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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0650500 |
| Transcript ID | LotjaGi1g1v0650500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein SKIP24; TAIR: AT1G08710.1 F-box family protein; Swiss-Prot: sp|Q9CAZ0|SKI24_ARATH F-box protein SKIP24; TrEMBL-Plants: tr|I3S486|I3S486_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0650500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120922162..120926728) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTTTTTGTCAAAATAATAATCAGCTTAATCGAACGTTGAAGCTCGCGGTTGCCGGTGAAGTAGAAAGCGAAGCTC TCAGCCTCTCACGATGACAATCACACCGCAACTCGTCGGAATCCCCAAAATGTCGTCGCTCCCGGAGGAACTGTGGAGGC GAATTCTCGAAATCGGTGTCGAAAGCAGCGGTTTCACCTACAAGGACCTCTGCTGTATCTCCATCTCTTGCCGCCGCTTC CACCGCCTCTCTTCCGATGACTCCCTCTGGAACCCCCTTCTCTCCTCCGATTTCCCTTCCCTTACACCCCCATCTTCTTC TTCTACTTCTCCTTCTGCTAAATCACTCTATAAATTGAGGTAAGATTGGAATTCTGGGTTTCCGATTTTATTTTTTTGGT TTTCTGAGCTTCCAAACATGGCCCCTGTCAATTTTCGATGATTTTATTATCTGGGTATTTATAAAGTTCAGATTTTTATT GATTTGTTTGATGTTTTTGGTGGTGAGATTCGAGAGAGACAAGGAGAGAAGAATAGCAGCTCATAAGAGAGTTGTGCTGA GAAAGGAGAGCCAGGTTGCCGAACATTCTAGAAAGCTCCGCAATATTCAGACACGGGTGGCTGAAGAGTCCATCAAAGCT GGAGAAACTGCAGTAGAGTTGTCCAGTTTGCGTAGGATCAGGTACTTCACTCATGTAGTGCATGTTTTGTAAATTCTTGT ACATTTAAATGGATAGTTAAAATCAATTATATGTAGAGAAGTTTATGTTAGTAGCTTCTCACTGTCAAAATTGATTTAAG CTAATACCATAGTGTTATTTAGGAATAGAAGAGAGAAATGAGAGATATGACATGTGATGTAATAGGAAAAGAATATAGCG GTAGAAAGAAAAAGTGAATGGAAATAGGATGAAAGAGGATGCAGGGTGTGAATGAATCAAAATCCTTCAAATTAATATTA CACCTAGTAAGTTGGTGAATGTATTGGTCATTAAGGGCGTCAAGAAACTGCATTTTTGTAAATTCTTGTACATTTGATTT GATAGTTAAAATCAACTATATGGAGAGAAGTTTATGTGAGTAGCTTCTGACCGCCACAATTGATTTACACTGATGCAAAA GCGCTGTTTGTTAAATATCTTTTGTTCATTGATTGAGGAAATGAACACTTTTACAGTTTTCCCCCTCTATCAGTTCAAGT TGATTACTATGAATGCCCTTGTTTTTATCATAAAAAGTTATAGGGGTGATTGAATTTTTCATTTCCTGGGTAACTACAGA GTTCAGATAGAAATAGAAAAGAGAGAAATGAGAGATATGGCAGGGATGTGATAGGAAAAGAATAGAGCGGTAGAAAGAAA AAGTGAGTGGAAATGGGATGAAATAGGAAATGACGTAGGGTGTGAATGAATCAAAACCCTTCAAATTATTATTACACGTA GTAAGTTGACGAATGTATTGGTCATTAAGGGTGTCAATCAACTGCATTTGACCTGTAAGTGTCTAACCATTGTATGCTGG GGATTATGGAAACTAGTTTAATTAAGAACTTGTTCAATTCGGTTATTTAAGAAGTTTTTTGAAATAAGTTCACAAGAACT TATAATAGGATCATAAGCTATTTTTATAAGTTCTACTAAACACCCATTTAAGTGTTTATGTCATAAGAGAAGCCTAAATA AGAGCTCTCTCAATCAACCCCTTTATCAGTGGTTAAATTGTAGTTTTGCTAGTTTGCCCCCTGTTGTGTTTGGTTTGTGC TATAGGCCTATGGCCTTTAGTAACATTCGTAACTTCATTGTGTATTCTGTTGATAGGATCTTGTGTTTGTTTTTTGTAGA CAAGCCTCTGTAGCTTTGAACGTGTGGCAACCTGAGGTAGTCCGGGGTAGGCAAAAACAGATGGTGGAGCAGTGTGCTGT GCCTGCGGAATCTCGGATTCATGCACTTGAGATGGAACTTAGGCTTTGTAAGCAACAAATAATGGGGCTGGAGAAGTACC ATGTAAGTTGTTGATGTTTCCATATGACTTATCATCTGTAAAGGTTCAAGAGGGTGTTGTTACTTACACAAAATTGTACC AGAAAGATGAGAAGCGCAGGCTTAATATTGCAAAGGAAGAGTTAGAGTCTATGAAGTATCATCCTCTACAGGAACATAAG CCTGTCAGTGGAAGGGAGAATGAGCATAACGTCACGCGGAAGAAGTCAAAAAGCTGCAATAGCTGTGAGGCTCTGACATT AATTCCTCCAATATTTGTCTACTTAATCAAAACTATTGGTTGCCTAAGAATGACTCTCTTTATTCACTGGTTTTTTACCC AAAGAGTCACATCTTCTAGTTTGTTAAATTTCTTTTGTAAATTGTACCTTCATTCCTTCTATATCTTTAGCTATTGTTAC AGTAATGCTATCAATATTGGGATTGCATTGCTTCTGGTTGTTTGTCTTATTGTTCTGTTTGGATGCAAATCTAGTACTAA GGTGTGGTTCTTGATTGTGCAGTACAAGAGAAAAAATACAAAACGTCGTAGATGGATATGCATCTTGCAACAAGTACATA GTGATCTCATTCCCAAGAGGTAGTAATAAACTGCTGAACAACTGTCTATTGTCTGTTGATTTGCTGCCCGAAGAGTTACA CATTCATATGAAAAATATTCTTCACTTTCTCAGGATTCCTTACATGTTCGAAAATCATGTTGCATCTTATACCAGTAATT GATGTGGATGTTTTGTTCCTCTAAATTTTGATGTTATTGGTGCGCTGCAATTTATATTTTCTTTTTCTTGATTGATATTT GATAGATCTAAATGGTCTCTGTAAAGAATTGGTTTTTGATGAAACACTATGGCATTATTTGATTCATGTAACCAATTATA CCTGGTTGAAAAGTGCTTTATAGCAATTGGTGCTGTTATCCTGTTCTCAGTTGATGAATAGTAGGATTTAACTGCTTTAT AGCAAAATTTGAGTCCTTTGTCTGCATTCTTAATTGGGATGGATCATGGAAGTGCGGGAACTGTCCGTCTTTTCTTTCTT CGCTTATTATGGTATGTTTTGGCAGGGAGATGTCGCGTTGGATGAAAAGTAAAATCCTTGGGAGTCGAATTTTGCTGAAT TTTCATTAAAACTGGGAAGTTGTTCCTTCCCTGAAGACTGACTATCCAAATCCTCTGATCATTGCATTTGGTGGATATAA TGTAATAGCAATACGGAATTGAGAACCTGTGGAACTAGGAAAAAAAAGGGTCTTGGAATCATAATGTGTAGCTTGAGAGT TCACATGGCTACTATGAGCCTGTTGGATTCGGACTTGTTGGAGTTTATCTACTAGAAAATGCACTAAATAAGCTCCAATT AGTGCTCTTTGATGCTCATCCAAACGGGTATTAGGTCCATCTTGTGACATGTGGGCTTCATGGAAACCCGTTGAGCTGGA TGGAAGCAGGATCATAAGAGGGAGCACAATCATTAAAATTTTCTGTTCTACTGGTTGTTGATGTTCTTCTGCTTCTGTTT GTATCTTTTTTGCTTAGTTGTATTACTGTCTTCACATAACTGTGTTACAAAGTTTTGGTTATTTTCTTCTGGTTTTGAAG TTATAGCATTTATGATTTAGTACTGCATCCGTATGCTCCATTGAAGGAGATTCATTAAAAAGTGTCATCTTAGTTGGGTA GTTATCATCCCATGGTTCACACCATGTATAGCGTATTACACCTTCTGTGCATGTGTACTATTTTTTAAAAATTTTATTGT AGACATAATATTATACACTTCATATATGGTTGAAAAACTTAAGGTGTTACACCTATCCTCCACGAGGTGTTAGGTGAGTT ATATTCTCCTGTCAGTTTCTCATGTTCACAAGGTACAGGCAAAGCTGCATATTGTCCTCTACTCCTGTAGTGCTGTTATA TAAGATATCATTGTTACCCTATTTACAATTAGCAATAAGATATTCTACTTATATATAAGATGTTTGGCACTCTTCCTCAA GCTTAGAGTATATAAATTATAATGCACCAAACTTGTAACTTATATAACTAATTGTAGGACCTCTCTAAAACTCAGTAAAG CCATCTGCCAAAGCTAACTGTGATGTCCCCTGATATAATCTTCTCTTTAACATAATGGCAATTTGTCTCAATGTGCCTGG TCCTTTCATGAAACACCGGATGTAAATGAGTGTCATCAGTGTACTATCCCCAAATTTTAGCTCTTTAAGTAACTGTTTGA GCCATATAAGCTGATAGGTGGTAGAGTTCATGGCCCATTACTCTTCTTGTAAACTTGACCTTGCCACTAGTTTGTTTCTT GCTTTCCACGAACCACCAATGAAAATGTCAAAGTGGATCTCCTGTTAGTAGGACAACCTGCCCAATTTGCATCGGTGTAT CTTACAACTCGTGCATGATCTTTGTCTTCATACAAGAGATTCTTTCCTGAAGTTCCTTTAGTATTTTTGAATGTGAATTT CAACATCTTAATGCCCTTCACATGGTGAGTTAAAAAATTGACTAACCACGCTCACAGTAAAAGAAATATCTGGATGAGTG ATAGTGT
CDS sequence (LotjaGi1g1v0650500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATCACACCGCAACTCGTCGGAATCCCCAAAATGTCGTCGCTCCCGGAGGAACTGTGGAGGCGAATTCTCGAAAT CGGTGTCGAAAGCAGCGGTTTCACCTACAAGGACCTCTGCTGTATCTCCATCTCTTGCCGCCGCTTCCACCGCCTCTCTT CCGATGACTCCCTCTGGAACCCCCTTCTCTCCTCCGATTTCCCTTCCCTTACACCCCCATCTTCTTCTTCTACTTCTCCT TCTGCTAAATCACTCTATAAATTGAGATTCGAGAGAGACAAGGAGAGAAGAATAGCAGCTCATAAGAGAGTTGTGCTGAG AAAGGAGAGCCAGGTTGCCGAACATTCTAGAAAGCTCCGCAATATTCAGACACGGGTGGCTGAAGAGTCCATCAAAGCTG GAGAAACTGCAGTAGAGTTGTCCAGTTTGCGTAGGATCAGACAAGCCTCTGTAGCTTTGAACGTGTGGCAACCTGAGGTA GTCCGGGGTAGGCAAAAACAGATGGTGGAGCAGTGTGCTGTGCCTGCGGAATCTCGGATTCATGCACTTGAGATGGAACT TAGGCTTTGTAAGCAACAAATAATGGGGCTGGAGAAGTACCATAAAGATGAGAAGCGCAGGCTTAATATTGCAAAGGAAG AGTTAGAGTCTATGAAGTATCATCCTCTACAGGAACATAAGCCTGTCAGTGGAAGGGAGAATGAGCATAACGTCACGCGG AAGAAGTCAAAAAGCTGCAATAGCTTACAAGAGAAAAAATACAAAACGTCGTAG
Protein sequence (LotjaGi1g1v0650500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTITPQLVGIPKMSSLPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNPLLSSDFPSLTPPSSSSTSP SAKSLYKLRFERDKERRIAAHKRVVLRKESQVAEHSRKLRNIQTRVAEESIKAGETAVELSSLRRIRQASVALNVWQPEV VRGRQKQMVEQCAVPAESRIHALEMELRLCKQQIMGLEKYHKDEKRRLNIAKEELESMKYHPLQEHKPVSGRENEHNVTR KKSKSCNSLQEKKYKTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 117 | 116 | 8.5E-8 | – | |
| SUPERFAMILY | 7 | 90 | 84 | 4.45E-12 | ||
| Pfam | 13 | 60 | 48 | 1.9E-5 | ||
| MobiDBLite | 215 | 257 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0650500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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