTAAATTTTCATATTTCCAGTTATTTAATTGTAGCTTAATATGCTTTGCTATGAACTATTTCGT GATATGGTTTTTTCTTATTTCCTTTAGTATCTGGTTTTTCAGTTCAATTGCTTGACCAGTAGTTAGACTACTCTACCCAG TGACCCAGCCTTCTAACCGGAGCAATCTCTATTCTCTAGTGTGGGTTGTACAACCATCACTAGAGCTCTATGCAATAACT GCACCATCACTCTCTAAAAGACTAGCATTTTGTATACCATTGCCGCATACATGGACACTGCAGATGCTGTTGGAGATCAT GTCAAGATGATTGAGGCGATCCGAATTGATGATGATGATGATGATTGTGATGGAGATGAAAATGATGATTTTGAAGATTA TGATGATGATGATGATGAAAAGCCTGAAATCGGTTTGGCTTTCGAGCCCGAGAATCAATGGTCACTTTGCCGTCAATATT TTCCAAGCAAAGCTGGAGGAATCCCGGTACTCTACCTTCTCATTAAATTCTTTTGCCCCTTGCTTCTGTCTTGCTTTATT CAATGTGGTGTGAAAAACAGGCTTGGCTTGATCCTTTGAATATACCATCAGGGAGGTCATCTGTGTGCGACATTTGTGGA GACCCTTTACTATTCCTGCTTCAGGTAGCTAATGCCTCATCCTTTTATTTGATGTGCATATGGTTTGTCTTGTATTTGTG AATCATGATAAATTTTATACAACCCTTGAACTACTAGGTCTATGCACCAATTGTTGAGGAGAAATGTGAAAATACATTTC ACCGGATGCTGTTTGTTTTCATGTGTCCTTCCATGACATGTCTTCTTAGGGATCAGCATGAGCAATGTAAACGTCATCCG GAAAGACCATCTAGAAGGTCGGTGATCTTCCTCTGTGATACAAAGTTTTCCATTCTTTTTTACTTCCTTTGACTGTTGAT ATCTGATTGTGTAATGATTTATTGAAGTGTGAAGGTTTTCCGTTGTCAGCTACCTCGTGTCAATCCGTTTTACTCAAGCA AACACCCTACGAATGATGGAAGTCAAAAACCTGCTGGCAGTGGAGGTTGGTGCTTATACTCTCAGAAACATAGTCCTATT TTACAAATATTTGTTGGGACCATTTGTATAAATTTCTTTTTTCTGAGATTTACAAATGTTTTTGGACACACAAAATAGGG TAATTTGTTTTCAGCTACTACAAGCTGTTCACCTTGAGGACAAGGTGAAACTTTTTCAGGGGTATTGTTAGACAACTGTT AGGGACTGTGTTAGGATTCAATTGCAAGGGATAGGACTTGGGTCCTATGTTGGAAGTATGGGATTTTTTCTAGTGTGGGT TTTATAAGACCTTGGGCTCTTGTTGTATGGTTCCAAGGTTCTTATCGACTGTTAGAAGAAACAGTTAGAAGAAATCAGGC AGGTTGCCTGTAATTAAGAGGAGGGGATGAGAGGGAGAGATATCTAGTCATTTGAGTGAGAATTAGGGCCTTTGGGCAGG AGGTTTGCAGACCCTTGAAGCTCTGCAGTGGACTACCTTTTGCAATTGGGGTTTATCCCTATTTATTTCCAAGAAAATTT CAAGTTTCTATCAACTGGTACCAGAGCTCCAATCTTGGAGTTGTGGGTATTACATCTTCAAGTTGGTCCATGAATGTTCA AGGCTTCAGTGAGAATGAAGAAACACATAATTACATGTCCTAATTACATTCTCAAAGAACGAAGGAAAGAGCTTGAGGTT TGAGAAGGGAACTCAAGGAGGAACATATGGAGATACCAACATTTGAAGGACAAAAGGAGAGGAATGTTACACTAGATATG CGACATGTGAGAGGACATATTCTCACTAGGTATGCGAGATGGGGTTGGAGCAACCTAACATGACAAGATGGGTCTTCTTG AAGGTATTGATCTAGTAGTTCAAGCCAAAGTATGATCCAGAATTGCTAAGCAGAAGCTGTCTTGGAATTAGAATTAGTGG TATCTCAGGATGATTCCAATGTATGTTAGGTAGATTTCAGCAAAGGGAAAAGAGGGACACATGGAGAATGGAGAGGGAAG GCAGTTATGCTAAGTGGCAACCAGGAGGAGAGCGGAGAATGAGAGTTGGTAGGAAATAGGAATAGGAGAAGGTGGGGGTG AATCTGGGGGATATTCTGATATTTTGGAATTATTTGATTTCAGCCTTGGGATCGGGCAGGAATTTAGCTAGCGCTCAGTA GCTACTTCTTTTGTTCCTCCTATTTTCTCTTGCTGCTGTAGTTATATTCTGCACTTTTGAGTATCAAATGGCATACATTC TCCTTGGTGTGATTTTCTTTTCTGCTTTGTATCACTTTCAGCCGCACTTTGTGATTGGTGTGGTACCTGGAAAGGAGATA AGCTCTGTAGTAGTTGCAAGCAAGTGCGGTATTGCTCAGAGAAGCATCAGGTAACCAAATTGCTCAAATGTGTCAAATTC GATATCCTTTCACAAAATTGATTCCTATAACATCACATCATCAACTTACAGGTTATGAGTTGGCGCTCAGGGCATAAAAT TGCTTGCCAGCAGATGAAAGTTTCCTCACCTGTTTGTGGACCCAACAGAAGTGGAACCACCTCTTTGGAGTCTCATAAAG GTCACAGTGGTTTAAGAGCTGTATATTTTTGTGAGGTTTATTTGCTCATTGTTGAGAATGAAAATATGGCTAACTTCTAT AAAGTCAAAAAATGATAAATCTAATTATATTAGTGTTCATAAAATGTACACTGGTAACAGGACATTTAATTTGTATCTGG CTAAGAAACTTAAAACATGCTTGATGTCATTTTTGAATGAAACATACACTGGTCATTAGAATTAGAAGTTACTGTGCATA ATTGTATTATATCCTCTGATTTTGCTTCTTGATAGCTCACATCTGAGATCATGACTATACAGTTGGCAGCAGCAACTTTA TGTGGCCTGAATATGAGATCATCATTGGAGATGAAAGTGAATCTAACAGAGATGTATCCGAGGATAATACCTTACATAAT TCTTTGATCTTGAGGAATAGGATTGATGACTCAATGGATTCACTTATGGATAGCTTTCAGGTATTACCTCTCATTTTTAA TTAAGCTTACATTACTTATTGAAGTATATTATGTGCTAATTATATTGTCCATTAATAGGGTACTGATGATCAAAACAGTT GGACCAACTTTGTGGAATGCATTGCCGAAGCCCCTGAACAAGTATTGAGGTAATTAATATTTAGAAAATGTATGGTGCTT AATTGATTCAGTAAACTGGCTTATGTGCCCTTGCGTAGACAGATTATTTACTGAACTGAGTGGGATAAAATGTTTACCAT TAATCATCTTTCCTACAACAGCAACAACGAACAACTAAATCTCTTCTCTTTAAATAGGCTGGATTAAATGTATCATCATA ATTTCCTATGATGTATCAAGCTCAAAGATAGTTCTTTTAGCTTTACATGTCTATTGATGATTCAACTGTAGTTTATTTTG CATTAAAAAGAAGGAAGAATACCTGTTGCAATGCACTGTTTAATCTGAAAGTAATAAACCTTTTAGAATCTGCAATTTTT GCATGATCTGAAACGTCGATCCACGTTTGAGTCAACATGTCAAAATCTTACTTCTCCGGTGATGCATTTGGATGTGTTTT CCCGACACAAATTGGCACTTAGTTGTCCTCAAAATTACATTATAAAATGTGCATTGTATAGATAATCATATTTTGTGATG TGTGCTAAAAAAAGTTTTTCCATGTATAAAGTGACTAGTGTTATTTACTTTATCAATGAAATTTTGTTTAATTACAGTTT TGATGCTTCTGACATAAACAGGTATTATAGGAATACTAATGCTAAGCCAATATGGCCTGTTTCAAAGGGGAGGCCATCCA GAGCTGATATCCCTAAATGCAGTTATTGTGGTGGACCTATGTGTTGTGAATTTCAGGTAATTATATTAGTTATTTGAGAA ATCATTTTCTATAGCTGAATCTCATTCTACATGTACTACCATTTCTTTTGCTTGATCAAATTTTCTTAGCTCTTGTTTCC TTTAGATACTGAATTGTTAAATGTTGTTGTTGGTGCTAGATTTTGCCACAGTTGCTGCATTTCTTCAAGGTTGACAATGA AGCTGGCTCTTTGGATTGGGCTTCGATTGTGGTGTATGCATGCGAAGCCTCTTGCGATGCAAGTTTGCCATACAAACACG AATTTGCTTGGGTTCAACTTTATTAACTTCCCATTACCTAAAAGTCAATTTTTGGCTTTTACAATTTTGCTCAAAAGTAT TAAGATTTTTTTTCAGATTTGGTGGAAGAGGTAGGAATTTGTATAATTACTTCAAGATGTACCAAAAATAACAATAATTG AGGACTATGATAGGTGATTGAATAATTTATAGGCTTATGCTGTGTCCTTGTTGAAAGAATTTTTTTTTGCCCCTCTAAAA GAAATAGGTTTGTGTTTTATATATATATATATATATATTTGTTATTG
CDS sequence (LotjaGi1g1v0641900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACTGCAGATGCTGTTGGAGATCATGTCAAGATGATTGAGGCGATCCGAATTGATGATGATGATGATGATTGTGA TGGAGATGAAAATGATGATTTTGAAGATTATGATGATGATGATGATGAAAAGCCTGAAATCGGTTTGGCTTTCGAGCCCG AGAATCAATGGTCACTTTGCCGTCAATATTTTCCAAGCAAAGCTGGAGGAATCCCGGCTTGGCTTGATCCTTTGAATATA CCATCAGGGAGGTCATCTGTGTGCGACATTTGTGGAGACCCTTTACTATTCCTGCTTCAGGTCTATGCACCAATTGTTGA GGAGAAATGTGAAAATACATTTCACCGGATGCTGTTTGTTTTCATGTGTCCTTCCATGACATGTCTTCTTAGGGATCAGC ATGAGCAATGTAAACGTCATCCGGAAAGACCATCTAGAAGTGTGAAGGTTTTCCGTTGTCAGCTACCTCGTGTCAATCCG TTTTACTCAAGCAAACACCCTACGAATGATGGAAGTCAAAAACCTGCTGGCAGTGGAGCCGCACTTTGTGATTGGTGTGG TACCTGGAAAGGAGATAAGCTCTGTAGTAGTTGCAAGCAAGTGCGGTATTGCTCAGAGAAGCATCAGGTTATGAGTTGGC GCTCAGGGCATAAAATTGCTTGCCAGCAGATGAAAGTTTCCTCACCTGTTTGTGGACCCAACAGAAGTGGAACCACCTCT TTGGAGTCTCATAAAGTTGGCAGCAGCAACTTTATGTGGCCTGAATATGAGATCATCATTGGAGATGAAAGTGAATCTAA CAGAGATGTATCCGAGGATAATACCTTACATAATTCTTTGATCTTGAGGAATAGGATTGATGACTCAATGGATTCACTTA TGGATAGCTTTCAGGGTACTGATGATCAAAACAGTTGGACCAACTTTGTGGAATGCATTGCCGAAGCCCCTGAACAAGTA TTGAGGTATTATAGGAATACTAATGCTAAGCCAATATGGCCTGTTTCAAAGGGGAGGCCATCCAGAGCTGATATCCCTAA ATGCAGTTATTGTGGTGGACCTATGTGTTGTGAATTTCAGATTTTGCCACAGTTGCTGCATTTCTTCAAGGTTGACAATG AAGCTGGCTCTTTGGATTGGGCTTCGATTGTGGTGTATGCATGCGAAGCCTCTTGCGATGCAAGTTTGCCATACAAACAC GAATTTGCTTGGGTTCAACTTTATTAA
Protein sequence (LotjaGi1g1v0641900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTADAVGDHVKMIEAIRIDDDDDDCDGDENDDFEDYDDDDDEKPEIGLAFEPENQWSLCRQYFPSKAGGIPAWLDPLNI PSGRSSVCDICGDPLLFLLQVYAPIVEEKCENTFHRMLFVFMCPSMTCLLRDQHEQCKRHPERPSRSVKVFRCQLPRVNP FYSSKHPTNDGSQKPAGSGAALCDWCGTWKGDKLCSSCKQVRYCSEKHQVMSWRSGHKIACQQMKVSSPVCGPNRSGTTS LESHKVGSSNFMWPEYEIIIGDESESNRDVSEDNTLHNSLILRNRIDDSMDSLMDSFQGTDDQNSWTNFVECIAEAPEQV LRYYRNTNAKPIWPVSKGRPSRADIPKCSYCGGPMCCEFQILPQLLHFFKVDNEAGSLDWASIVVYACEASCDASLPYKH EFAWVQLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 19 | 43 | 25 | - | – | |
| MobiDBLite | 20 | 43 | 24 | - | – | |
| PANTHER | 39 | 408 | 370 | 6.2E-130 | – | |
| Gene3D | 170 | 227 | 58 | 2.1E-8 | – | |
| SUPERFAMILY | 181 | 225 | 45 | 1.08E-10 | – | |
| ProSiteProfiles | 183 | 221 | 39 | 11.317 | ||
| ProSitePatterns | 183 | 221 | 39 | - | ||
| Pfam | 183 | 221 | 39 | 4.8E-7 | ||
| Pfam | 253 | 406 | 154 | 5.4E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi1g1v0641900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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