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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0642100 |
| Transcript ID | LotjaGi1g1v0642100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ARM repeat superfamily protein; TAIR: AT1G54385.1 ARM repeat superfamily protein; Swiss-Prot: sp|F4IK92|TORL2_ARATH TORTIFOLIA1-like protein 2; TrEMBL-Plants: tr|V7CYD9|V7CYD9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0642100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119958313..119962171) extracted from Lotus japonicus Gifu genome v1.2.
CCCGCGTTGGCATGGATAGCGGCGGAAATTTGAAAGAAGAATACCATTTTGAATAACACACACTGTGTCACTGTCATCAC TGTCACTGCCCTTCCTCACTCTCTTGCATTGCCACCTTCTCCGTTCAACAGAACCACCACCTACTCCTCCATGACTCTGT TAAGGTAATTTCATCTTCTTTCTTCAATTTTCCAATTTTTTTTTCACTGTTTCATTTCTCATACACTGCTTATTTCACTG CAATAAGCGTTCTTTTTAAAGTAATTCAATGCCCATTTTTCAGTTCCTGGAGAAATTGAATACCCTTTTTGTGAATGCCC AGAAAGTTTTTTTTTTCTTTTTTTTGTTTAATTTTTGAAGAAAATTCAATTTTAGGGGAAGTGTGCAATTGGGGTTTCAA GAAAATTGCATTTTTTAGCCACCCCATTTGCGTAATTAATCTTTCTTCGGTTTTTGTTGTGAAAAAGTTGTGAACTTTAA CCGTAGAAGCAGTGAAACTGTTAGGAATGGGGGTGAACGAATCTGCAATGGAAACCCTAAAAATGAGATTTTTTTTTTCC TTTTCTGTAAATGGTTGTTTTGCTGATTGTGGTTGCTGTTTGGTTGTAGTTCAACAATGGGAAGAAATCTCAGCCCGGTC GTGCGGCAAGAGCTCGCGAATCTTGACAAAGATGCAGATAGTCGCAAATCCGCCATGAAAGCCCTAAAGTCATATGTGAA AGATATGGATTTCAAGGCTGTTCCTGTGTTTCTTGCAAAAATTTCTGAGACAAAGGAAATTCCATTCACAATTTCACTGT ATGAAGTTTTTGCTAGGGTTCATGGTGTCAAGATTGTTCCCTTGATAGACACCATCATGGGATCCATTGTTCAGACCCTA GGTTCAAGTGGAGGGTCTTTCTCTCTTCATCAGGCTTGCTCCAAGGTGGTACCAGCAATAGCAAAATATGGGATTGACCA CTCAACCCCAGAAGAGAAGAAGAGGGGCATAATCCACTCTCTTTGCAAGCCTCTTTCTGATTCTCTTTCAAGTTCACAGG AGAGCCTAACTTCCGGTGCCGCGCTTTGCTTGAAGGCTCTGGTGGAATCTGATAACTGGAGGTTTGCGTCGGATGAAATG GTCAATAGGGTTTGCCAGAATGTGGCTGTGGCATTAGAGGGAAAATGTAAGAGCCAAACGAATGCACACATGGGCCTGGT TATGGCGCTGGCGAAGCGGAATGCTTTGATTGTTGAAGCCTATGCAAGGTTGTTCATACAATCTGGACTAAGAGTACTGA ATGCCGGCCTTGCGGAGGGGAATTCTCAGAAACGGCTTTCAGCGATTCAGATGGTCAACTTCTTGATGAAATGTTTGGAC CCCAGGAGCATATTCTCTGAGCTCGAATCGATAATTGAGGAGATGGAAAGGTGTCAATCTGATAAAATGGCATTTGTCAA AGGTGCTGCGTTTGAAGCCTTGCAAATTGCCAAGGAAATTGCAATTGGCAAGCCAAAGCATGTTAAAAGTCCTGCTTCTG TTACAGGGTCAAATTTAAGTAGGGAAGTGAATACCTCCTCTGGTGATGAAGATCATTCTCCTGCATCAGTTTCACCAGAA TCACGCGCATTGGACTTTTTGCCTGGATATGAATCTGCTGTTGAGTCTCCCATCTCAACCAACTTAGACTATGAGCGAAG GAGTGTTAATAGGAAGCTTTGGAGCAATCAAAATGGAGTGGTTAATGTGTCTCTCAAGGACGGTTTGGCTTCAGCGGTGG GGCAAGAACGTGGTTTGTTAGAGCACTCTGTGAATCATGAGTTTTCTAATGGAAGGAGAGAATTAGCACAAGAGTTTTCT GGTTTCATGGACAGAAATCCTATGCATGGAGTATCCAGAAGTACCACCACAAGTCCCCAAGTAAGTTTCTCAGACATTTG TTATATATTGTAGGACTATAGAGCATGAAGCTTTTACTTCCATTTCCAATTCTGCTTAACATTCTATACTGCATTTTTCT GCCACACCCCTTACTTCAGTATATTGTTTATGTGTTCCACTGGTTTTGATGTTTATCTTATATACTCTTGTTTATGATTT TGTGCCTGTAAATTTATAAAACTTGCTGTCTTATTATTACACAAAATGAGAAGAAGTTGAATTTTGTATGATTAAAATTG TTTTCTAGCCATCAATTCTTAAAACAATGAATCTAGAAACATAAAGAATAAGTTTTTTTTCCTCATCATGGGTTTTTCAA CATTACTCAGAAGAATTCAATTTATGTCTTTCTTGACTTAGTTTAAGATTCTTAATGCACCATTTGTTGAAGGAGCAAAT CTTCAAGTACCATTGTAGTACAGAAGACCGGGTACTCTCCCTTAGTGTAAAAGTGACGGTTTTTTCTAAAAGATATATTT AAAACAAATAAAAAGTATGAATAACTATCCATACATGTGTATGTGTTGCAATATGAGTGGAAGTAGTTCCAAAGACTCCA TCCTCCAGGAGTATTGAAATTTTTTCCCGGTTGAAGATCAAGTGCTCTTACTACTCTATAGCAGCAATTGGAAGAATTTC ATCAACTTTCTTCTCACAACTCTAGGAAATTTTAGTTTCTTTTTTGTATTATAAATAATTTTTAACAAGCTAATCTCATA ATTTTATTTCTATTTATTTTGTGTTCTTATGTTATGGCGTGAATATTTTATATAGTATACAAGTATGTCCTTATTTTATT TGATTACTTATATTGAGTGCGGATATTTGCACTATTCGATTGATTTAATCATACACTTAATTGAAATGGTTGAACTTTCA GTGCCTTTCAAAAATATGTGATGAAAACATTGTTTATAATGCGTGAGGAATAGTGAAATGATGAAGAATATTTCTACTAT GAGAATGTGAACACTTGAAACTTATATAGTGCATAAGATACATTACATCATCAGTTGAATCTTATTTTGTTTGTAATTGA AACTCTTCAATGATATCCTATGCTGCAATGTTTCCGGATAAAATCACTTATTGTTTACTTATGGAGTTAGCTGATTGTGT ATTTACGCTTGTAATTCAGAGGTCACGCACACAGATTAGTGTTGACAACATTGAAATATTCACTACCCCAAGGAAGCTCA TTCACTCTCTTCAAGATTCAAATGACATGAATTTGGATTGCTCCGAGAAACAGAACAGAAGGCTCAGGAGTCTATCCTAT GGCAACATTGACTGGAGCCGAACATCGAAATATGACCAGAACTGTTTCTCAGATCAGGTGAAGTGTGACTGTGGAGTGAA TGAAAGCTTATGTGCTGATGTGGAGTTCCAAGGTAGCTCAGAGTCAGTGTCATCAACAAATGACCTTCCAGGAGATGCTG ATGTGAAAACGCCTTCCAAGATGGTTCCTGAAAATGGAAATGCTATGCAATTACAAAATCATCACATGGGAAAAGCACTT CAAAAGACTACATTCAAATTGGTTTGTGGTCTTTCATTTACTCTTCTTGCAATAGCCGCTCCTTTAATCTGGATCAATAA TCAGGATGAAGGCCACTATCTTGTCCCAACATAACATGCATTGCTCACTCTGATGTGCACCCTTAGGATTAAGAGCACTC TAGGTATGATTTTGTAGGGGTAGTTGCAAATTCCAACAATGTTGGAAAATTCTAGGAATGGTTCTCTTCCACTGAGCATC TTCATTGTGCTTTTGTTTTCCTGTAAAGAGTCTTTAAGAACTTTTGTCTGAATTTTACTTTGTGTTGAGGTGGAAACTTG AATACTGAATTTGAAATTTAAAAACGATAGTTTCATTATTCTCAGCCACATTTAAGACTGATGATATGCACATCTGGAGA CTAGATGTCATTAGTGCAC
CDS sequence (LotjaGi1g1v0642100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTGTTAAGTTCAACAATGGGAAGAAATCTCAGCCCGGTCGTGCGGCAAGAGCTCGCGAATCTTGACAAAGATGC AGATAGTCGCAAATCCGCCATGAAAGCCCTAAAGTCATATGTGAAAGATATGGATTTCAAGGCTGTTCCTGTGTTTCTTG CAAAAATTTCTGAGACAAAGGAAATTCCATTCACAATTTCACTGTATGAAGTTTTTGCTAGGGTTCATGGTGTCAAGATT GTTCCCTTGATAGACACCATCATGGGATCCATTGTTCAGACCCTAGGTTCAAGTGGAGGGTCTTTCTCTCTTCATCAGGC TTGCTCCAAGGTGGTACCAGCAATAGCAAAATATGGGATTGACCACTCAACCCCAGAAGAGAAGAAGAGGGGCATAATCC ACTCTCTTTGCAAGCCTCTTTCTGATTCTCTTTCAAGTTCACAGGAGAGCCTAACTTCCGGTGCCGCGCTTTGCTTGAAG GCTCTGGTGGAATCTGATAACTGGAGGTTTGCGTCGGATGAAATGGTCAATAGGGTTTGCCAGAATGTGGCTGTGGCATT AGAGGGAAAATGTAAGAGCCAAACGAATGCACACATGGGCCTGGTTATGGCGCTGGCGAAGCGGAATGCTTTGATTGTTG AAGCCTATGCAAGGTTGTTCATACAATCTGGACTAAGAGTACTGAATGCCGGCCTTGCGGAGGGGAATTCTCAGAAACGG CTTTCAGCGATTCAGATGGTCAACTTCTTGATGAAATGTTTGGACCCCAGGAGCATATTCTCTGAGCTCGAATCGATAAT TGAGGAGATGGAAAGGTGTCAATCTGATAAAATGGCATTTGTCAAAGGTGCTGCGTTTGAAGCCTTGCAAATTGCCAAGG AAATTGCAATTGGCAAGCCAAAGCATGTTAAAAGTCCTGCTTCTGTTACAGGGTCAAATTTAAGTAGGGAAGTGAATACC TCCTCTGGTGATGAAGATCATTCTCCTGCATCAGTTTCACCAGAATCACGCGCATTGGACTTTTTGCCTGGATATGAATC TGCTGTTGAGTCTCCCATCTCAACCAACTTAGACTATGAGCGAAGGAGTGTTAATAGGAAGCTTTGGAGCAATCAAAATG GAGTGGTTAATGTGTCTCTCAAGGACGGTTTGGCTTCAGCGGTGGGGCAAGAACGTGGTTTGTTAGAGCACTCTGTGAAT CATGAGTTTTCTAATGGAAGGAGAGAATTAGCACAAGAGTTTTCTGGTTTCATGGACAGAAATCCTATGCATGGAGTATC CAGAAGTACCACCACAAGTCCCCAAAGGTCACGCACACAGATTAGTGTTGACAACATTGAAATATTCACTACCCCAAGGA AGCTCATTCACTCTCTTCAAGATTCAAATGACATGAATTTGGATTGCTCCGAGAAACAGAACAGAAGGCTCAGGAGTCTA TCCTATGGCAACATTGACTGGAGCCGAACATCGAAATATGACCAGAACTGTTTCTCAGATCAGGTGAAGTGTGACTGTGG AGTGAATGAAAGCTTATGTGCTGATGTGGAGTTCCAAGGTAGCTCAGAGTCAGTGTCATCAACAAATGACCTTCCAGGAG ATGCTGATGTGAAAACGCCTTCCAAGATGGTTCCTGAAAATGGAAATGCTATGCAATTACAAAATCATCACATGGGAAAA GCACTTCAAAAGACTACATTCAAATTGGTTTGTGGTCTTTCATTTACTCTTCTTGCAATAGCCGCTCCTTTAATCTGGAT CAATAATCAGGATGAAGGCCACTATCTTGTCCCAACATAA
Protein sequence (LotjaGi1g1v0642100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLLSSTMGRNLSPVVRQELANLDKDADSRKSAMKALKSYVKDMDFKAVPVFLAKISETKEIPFTISLYEVFARVHGVKI VPLIDTIMGSIVQTLGSSGGSFSLHQACSKVVPAIAKYGIDHSTPEEKKRGIIHSLCKPLSDSLSSSQESLTSGAALCLK ALVESDNWRFASDEMVNRVCQNVAVALEGKCKSQTNAHMGLVMALAKRNALIVEAYARLFIQSGLRVLNAGLAEGNSQKR LSAIQMVNFLMKCLDPRSIFSELESIIEEMERCQSDKMAFVKGAAFEALQIAKEIAIGKPKHVKSPASVTGSNLSREVNT SSGDEDHSPASVSPESRALDFLPGYESAVESPISTNLDYERRSVNRKLWSNQNGVVNVSLKDGLASAVGQERGLLEHSVN HEFSNGRRELAQEFSGFMDRNPMHGVSRSTTTSPQRSRTQISVDNIEIFTTPRKLIHSLQDSNDMNLDCSEKQNRRLRSL SYGNIDWSRTSKYDQNCFSDQVKCDCGVNESLCADVEFQGSSESVSSTNDLPGDADVKTPSKMVPENGNAMQLQNHHMGK ALQKTTFKLVCGLSFTLLAIAAPLIWINNQDEGHYLVPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 566 | 566 | - | – | |
| PANTHER | 8 | 599 | 592 | 2.1E-209 | – | |
| PANTHER | 8 | 599 | 592 | 2.1E-209 | – | |
| SUPERFAMILY | 14 | 291 | 278 | 1.44E-10 | ||
| Gene3D | 131 | 299 | 169 | 9.5E-6 | ||
| MobiDBLite | 302 | 337 | 36 | - | – | |
| MobiDBLite | 306 | 329 | 24 | - | – | |
| MobiDBLite | 418 | 438 | 21 | - | – | |
| MobiDBLite | 424 | 438 | 15 | - | – | |
| Phobius | 567 | 587 | 21 | - | – | |
| Phobius | 588 | 599 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0642100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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