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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0649100 |
| Transcript ID | LotjaGi1g1v0649100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|I3SQR7|I3SQR7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0649100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120702185..120705192) extracted from Lotus japonicus Gifu genome v1.2.
AGATTTTAGTGCAAGTGTTGAAGCCTGTCGACCCTTAAAAAGTTGTCTTTATTGGCAACAAATTCAGATGCAAAAGTCAC TATCTTTATCAATTTTTTTCTGATTCTTCATCTCTTTCTGTTCTATGTAATGGGTATTTTAGGTGCTTAGCTTCTTCACA CTGTGTGCAAAACCAACACCAACACCAACACCAACATCAACATGTCTGAGACTAACAAAGATTCGGGTATCAAGCTGTTT GGTCGGAAAATTCTGGTGTCGCCGGAATGTCAGATTCCGGCTAACTCTGGACACACGGTACAACAATTGTTTCAGCTTAT TTCTTCATGAATCTTCATGCTTTGTATTTATTGCACGTAAATTTTGGATTTTTATTGTGTTTAATGTTATGGGGTTTTTG AGATTTTAGTACTAAGTTTTGGCTGGTTATCAGAGTTCAGAACCTTCTGAACAGGGTGGATGTTTTGTTAATGTTTATGA GGATGACATGATTGGGAATATTTGTGTCTTTCATGTTACATCAAATTCGGATTAACAAATATGGGGTTTAATATCATTGA AGTTGTTTTCATTTTGAATTGGAGTATCTTTTTTATTTTTTATTTTTTCTTAAATGGTGTTGGGAGATGGTTGTTTCATC TGAAGGCTAAGGCTTTTGATAACTGGGATTGGTTTCATGTGATTGGGTCTTGTAATCCCTTCTATATCACTTGTTTTCAT GTATTCCAATGAATTTGGCCCTCTTCATAGTGTTAAAGGTTCTCTTTTGTGATTTCTTCTGGAATTATGCACATAATTGC TTTGATGCCTTTTAAGTCTTATTATCTTCAAGTATGTGGTCAGTACTATATGCACTCTTTTTTCTTTGATATGGTATCCT ATGCTTATGCTCATATGGTGAGTGAGAATGGGATAAGCTGAAATTGAAACATAGGTAACAATATATAAGGCAGGACATGG ATGAAAAAGTAGTAAAAATGGAGACTTAGAAAATAGATGCATAGTGTATTTAAACGTTGAGGTATGAAAGAGTTACACCA ATTGCCTTCCATGATGGAAAATGAATATAACATGGTAATTGTGTATCTTGCTTTCATTTCCTTGTCTATTCTTACTAGCT TTTATTTTGCTTGATTCATTACTGATTGTGGTTTCAAATTTTAGGATGCTTTCAGCAGCACAAAGAAAACACAAGTGGAA ACACCTTGTGCAGAATACTCTAAGCAACAAGAGAATCCTTCTGATTCAAGAGATATTAAAGAGGACTCTGAACATAATGT GAAGGAAAATAAGCCAATAGTGAATTCCAATCCTGTGGAGGATAATATGGACACTGATAATGCTGAACAAGATAAAATCT TAAAGAAACCAGACAAGATTGTTCAGTGTCCGCGATGCAACAGCATGGACACAAAGTTTTGTTATTTCAATAACTACAAT GTCAATCAACCTAGGCATTTCTGCAAGAGCTGCCAAAGGTATTGGACTGCTGGTGGCACGATGAGAAGCGTTCCTGTAGG CGCTGGGAGGCGGAAGAACAAGCAACTAGCCTCGCAATTCCGGCACATTATAGTGAACTCTGAAGGAATTCCAACCTCTA GGCTAGAAACCACAGGCTCATATGGTTACCAGCAGCACATGTCAAGTGATTTTAGGCCTTCAACAGAGAATGGGACTGTG TTGAAATTCGGTCCAAATGCCCCTCTCTATGAGTCAATGGAGTCAATGCTTAATCTTAGAGAACAGAAAAGAATTGCTGA TTCAAATTCTTCCAGTTGTGTGGAATATGGAGAGGAGCCATCCACATGTGTTTCTTCAGTGACAAATTCCGCTACTCAAG GAAATGAATTTTCAGAGAACAATACATCAAATTTGTTGCAGTACCACCCTGTTCCTCCTTGGGTATTACCATGGAATCCA GGTTGGAACAATGTTGCTTCCTTGGGAGTGATTCATCAGTCTTCATCACCAATGTGTAACCCTGCAATGCAATGGTGTCC CGCACCAATGGTGGCTATTCCAGGCACTTGCCCAACTAGCATTCCTTTGCAACATGTACCAGCATCATACTTGGGGGGAA CACCACTTTATGCTGCTGGAACCGGGACATTATCGACCGGATCCAATGCTTGTGTTTCGCCATCTTCCTCCACCACTACC AGTTCCTGCTCCGGCAATGGCTCCCCAATCCTTGGCAAACACACTAGAGATATTACAGTTTTCACAGATGATGAGAGATC AGAGAATTGTGTTTTGGCTCCAAAGGCCATTAGAATCTGTGACCCAAATGAGGCCTCAAAAAGTTCTTTATGGACTACAT TATCTATCAAGCCTGATAAACTGCATCAATCTTTATCAGATGGTGGTTGTTTGAGGAAAATTGAACCTAAAGGAGACGGT GAAGACCGTGTATTAGGCGCTTCTCAAATCTTGGAAGCCAACCCAGCAGCTATTTCTCGCGCTCATGCATTCCAGGAAAG CACATAATGGATTTTCTAGCTTAAAATTTTCCATTGACAAATATTTCTAGCTTTTGTTTCTCTTGCACAGAATTTGCTTT ACTTTGTGACATCTATTGTGTGATTTCATTTTCAATGGTGTACTTAAATTAATGTTGAGCTATGCTCTTTGAACATGATG ATTTTGGCTTTGATACAACAAATGATAAATTTACAGTGATTAATTTACTGCAAAACGCTTTTCATTTAAGAGATTGTACA TAGAAAAGTATAGGATGTTATTAATGTATGTAGCTTAGTATCTATTGGTTTGTACATAGAAAAGTATAGGATGTTATTAA TGTATGTAGCTTAGTATCTATTGGTTTGAGATGCATGCATGAGTTCATGATTCAATTCCCCTTTTTGGAGGATTTTGATT TTGAACCCCTTTTGCTTTAAGAACTCTCTTTTACTGTCATTATCCTTTTACTTTAGGGAAACACTACCCTACTTTTGTTT TCTTTATCATTTACTTGTCTAGCAAGGAACAAGTCATAATGGGAAAAT
CDS sequence (LotjaGi1g1v0649100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGACTAACAAAGATTCGGGTATCAAGCTGTTTGGTCGGAAAATTCTGGTGTCGCCGGAATGTCAGATTCCGGC TAACTCTGGACACACGGATGCTTTCAGCAGCACAAAGAAAACACAAGTGGAAACACCTTGTGCAGAATACTCTAAGCAAC AAGAGAATCCTTCTGATTCAAGAGATATTAAAGAGGACTCTGAACATAATGTGAAGGAAAATAAGCCAATAGTGAATTCC AATCCTGTGGAGGATAATATGGACACTGATAATGCTGAACAAGATAAAATCTTAAAGAAACCAGACAAGATTGTTCAGTG TCCGCGATGCAACAGCATGGACACAAAGTTTTGTTATTTCAATAACTACAATGTCAATCAACCTAGGCATTTCTGCAAGA GCTGCCAAAGGTATTGGACTGCTGGTGGCACGATGAGAAGCGTTCCTGTAGGCGCTGGGAGGCGGAAGAACAAGCAACTA GCCTCGCAATTCCGGCACATTATAGTGAACTCTGAAGGAATTCCAACCTCTAGGCTAGAAACCACAGGCTCATATGGTTA CCAGCAGCACATGTCAAGTGATTTTAGGCCTTCAACAGAGAATGGGACTGTGTTGAAATTCGGTCCAAATGCCCCTCTCT ATGAGTCAATGGAGTCAATGCTTAATCTTAGAGAACAGAAAAGAATTGCTGATTCAAATTCTTCCAGTTGTGTGGAATAT GGAGAGGAGCCATCCACATGTGTTTCTTCAGTGACAAATTCCGCTACTCAAGGAAATGAATTTTCAGAGAACAATACATC AAATTTGTTGCAGTACCACCCTGTTCCTCCTTGGGTATTACCATGGAATCCAGGTTGGAACAATGTTGCTTCCTTGGGAG TGATTCATCAGTCTTCATCACCAATGTGTAACCCTGCAATGCAATGGTGTCCCGCACCAATGGTGGCTATTCCAGGCACT TGCCCAACTAGCATTCCTTTGCAACATGTACCAGCATCATACTTGGGGGGAACACCACTTTATGCTGCTGGAACCGGGAC ATTATCGACCGGATCCAATGCTTGTGTTTCGCCATCTTCCTCCACCACTACCAGTTCCTGCTCCGGCAATGGCTCCCCAA TCCTTGGCAAACACACTAGAGATATTACAGTTTTCACAGATGATGAGAGATCAGAGAATTGTGTTTTGGCTCCAAAGGCC ATTAGAATCTGTGACCCAAATGAGGCCTCAAAAAGTTCTTTATGGACTACATTATCTATCAAGCCTGATAAACTGCATCA ATCTTTATCAGATGGTGGTTGTTTGAGGAAAATTGAACCTAAAGGAGACGGTGAAGACCGTGTATTAGGCGCTTCTCAAA TCTTGGAAGCCAACCCAGCAGCTATTTCTCGCGCTCATGCATTCCAGGAAAGCACATAA
Protein sequence (LotjaGi1g1v0649100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSETNKDSGIKLFGRKILVSPECQIPANSGHTDAFSSTKKTQVETPCAEYSKQQENPSDSRDIKEDSEHNVKENKPIVNS NPVEDNMDTDNAEQDKILKKPDKIVQCPRCNSMDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTMRSVPVGAGRRKNKQL ASQFRHIIVNSEGIPTSRLETTGSYGYQQHMSSDFRPSTENGTVLKFGPNAPLYESMESMLNLREQKRIADSNSSSCVEY GEEPSTCVSSVTNSATQGNEFSENNTSNLLQYHPVPPWVLPWNPGWNNVASLGVIHQSSSPMCNPAMQWCPAPMVAIPGT CPTSIPLQHVPASYLGGTPLYAAGTGTLSTGSNACVSPSSSTTTSSCSGNGSPILGKHTRDITVFTDDERSENCVLAPKA IRICDPNEASKSSLWTTLSIKPDKLHQSLSDGGCLRKIEPKGDGEDRVLGASQILEANPAAISRAHAFQEST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 472 | 472 | 6.4E-195 | – | |
| PANTHER | 1 | 472 | 472 | 6.4E-195 | – | |
| MobiDBLite | 24 | 89 | 66 | - | – | |
| MobiDBLite | 25 | 54 | 30 | - | – | |
| MobiDBLite | 55 | 73 | 19 | - | – | |
| Pfam | 103 | 159 | 57 | 9.1E-32 | ||
| ProSiteProfiles | 105 | 159 | 55 | 28.053 | ||
| ProSitePatterns | 107 | 143 | 37 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0649100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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