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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0649800 |
| Transcript ID | LotjaGi1g1v0649800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein VAR3, chloroplastic; TAIR: AT5G17790.1 zinc finger (Ran-binding) family protein; Swiss-Prot: sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplastic; TrEMBL-Plants: tr|A0A0B2SAH8|A0A0B2SAH8_GLYSO Zinc finger protein VAR3, chloroplastic; Found in the gene: LotjaGi1g1v0649800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120840634..120846522) extracted from Lotus japonicus Gifu genome v1.2.
ACACAATCAATTATAAGCTTTTACTTCATAATTTCAAAATCAATTATACTAGAAGCTTTGAGTTGAAAACAATCAATTAT AATTGCACTAAGCCTGAGCCAGAGGCATATCAAAATCGAACCAAGGCAGCTTCACCCGACAAAAATGGGCGGCGCCGCCC CAAGGTTCCTTTTCCTCCTCACCACTCCCCTCCCTCCCCTCCTCCGCCGCAACCTCCGCCTCTTCTCTTCCTCTCTCTCC TCCCATTTCCACCACCGCCTCTCTTCCTCTTCCTCTTTCTCACCCTCTTCTCCTTCTCTCACTCCCAAACTCAAACCCAA AGCTTCCCAGCACCAACAACAACAAAGCCACCTTCACACCCAACCTCCCTCCTCCCTCACCACCCACCCATGGCCCGAAT GCTCCAGATTTCTCTCCCACATCTCCTCCGTCGGCTACGCTACCACCGCTCCCGAAACCGGCTTCCCGGCGACCGGGGAG TTGTCGCAGCGCGAGGTCAGTGCCTGCTTGGCGTTCGCCCGCGACCGACCGAACCTTCTCCGGTTAGTTTCTTGTTCCAT GTTCCAAGCTTTTGCTTCTGTTTTTGGGTTTGAATCGAATTGTGTTGAATTGGATTGAATGGGTTGTAGGTTGCTTTCGA TGAGAGATATTGCGGTTGTGGTTGAACATGGCACTCCCTTTCTGTTTCCAGATGCTGAGGATTCCATGAGGAAGATGAAG TCTCTTGTTCAATATGGTGACTCCACTGTTAGTGCTACTGCTGAGTTTACTCTATTTTGCATATCTGATATTTCTCTTCA TTTTCATTTATAAATGGAAGTTCATGCATTACTCATTCTTTATAAAGCTGCATTGGTACTAGTACTTCCATCCTTTTCTA TTCAATGTTGAGTTAGTTAGTAGTTTGCCTTTGAATTGATTAATGCTTTTGGTATTAAGCTGAGCGTGTTAGTGTGCTAT TGTTAAAGTGCAATTGTTTCATTCCATTAGTCGGGGCCGAATTATTGTGTTTGCAGACAGTAAAACCCATTTTCCTTTAA TTGATATTTGATCGGATAATCAGTCAATTTCAACCATAAGTTTGTTTAGAGTCCTTCAAATTCCAAGCTATATTTGTTTC CTCAACTTGGAATGTTACTGATGTTATGTGGCCCTTCTCAAATGGTTGCTATTTTGGATGACTGGATGATATCCTCTATT CTGTAATGGTGCAATTGGTGCTTTGTATCGGTTGGGGCCTGCTATATGAGTATTGGAACTTGCAGATTTCTGTGGGTTTA GTGATCAAACTGGCTTTTTTATTTGTTTAAGCTATCTATCACCTCTCACCTAGCACAAGGCACGTGACTAGGTGCCAGAA GCAAGGGCATTCCCTGACCTTGCAAATGGTGCTTGCATGTTTTGTGGTCTTGCTCAATCAATAACATGTTCTGAGGCTTC TAGCTGTTGGGTAAAGACTTGCGCACACACACATCAAAATCAAGAACACAACACAATGAACATCACAAAGAGAGAACATT GGAAGACATGTGATATTTCTGTGGTTTGGCACCTCTTGCCTACATCCACAGAAATGTCTCATTGCCTCAACAGAAGTATT TCCTATATCAAATAAAGATATAAGGTTTACCGGATAAACTTGAAAACCCACCCAAGTAGTGCATGCCATCACCCTTCAAA GTTCAAACATGTGTCACTCACTCAAGAGTTACAAGGAATGGTAACTTTACTCTCAACGAACCTTCTCACGTCTTGTATGC TTGGGAGATATCCTTCCTTTGTTTCGTATGACCCTGCCTTCAGCTTGGGTGGTGCCATCTCCCTTCACATGACCCTTTAT CCTTGATTTATAGTGGTGGTATATGGTGATAGATATAGACCTCCAATTAAAAAGGTCTATCATACAAAGATTAAGAGTGG GCCTGAGCCTGACAAGCTAGAAGGCTGATAAGGTGGTTATAGTTAGTTAGTTGATTGACAACTGTAACTGTCAATTAGTT ACTGTTAGCTGAGTAGTTAGGAGTTGTACAATTCCTATAACAGATTGTGATGTAGACAGGAAGGATTTATTCAGATGTTG GATCAGTAAGGAGAGACTAGCCTCTCGAAAGCTAGATTGTTGTACTCTGTTACCATTCAATTCCATAAGAGAATCTTTTC TCTATTCTTTTCTGATTTTCCTTCTACAACTGATCCAATTTCTATCAACTGGCTTCTTGGATAAACACACACATGCTTTT CCCATTTCCAATAGTCCTCCCATTCTCACTATCACTATATTACATTACACCTTGTTCACTCTCCCTTGAATTAATGTTCA TAAGATTGAATTTTGTTCTACAACTCTAGCTCCCTTGACATCACCGGCGCACTAATTTCTTGGACTGGAAGCTTTGAATT CTTCAATTTTCATTTTCATTAACATAGGCTAGCTAAATAGGGGAAAAAGAAAAGGGTAACAGTTTAGGTCCACTTTACTT TTTTATGCAATTCTTTGGTATTAAATACTTTTTTGGAGGTTGGGGAGCGGGGTATAACGTATTTAGAGTTAAATTTGCCA GTTTCATTTATTTGCTTTCCTCTCAAGTCTCCTGGATCATGCTTAGCCTTATAATCATTTGTCTTTTTATGTTAGGCCCT TTTAGGCTTTTGGCTTTTTTCAAACAAAATTGGTTATTCTTGTTTAAAATAAATAGATTTACCTCTATTACAAGTTTCAA AATTCATATTTAGTTATAGATCCTTTTTAATTCCTATTATTGGGATTATATATTAAACCCTATAATTTATTTATCCTTTT CTGGTTGGTGTATATAACCAGAAAATAGAGAGCAATTTAAAAAATTACATAGTGGTTGGAAATTTTGACCATGAAACCTT TTTTTTTAATGCATATTTCTTGTGGATCAAAAAAATGAAGAAAAGTGAGAATTACTTGAAATCCTTAACTTCTGCCTAGG CTCATCTTTTCAATTCATTCCAAAATATTTGAGAATACTTACATGCATATTTTACGGAACATATCTTCTTTCATCTCTTA ACGCTTAATTTCAATTTTTGACAAGTGTGTTGAAGCTGTTGCTGATATATTTATGCATGATATGTTTTTCATAGGTGTTG GATACTGATAGGCCAAATATGGTTGACCTAATGAAATTTCTGCTGAGTTATGCAAGTAACCCATCGGCCACTTCAGAAAG TAACAGTCTCTATAACAGGGATCTTGTTGAATCATCTGTCAGAAATCTGTTTGGTGAACTTTTCAAGCTGAGTTACAATG CACCTGGACCTAACTCTTTTGATTCAGTGCAAAATCAAATGCCTGGTAGATTTGAACGGGCAATGCCTCCTGGTCAAAGA ATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGGTAATTGTCTAAATTATTTTTAATTTTTACTTTTGAGTCCCAATG AACTGTGTTACATTTTAATGCAGGATTTACCAAGGTGAGTGCGGTTCAATAGTTATAGCTAATTTCATTTCCTCAAGTAT TACCTAACATTCTGATAAGTGAGCATACTCTTTTTCTGTGTTGAGCAGGTGTAATTTCATGAATTTTGCAAGAAATACTA AATGTCTTGATTGTGAGGAAGCTAGACCAAAAAGACAACTAACTGGAGGAGAATGGGAATGTCCTCAGTAAGTATTTTCT GCCTCTAAAATCTTTTTCACCCCCTAACCTTTGATATAGCCATCCAATTAATAAGGATTTTCATTTTCAAGGTGTGATTT CTGTAACTACGGGAGGAACGTGACTTGCTTAAGGTGTGACTGCAAGCGGCCTGGCCAAATATCGTTGGGTGCCACCAATC CCGTATCACATGTGGGGTATGGAAATGGAAACAATTCTGATATGTCAGATGTTGATGCTAGGTTAGCTGCTAATGAAGAG AAGGCGCAGCGTTGGTTTAACAAGGTTTCTCAACTAGACAGTAATGCTGATATTAACAGTGTGATGGCAGATGAGGATTT TCCGGAAATAATGCCGTTAAGGAAAGGAGTTAACAGATTTGTTGTGAGCACAAGGAAAACTCCATTGGAGAGGAGGTTGG GCAATGCTCAATACAAGAGTAACTTGGGAGATAATGACATTCCCGGGGTTGAGGATTTTAAAGCTGGCCTTCCCCAATCC GACAAGAAAAACATTGGTGCAGAACAAGATACCAGTAGATACGGCCCACCTTCAATTGCTAGCAATGCTTCAAATTTCAA AGATGTGAAAGGGAGCAACAGTAGTTCCATGCCTCCCTTTCCATTTTCTTCAGATGCGCTTCCCCAAAAGTCTGAGAACT TGCGAGCAGAGGATAGAAAAACCGCGCCATTGGGCGCCAATGTTGGATATGTCAGTCCTGGTGGTGACAATCCACACTTT TCTAATAACACTACAAGTGAAAATGTGGAAAAGGAGAAAGAGCAAGCTGAAAAATCTGAGAGGTGGTTTAGAAAGGTTGT GGAGCTGCATGATGCTTCAGATATGACAAGTGCGGTATCTGATGAGGATTTCCCTGACATAATGCCTATGCGTAAAGGAG AAAATCGATTTGTTGTTAGCAAGAAAAAAGACCGCTCCTTGACATCACCGGCATACAAGAGACGTTTGGCCGTGGAGCAA TCTGGAAACACCAACTTTGTCCCCTTTGTCCCTTTCCCCCCAGATTACTTTGCCAAGAAGGACAAGCAACAACAGGAAGA TGGAACAGAATCAACAGTTAGGTCCAGTGTTGAATCATCTTCAATATCGGATGATGCTAGTGCTAGATCTGGACAGAGTC CAAAACCTTCTGAACAGGGCTCAAATAACAACAACCAAGTTGGTTCTATTCATGGGGAAACTAGCAGTAGATATTCAAGC CAGAGTTTCAATCATGTGCCAAATTTCTCTGGGAGTTCATCCCCAGGCTCAGCATCTGAGAACCAGAAGCCAAATTTGAG AGTGAGTTCATCTGCAGGCTCACTGTCTGATAACCAGAATGTCAGAGCAGGATGGACAGGAAAGAGCTTGGAGGGGTCGG CCGTGAAGCCAAATTTGAGAGGGAGTTCATCTGCAGGCTCAGTGTCTGATAACCAGAATGTCAGAGCAGAATGGACAGGA AAGAGCTTGGAGGGGTCGGCCGTGAAGGAACCGGATCCTTTGGACATGTCAGAGGAGGCAAAGGCGGAGAGGTGGTTCCG TCGTGTCTCGCAGATTAAGGATATATCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGGA AAGGGGTGAATAGATTTGTTGTGAGCAAGAGGAAAACACCATTGGAAAGAAGGTTGACATCTCAGCAGTACAAAAGAAAT CTTCCAATTGTGAACTCGGATCCGGTTAAAAGAGAAAATGAAGGTAGCTAAAGAGTGGTGTTATCATTGTCCATTTGATT TAACTTTCACTGTGATGTTAAAAGATTATTAGCAAATATAGAAAAGGAAAATGAAGATGATGGAAAGCTTCTATTGTCAT CTCACATCTGCAAGAGAATTTTGATATAAATATTGCTATGTTGAGGTGATCTTCCTTTATATCACGTTGAGGACTTAGCA TGTCAAATTTCAGAAGTTAAGATGCATTGAAACCATGTTTTCTTGATTAAAAAAAACCTAATATTTTCATACTCAGTTTA TCTATCAGAAGTGTTGAACAAATTTGATATTTTCACACCACCTCTCTTTCATCCCATTTTCATTGACTTTTTCTTTCTAT ATCTCTCTTCTTTTCCTATTACATCTCTCAATCTCTTCTATTCCTATCTTTTTCTTAGTAGGTGTTGGTGGAATGATGTG AACAATCAATTTTCCAATATAGAAAAGTAGAATTCAAATTTAAATTTAA
CDS sequence (LotjaGi1g1v0649800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGGCGCCGCCCCAAGGTTCCTTTTCCTCCTCACCACTCCCCTCCCTCCCCTCCTCCGCCGCAACCTCCGCCTCTT CTCTTCCTCTCTCTCCTCCCATTTCCACCACCGCCTCTCTTCCTCTTCCTCTTTCTCACCCTCTTCTCCTTCTCTCACTC CCAAACTCAAACCCAAAGCTTCCCAGCACCAACAACAACAAAGCCACCTTCACACCCAACCTCCCTCCTCCCTCACCACC CACCCATGGCCCGAATGCTCCAGATTTCTCTCCCACATCTCCTCCGTCGGCTACGCTACCACCGCTCCCGAAACCGGCTT CCCGGCGACCGGGGAGTTGTCGCAGCGCGAGGTCAGTGCCTGCTTGGCGTTCGCCCGCGACCGACCGAACCTTCTCCGGT TGCTTTCGATGAGAGATATTGCGGTTGTGGTTGAACATGGCACTCCCTTTCTGTTTCCAGATGCTGAGGATTCCATGAGG AAGATGAAGTCTCTTGTTCAATATGGTGACTCCACTGTGTTGGATACTGATAGGCCAAATATGGTTGACCTAATGAAATT TCTGCTGAGTTATGCAAGTAACCCATCGGCCACTTCAGAAAGTAACAGTCTCTATAACAGGGATCTTGTTGAATCATCTG TCAGAAATCTGTTTGGTGAACTTTTCAAGCTGAGTTACAATGCACCTGGACCTAACTCTTTTGATTCAGTGCAAAATCAA ATGCCTGGTAGATTTGAACGGGCAATGCCTCCTGGTCAAAGAATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGGTG TAATTTCATGAATTTTGCAAGAAATACTAAATGTCTTGATTGTGAGGAAGCTAGACCAAAAAGACAACTAACTGGAGGAG AATGGGAATGTCCTCAGTGTGATTTCTGTAACTACGGGAGGAACGTGACTTGCTTAAGGTGTGACTGCAAGCGGCCTGGC CAAATATCGTTGGGTGCCACCAATCCCGTATCACATGTGGGGTATGGAAATGGAAACAATTCTGATATGTCAGATGTTGA TGCTAGGTTAGCTGCTAATGAAGAGAAGGCGCAGCGTTGGTTTAACAAGGTTTCTCAACTAGACAGTAATGCTGATATTA ACAGTGTGATGGCAGATGAGGATTTTCCGGAAATAATGCCGTTAAGGAAAGGAGTTAACAGATTTGTTGTGAGCACAAGG AAAACTCCATTGGAGAGGAGGTTGGGCAATGCTCAATACAAGAGTAACTTGGGAGATAATGACATTCCCGGGGTTGAGGA TTTTAAAGCTGGCCTTCCCCAATCCGACAAGAAAAACATTGGTGCAGAACAAGATACCAGTAGATACGGCCCACCTTCAA TTGCTAGCAATGCTTCAAATTTCAAAGATGTGAAAGGGAGCAACAGTAGTTCCATGCCTCCCTTTCCATTTTCTTCAGAT GCGCTTCCCCAAAAGTCTGAGAACTTGCGAGCAGAGGATAGAAAAACCGCGCCATTGGGCGCCAATGTTGGATATGTCAG TCCTGGTGGTGACAATCCACACTTTTCTAATAACACTACAAGTGAAAATGTGGAAAAGGAGAAAGAGCAAGCTGAAAAAT CTGAGAGGTGGTTTAGAAAGGTTGTGGAGCTGCATGATGCTTCAGATATGACAAGTGCGGTATCTGATGAGGATTTCCCT GACATAATGCCTATGCGTAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAAGACCGCTCCTTGACATCACCGGCATA CAAGAGACGTTTGGCCGTGGAGCAATCTGGAAACACCAACTTTGTCCCCTTTGTCCCTTTCCCCCCAGATTACTTTGCCA AGAAGGACAAGCAACAACAGGAAGATGGAACAGAATCAACAGTTAGGTCCAGTGTTGAATCATCTTCAATATCGGATGAT GCTAGTGCTAGATCTGGACAGAGTCCAAAACCTTCTGAACAGGGCTCAAATAACAACAACCAAGTTGGTTCTATTCATGG GGAAACTAGCAGTAGATATTCAAGCCAGAGTTTCAATCATGTGCCAAATTTCTCTGGGAGTTCATCCCCAGGCTCAGCAT CTGAGAACCAGAAGCCAAATTTGAGAGTGAGTTCATCTGCAGGCTCACTGTCTGATAACCAGAATGTCAGAGCAGGATGG ACAGGAAAGAGCTTGGAGGGGTCGGCCGTGAAGCCAAATTTGAGAGGGAGTTCATCTGCAGGCTCAGTGTCTGATAACCA GAATGTCAGAGCAGAATGGACAGGAAAGAGCTTGGAGGGGTCGGCCGTGAAGGAACCGGATCCTTTGGACATGTCAGAGG AGGCAAAGGCGGAGAGGTGGTTCCGTCGTGTCTCGCAGATTAAGGATATATCTGAGCTCAGTCAGATTCCAGATGAAGAT TTTCCTTCAATAATGCCTATGCGGAAAGGGGTGAATAGATTTGTTGTGAGCAAGAGGAAAACACCATTGGAAAGAAGGTT GACATCTCAGCAGTACAAAAGAAATCTTCCAATTGTGAACTCGGATCCGGTTAAAAGAGAAAATGAAGGTAGCTAA
Protein sequence (LotjaGi1g1v0649800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGAAPRFLFLLTTPLPPLLRRNLRLFSSSLSSHFHHRLSSSSSFSPSSPSLTPKLKPKASQHQQQQSHLHTQPPSSLTT HPWPECSRFLSHISSVGYATTAPETGFPATGELSQREVSACLAFARDRPNLLRLLSMRDIAVVVEHGTPFLFPDAEDSMR KMKSLVQYGDSTVLDTDRPNMVDLMKFLLSYASNPSATSESNSLYNRDLVESSVRNLFGELFKLSYNAPGPNSFDSVQNQ MPGRFERAMPPGQRIEMKRGDWICPRCNFMNFARNTKCLDCEEARPKRQLTGGEWECPQCDFCNYGRNVTCLRCDCKRPG QISLGATNPVSHVGYGNGNNSDMSDVDARLAANEEKAQRWFNKVSQLDSNADINSVMADEDFPEIMPLRKGVNRFVVSTR KTPLERRLGNAQYKSNLGDNDIPGVEDFKAGLPQSDKKNIGAEQDTSRYGPPSIASNASNFKDVKGSNSSSMPPFPFSSD ALPQKSENLRAEDRKTAPLGANVGYVSPGGDNPHFSNNTTSENVEKEKEQAEKSERWFRKVVELHDASDMTSAVSDEDFP DIMPMRKGENRFVVSKKKDRSLTSPAYKRRLAVEQSGNTNFVPFVPFPPDYFAKKDKQQQEDGTESTVRSSVESSSISDD ASARSGQSPKPSEQGSNNNNQVGSIHGETSSRYSSQSFNHVPNFSGSSSPGSASENQKPNLRVSSSAGSLSDNQNVRAGW TGKSLEGSAVKPNLRGSSSAGSVSDNQNVRAEWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVSQIKDISELSQIPDED FPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYKRNLPIVNSDPVKRENEGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 339 | 339 | 8.9E-247 | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 339 | 339 | 8.9E-247 | – | |
| Phobius | 8 | 16 | 9 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 851 | 830 | - | – | |
| MobiDBLite | 38 | 81 | 44 | - | – | |
| Gene3D | 251 | 290 | 40 | 2.0E-11 | – | |
| SUPERFAMILY | 253 | 287 | 35 | 4.45E-7 | ||
| ProSiteProfiles | 258 | 287 | 30 | 10.387 | ||
| Pfam | 259 | 286 | 28 | 1.7E-7 | ||
| SMART | 260 | 284 | 25 | 5.1E-6 | ||
| ProSitePatterns | 262 | 281 | 20 | - | ||
| ProSiteProfiles | 291 | 320 | 30 | 9.213 | ||
| SMART | 293 | 317 | 25 | 0.3 | ||
| ProSitePatterns | 295 | 314 | 20 | - | ||
| PANTHER | 352 | 449 | 98 | 8.9E-247 | – | |
| PANTHER | 352 | 449 | 98 | 8.9E-247 | – | |
| MobiDBLite | 414 | 482 | 69 | - | – | |
| MobiDBLite | 449 | 482 | 34 | - | – | |
| MobiDBLite | 506 | 532 | 27 | - | – | |
| PANTHER | 521 | 811 | 291 | 8.9E-247 | – | |
| PANTHER | 521 | 811 | 291 | 8.9E-247 | – | |
| MobiDBLite | 615 | 773 | 159 | - | – | |
| MobiDBLite | 624 | 721 | 98 | - | – | |
| MobiDBLite | 731 | 754 | 24 | - | – | |
| PANTHER | 804 | 836 | 33 | 8.9E-247 | – | |
| PANTHER | 804 | 836 | 33 | 8.9E-247 | – | |
| MobiDBLite | 825 | 851 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0649800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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