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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0648500 |
| Transcript ID | LotjaGi1g1v0648500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation calcium exchanger; TAIR: AT5G17850.1 Sodium/calcium exchanger family protein; Swiss-Prot: sp|Q9FKP2|CCX2_ARATH Cation/calcium exchanger 2; TrEMBL-Plants: tr|A0A0L9U817|A0A0L9U817_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0648500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120635330..120638187) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGGCCCATTGAGGAGGTCGCATCATCATGCATGAATAAAGGACCCGATATGGAAGGTGGGAGGGTTGAAAACGACG TGGTATCATCATCTCGTTTTCCGTCATTCTCTTCATCATCTCCCCCAAACTGCCACCACCATGAATGCAACTTCTCATCC ACCGACACGTGTGTGTGAAGACTGAACCCACCCTTTCTTTCACACCATTCACTCTTCCCTTTCCCCAACCGAACCACCCA CAACACAACACGAGACGTACGCGGCAGCGAACCGTTCCATTCGGTTGCCGTCACATGTCATCATTCAGATGGAATCTCAT TCTCAACTTCTCCACTAAATCCCCCCATTTCTTCCATTTCTCTTCTTTTCCCACTTACCCAGTTCCTCCAAATCACCTTT CACCACCAAAAGTTTCCACCTTTGTGGTCAGTTCCTGATTTTCAGCTACACATATTGATTCTCTTTTCATTGGGCTTCTT TCTATTTTTGGAATCTTTTTTTGCCTCAACAGGGTTTTCTACTTTTCTTAGCTACCAAGTTTCAATCTTTCTATCATTAT GAACATGGGTTTTGCTTTTTAATATCTGGGCATGTCTACAACTACCACAACTACTACAACTACAACCACAGTTTCTCTTT CCAAAAGAATGGGTGGTTTCAGTTTCACAGTGTTCTTCAACACCTCGTTTGTCTTTTTGTTGTGTGTTTGTTTTATAGTT CATTTCAAGTACTCTTCAGAACATGCTGTTTTGAAGAGCAACAACAACAACCGGTTTGGTTTTGGTGTTGAACAATCTTG TAAGAGCTTCCTGAGCCTGAGTTATGAAGCTAAGTGCTTGTACATGAAATCCAACAACAATAATCCATGTGTTTCTCAGG GCTATGTTGATTACCTTTACCTTTTCTATTGCAAATTTGGGGGGTTTCCTATATTGGGTCATTTTCTGTTGTTGCTCTGG CTATTGGTTCTGTTTTATCTGCTGGCAAACACTGCTTCTGATTATTTTTGTCCTTCCCTTGAACATTTGTCTAAGTTGCT GAGGCTATCCCCTGCTATTGCTGGAGTGACCCTTCTATCTCTTGGCAATGGTGCTTGTGATGTTTTTGCCACCCTTGTTT CTTTTGAGGGTAGTGATGATACCCGGGGGATTGGGTTTAACACTGTGCTTGGGGGTGCTTCCTTTGTGTCATGTGTTGTG GTGGGGATTATGAGCATTTGTGTTCGCCATAGAGGGATTCGGGTTACGAAATCTGCCTTGGTGAGAGATGTGTGTTTTCT TCTCTTGGTTCTTCTAGGCTTGTTCACCATTTTGATCACTGGGGAGGTCAATGTTGTTGGGGCAATTGGTTTCTGCTTGT TGTATGTGGTCTATGTGATAGTTGTTTATGTCTCATCTTCCCCAAGGAAAGGTGTCTGTGGGGATGCTGAAACTGAAAGT GATGACAATTCAAGTAATGGCAACAATTTAAGTGCTCCTCTGCTCAGTGGGATGGAGAAAGGACTAATTGATTCTGATGC AAATGGAGCTCAGGAATGTTGCTTGAAAATTGAGAACAAATGCTGCTGTGTGAAATCTTCAATATGTAGAAGGTTACTTT TTGTCTTGGAGATGCCCCTTTACTTGCCTAGGAGATTGACAATACCTGTTGTATGTGAAGAGAGGTGGTCCAAACCCTAT GCAGTTTCTTCAGCTATACTAGCACCACTTTTATTGTCTTCCTTGTGGATCCCAGACAAGGAAACCAGTTTTTTTAATTC CAACTCAAGCCTAATAGTTTGTGGAATTGGGTTATTGGTTGGAATTATATTAGGGGTAACTGCATTTTTCACAACAGAAG TGTCAAATCCACCTAGAAAATACTTGTTTCCTTGGCTTGTTGGAGGGTTTGTGATGAGTGTGGCATGGAGCTACATTTCA GCTCAGGAATTGGTGGGGTTGTTGGTTTCACTTGGTCACATATGTGGAATAAGTCCTTCAATATTGGGGTTAACAGTTCT TGCTTGGGGAAATTCACTTGGGGATTTGGTGACTAATTTGACAATGGCTTTGAAGGGTGGTCCAGAAGGTGCTCAAATAG CAATATCAGGTTGTTATGCTGGCCCTATCTTCAATATAGTGGTTGGGTTGGGCTTATCTCTTGTGAGCTCTTCTTGGTCT GAATACCCTTCATCTGTTGTGATCCCTAGAGATCCTTACCTGTGGGAGACATTGGCACTTTTGGTGGCTGGATTGGTTTG GGCACTTGTGGTTCTGATTAGGAGGGATATGAAGCTTGATGCAGTCCTTGGAGGAGGGCTTCTAGTTGTTTACTTCATTT CTCTGTTTCTAAGGCTGGTTCAGACACTTGGATCTCTCCAATTTCAGGATATGTTAGTCTTATAGCATACGTAGATTGGT TTCTCTTTTATCAGAATCAATGCCAAAACTCAAAAGCTACTAAGAAGTTTTTCCTAGAATTGGTTCTTACTTCAGAATCA ATTGTAGAAGAATTTCTTAAGAGGCTTCAAGAGATGATGAGAATTATAAAATCGTCATCAGATTCTTATAGCCATTAGCA ACTGACATTACTCTCTGTAAAGAAACTATATTATGTAACTATGATAGGTAGGGACTAGGCAGGCATAGTTTGGCATAGTT TGTTTGGGCCAAGGGGTTTAGCTTCCACTGCTGTTTATACCTAGCTTTCATTTGTTAATACCATTAGTAATGCATCAAGA TCAGATACTTAATATACGCCTCATTTTTCTCTATAATTCTCTTCATATTACATCTATTATATATTACATCTACTACTCCT CTATACGCGGACGTCTACGAATATTTTTACTCTCTCTACACTACTCGAGTATCAACAA
CDS sequence (LotjaGi1g1v0648500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACAACTACCACAACTACTACAACTACAACCACAGTTTCTCTTTCCAAAAGAATGGGTGGTTTCAGTTTCACAGT GTTCTTCAACACCTCGTTTGTCTTTTTGTTGTGTGTTTGTTTTATAGTTCATTTCAAGTACTCTTCAGAACATGCTGTTT TGAAGAGCAACAACAACAACCGGTTTGGTTTTGGTGTTGAACAATCTTGTAAGAGCTTCCTGAGCCTGAGTTATGAAGCT AAGTGCTTGTACATGAAATCCAACAACAATAATCCATGTGTTTCTCAGGGCTATGTTGATTACCTTTACCTTTTCTATTG CAAATTTGGGGGGTTTCCTATATTGGGTCATTTTCTGTTGTTGCTCTGGCTATTGGTTCTGTTTTATCTGCTGGCAAACA CTGCTTCTGATTATTTTTGTCCTTCCCTTGAACATTTGTCTAAGTTGCTGAGGCTATCCCCTGCTATTGCTGGAGTGACC CTTCTATCTCTTGGCAATGGTGCTTGTGATGTTTTTGCCACCCTTGTTTCTTTTGAGGGTAGTGATGATACCCGGGGGAT TGGGTTTAACACTGTGCTTGGGGGTGCTTCCTTTGTGTCATGTGTTGTGGTGGGGATTATGAGCATTTGTGTTCGCCATA GAGGGATTCGGGTTACGAAATCTGCCTTGGTGAGAGATGTGTGTTTTCTTCTCTTGGTTCTTCTAGGCTTGTTCACCATT TTGATCACTGGGGAGGTCAATGTTGTTGGGGCAATTGGTTTCTGCTTGTTGTATGTGGTCTATGTGATAGTTGTTTATGT CTCATCTTCCCCAAGGAAAGGTGTCTGTGGGGATGCTGAAACTGAAAGTGATGACAATTCAAGTAATGGCAACAATTTAA GTGCTCCTCTGCTCAGTGGGATGGAGAAAGGACTAATTGATTCTGATGCAAATGGAGCTCAGGAATGTTGCTTGAAAATT GAGAACAAATGCTGCTGTGTGAAATCTTCAATATGTAGAAGGTTACTTTTTGTCTTGGAGATGCCCCTTTACTTGCCTAG GAGATTGACAATACCTGTTGTATGTGAAGAGAGGTGGTCCAAACCCTATGCAGTTTCTTCAGCTATACTAGCACCACTTT TATTGTCTTCCTTGTGGATCCCAGACAAGGAAACCAGTTTTTTTAATTCCAACTCAAGCCTAATAGTTTGTGGAATTGGG TTATTGGTTGGAATTATATTAGGGGTAACTGCATTTTTCACAACAGAAGTGTCAAATCCACCTAGAAAATACTTGTTTCC TTGGCTTGTTGGAGGGTTTGTGATGAGTGTGGCATGGAGCTACATTTCAGCTCAGGAATTGGTGGGGTTGTTGGTTTCAC TTGGTCACATATGTGGAATAAGTCCTTCAATATTGGGGTTAACAGTTCTTGCTTGGGGAAATTCACTTGGGGATTTGGTG ACTAATTTGACAATGGCTTTGAAGGGTGGTCCAGAAGGTGCTCAAATAGCAATATCAGGTTGTTATGCTGGCCCTATCTT CAATATAGTGGTTGGGTTGGGCTTATCTCTTGTGAGCTCTTCTTGGTCTGAATACCCTTCATCTGTTGTGATCCCTAGAG ATCCTTACCTGTGGGAGACATTGGCACTTTTGGTGGCTGGATTGGTTTGGGCACTTGTGGTTCTGATTAGGAGGGATATG AAGCTTGATGCAGTCCTTGGAGGAGGGCTTCTAGTTGTTTACTTCATTTCTCTGTTTCTAAGGCTGGTTCAGACACTTGG ATCTCTCCAATTTCAGGATATGTTAGTCTTATAG
Protein sequence (LotjaGi1g1v0648500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTTTTTTTTTTVSLSKRMGGFSFTVFFNTSFVFLLCVCFIVHFKYSSEHAVLKSNNNNRFGFGVEQSCKSFLSLSYEA KCLYMKSNNNNPCVSQGYVDYLYLFYCKFGGFPILGHFLLLLWLLVLFYLLANTASDYFCPSLEHLSKLLRLSPAIAGVT LLSLGNGACDVFATLVSFEGSDDTRGIGFNTVLGGASFVSCVVVGIMSICVRHRGIRVTKSALVRDVCFLLLVLLGLFTI LITGEVNVVGAIGFCLLYVVYVIVVYVSSSPRKGVCGDAETESDDNSSNGNNLSAPLLSGMEKGLIDSDANGAQECCLKI ENKCCCVKSSICRRLLFVLEMPLYLPRRLTIPVVCEERWSKPYAVSSAILAPLLLSSLWIPDKETSFFNSNSSLIVCGIG LLVGIILGVTAFFTTEVSNPPRKYLFPWLVGGFVMSVAWSYISAQELVGLLVSLGHICGISPSILGLTVLAWGNSLGDLV TNLTMALKGGPEGAQIAISGCYAGPIFNIVVGLGLSLVSSSWSEYPSSVVIPRDPYLWETLALLVAGLVWALVVLIRRDM KLDAVLGGGLLVVYFISLFLRLVQTLGSLQFQDMLVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 25 | 45 | 21 | - | – | |
| PANTHER | 29 | 594 | 566 | 7.0E-261 | – | |
| PANTHER | 29 | 594 | 566 | 7.0E-261 | – | |
| Phobius | 46 | 108 | 63 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 109 | 131 | 23 | - | – | |
| Pfam | 121 | 266 | 146 | 6.3E-22 | ||
| Phobius | 132 | 151 | 20 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Gene3D | 152 | 277 | 126 | 9.6E-6 | – | |
| Phobius | 152 | 175 | 24 | - | – | |
| Phobius | 176 | 186 | 11 | - | – | |
| Phobius | 187 | 211 | 25 | - | – | |
| TMHMM | 189 | 211 | 23 | - | – | |
| Phobius | 212 | 222 | 11 | - | – | |
| Phobius | 223 | 242 | 20 | - | – | |
| TMHMM | 223 | 242 | 20 | - | – | |
| Phobius | 243 | 247 | 5 | - | – | |
| TMHMM | 246 | 268 | 23 | - | – | |
| Phobius | 248 | 267 | 20 | - | – | |
| Phobius | 268 | 362 | 95 | - | – | |
| Phobius | 363 | 380 | 18 | - | – | |
| Phobius | 381 | 391 | 11 | - | – | |
| TMHMM | 392 | 414 | 23 | - | – | |
| Gene3D | 392 | 585 | 194 | 3.7E-9 | – | |
| Phobius | 392 | 413 | 22 | - | – | |
| Phobius | 414 | 424 | 11 | - | – | |
| TMHMM | 424 | 443 | 20 | - | – | |
| Phobius | 425 | 442 | 18 | - | – | |
| Pfam | 429 | 582 | 154 | 3.0E-25 | ||
| Phobius | 443 | 447 | 5 | - | – | |
| Phobius | 448 | 473 | 26 | - | – | |
| TMHMM | 450 | 472 | 23 | - | – | |
| Phobius | 474 | 493 | 20 | - | – | |
| Phobius | 494 | 516 | 23 | - | – | |
| Phobius | 517 | 535 | 19 | - | – | |
| TMHMM | 535 | 557 | 23 | - | – | |
| Phobius | 536 | 555 | 20 | - | – | |
| Phobius | 556 | 561 | 6 | - | – | |
| Phobius | 562 | 583 | 22 | - | – | |
| TMHMM | 564 | 583 | 20 | - | – | |
| Phobius | 584 | 597 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0648500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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