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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0654100 |
| Transcript ID | LotjaGi1g1v0654100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT2G41060.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O80678|UBA2B_ARATH UBP1-associated protein 2B; TrEMBL-Plants: tr|V7CUL8|V7CUL8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0654100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121368151..121371308) extracted from Lotus japonicus Gifu genome v1.2.
GATGTGATTTATCTCTATATATATACACACAAAATACACACACTTAAAATCGTGTTGAGGGGTTGAGGCTGTGATCGTAA TCTAGTCCAAATCTGAAAACCCTAGTTTCAACCCTCACTCACTCGCTTCACTCCAAGAATCACCAAACGAAGCCATGGTT AACGAATCCATCACCAAGAAGCGAAAGCTCGTCCCCAAATCCTCTCAATCGGCGGAGCTACCGTTCAAGCTGCAGAACAA GTTGGAGGCTGAGGTTCAAGAGTACGAAGAAGTCGAAGAAGAAGTAGAGGAAGAAGTGGAGGAGGAAGAAGAAGAGGAGG AAGAGGAAGAGGAGGGTGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGTGGAAGCGGAAGCGGAGGAGGAAGACGATGAA CCGATCCAGAAGCTTCTCGAACCCATGGGGAAGGAGCAGATCATTAGCCTCCTTGCCGACGCGGCGTCTAACCACCGCGA TGTAGCAGATCGGATCCGTAAGGTGGCCGACGAGGACGTTTCTCATCGGAAAATCTTCGTTCACGGCCTCGGGTGGGATA CCACCGCCACGACGCTGGTTTACGCGTTCCAGCAGTACGGCGCGATTGAGGATTGCAAGGCGGTTACCGATAAGGTCACC GGGAAGTCGAAGGGGTACGGGTTTATTCTCTTCAAGTCGCGGCGTGGTGCGCGTAACGCGCTCAAGGAGCCGCAGAAGAA GATCGGGAATCGTATGACAGCGTGCCAGCTTGCGTCGATTGGGCCCGTGCAGCAGAGCCTGCCTGCGGCGGCGGCTGCGC CGTCGCCGCAGACGGAGTACACTCAGAGGAAGATTTATGTGAGCAACGTGGGAGCCGATCTGGATCCGCATAAGCTGCTG GCGTTCTTCTCGCGGTTTGGGGAGATTGAAGAAGGGCCGTTGGGGCTTGATAAGCTTACTGGGAAGCCGAAGGGGTTTTG CTTGTTCGTTTACAAGAGCCCGGAGGGCGCGAGGCGCGCCTTGGAGGAGCCTCACAAGGAATTCGAGGGTCAAATTTTGC ATTGTCAGAAGGCGATTGATGGACCCAAGGCCGCGAAAACTCCGCAGTATCAACCGCAGCAGGGTATTCAGAGAACCCAG TTTCAGAGGAATGACAACAACGCTGGCTTTCTCGGTGGTGCTGGTGCTGGTGGTGTAGCTGGTTCTCAACCTGGCCACTT GATGGCCCCTGCAGGACCTGGGATTGCTTACAGTCAAGCTGCTGCGGCGCAGGCGGCGGCACTGAACCCGGCTCTGGGGC AGGCGTTGACCGCGCTGCTGACGTCTCAGGGTGCGCTGGGTCTGACTAATTTGTTAGGAGGCCTCGGAACGAGTGGTGGG ATTAATCCGGTTGTGAGTTCTGCTGCTGCTGCGGGGCATGGCGTGCAGAGTGGTTACAGTGCCCAGCCAAGTATAAGCCC TGGTGTTATTGGAGGGTATGCAAGTCAGCTCGGGTTGCAGGCGCAATATCAGAACCAGCAGACCGGGCAGGGTGGCACTG GGAGAAGTCAATATGGTGGTGCTCCTTACATGGGGCAGTAGGTATGTACCAGGTATGGTTTATTGTTGGTTATTATGTTC TATGTTGATTGCATAGTATCTGCTCTGATTGCTCACTCTTGTTTGTTTACTAGTTTTGTGCTCTAGAATTACATGTACTG TAAAGAAAATAATTTGTTCATATTTGTTGATTGTTGGAGTATAATTGATAGGAGTAGTTGATTCCATTACTGTAGGCTCA TAAAACAATCATGTTAGACTAATATGAAATTTTTGAGAGATTGACAAATTCCTTCTATGTGGCCCTGCATAGGATGATAG GAAGCTTGTTTCTAACCCTGTTATGTGAATCATACAGTGGTTTAGATTATTTTTTACATGAAAATTTGAAATCCTGGGAT GGAGTTGAGCAATGAATATTTTAAGGTTATAGCATCTCCTAGAGTTCTTCTAGGAAGCCACTCTTATTTGAATGTTGCTT ATAGTTTCGAGTCTGCATTGGCTTTATTCTGAAATCCTTGTTGCTGCATATGTCTCTCTTGTTTGGTCTAACATCAATGA TCTTGTCGTATTCTTGCATTTGTGTGCGTTGAGGAAGCGTGTCAAGATTCACTCATTTTATTTATTCGTTTTCACGGGAT TTCTTATGGTCTGTTTGGTTCAGTATTTCCGTTCCTGACTGATGGAAAATCTTTTTCTTGGTTTCTTCTATCTACAGCAT ATTTATTGCCACACTATATTTAGTTGGTTATTGGTTTTATAATTAAGTTGGCTAATGTTTTCAACACAGTATTTAAAAAA AACTATTCCACAACTGTGATATTCTGGACATGTTGAATTTTCAAATTGTTTGATCTTGGTGCTTTCAATAACTCTTAATC AGTTTTGCTAAAGCTTGGTTTTTGGACCCTTACTTTCTCTTTTCCCCTTAAATTGTTTTCATGCTTTTTTATTGATTTTG CAGATTCTACATAAGTGCATCAGTGTTTTATTACTGGCCTGGTGATTCTTCTGAAGTTTAAGGAGCTGATGCAATTGGCG TGTTTATAATGAAACTTTACTTAGCACTATGATCAGAATATTTAAATTATCTAACAGTGTTCTGTTTTCGCCACCTACTC TTCACCTTTTATTCCATTTCAAAACGTTGTATTATTTTAACTTTAGTTTGTCTTCTAAAAACTTATTGAACTGTTTTTGT ACCTTAAATTATAGTTTTATTGGTACTATGAGGAGTTCGGGATGCTTATCAAATTATATTTTGAAATTTATGTTTATGTG GACCATTTGGGCTTTCAACTTGGTCTAAGAGGTGCTTGATAGTCTTTTATATGGGTATTTTAAATTTTTACCAACTTTTT TTATTATTTTATTTATCGCTTTCGTACTTAACTTTTCCTTCGTTTTTGGACACGGAATGATTGTGTTATGAAATATCCAT AATATGCTTAATGCTGTTTGTCATCAACACTCCCCCTTGGAAAAATTGGTTATCAACCAATTTTTGTGTAGTTCTTTCAT GGCTTTACTTCTTCTAGAAGTTTGTGAACCTAATTTTGTGCAGTTATTTTGCAGGTTTGATAGCCATACTTATATAAACA TTTGCCAATAATAAAATCAGTTTAATTAAAATAAACAA
CDS sequence (LotjaGi1g1v0654100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAACGAATCCATCACCAAGAAGCGAAAGCTCGTCCCCAAATCCTCTCAATCGGCGGAGCTACCGTTCAAGCTGCA GAACAAGTTGGAGGCTGAGGTTCAAGAGTACGAAGAAGTCGAAGAAGAAGTAGAGGAAGAAGTGGAGGAGGAAGAAGAAG AGGAGGAAGAGGAAGAGGAGGGTGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGTGGAAGCGGAAGCGGAGGAGGAAGAC GATGAACCGATCCAGAAGCTTCTCGAACCCATGGGGAAGGAGCAGATCATTAGCCTCCTTGCCGACGCGGCGTCTAACCA CCGCGATGTAGCAGATCGGATCCGTAAGGTGGCCGACGAGGACGTTTCTCATCGGAAAATCTTCGTTCACGGCCTCGGGT GGGATACCACCGCCACGACGCTGGTTTACGCGTTCCAGCAGTACGGCGCGATTGAGGATTGCAAGGCGGTTACCGATAAG GTCACCGGGAAGTCGAAGGGGTACGGGTTTATTCTCTTCAAGTCGCGGCGTGGTGCGCGTAACGCGCTCAAGGAGCCGCA GAAGAAGATCGGGAATCGTATGACAGCGTGCCAGCTTGCGTCGATTGGGCCCGTGCAGCAGAGCCTGCCTGCGGCGGCGG CTGCGCCGTCGCCGCAGACGGAGTACACTCAGAGGAAGATTTATGTGAGCAACGTGGGAGCCGATCTGGATCCGCATAAG CTGCTGGCGTTCTTCTCGCGGTTTGGGGAGATTGAAGAAGGGCCGTTGGGGCTTGATAAGCTTACTGGGAAGCCGAAGGG GTTTTGCTTGTTCGTTTACAAGAGCCCGGAGGGCGCGAGGCGCGCCTTGGAGGAGCCTCACAAGGAATTCGAGGGTCAAA TTTTGCATTGTCAGAAGGCGATTGATGGACCCAAGGCCGCGAAAACTCCGCAGTATCAACCGCAGCAGGGTATTCAGAGA ACCCAGTTTCAGAGGAATGACAACAACGCTGGCTTTCTCGGTGGTGCTGGTGCTGGTGGTGTAGCTGGTTCTCAACCTGG CCACTTGATGGCCCCTGCAGGACCTGGGATTGCTTACAGTCAAGCTGCTGCGGCGCAGGCGGCGGCACTGAACCCGGCTC TGGGGCAGGCGTTGACCGCGCTGCTGACGTCTCAGGGTGCGCTGGGTCTGACTAATTTGTTAGGAGGCCTCGGAACGAGT GGTGGGATTAATCCGGTTGTGAGTTCTGCTGCTGCTGCGGGGCATGGCGTGCAGAGTGGTTACAGTGCCCAGCCAAGTAT AAGCCCTGGTGTTATTGGAGGGTATGCAAGTCAGCTCGGGTTGCAGGCGCAATATCAGAACCAGCAGACCGGGCAGGGTG GCACTGGGAGAAGTCAATATGGTGGTGCTCCTTACATGGGGCAGTAG
Protein sequence (LotjaGi1g1v0654100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNESITKKRKLVPKSSQSAELPFKLQNKLEAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEVEAEAEEED DEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDK VTGKSKGYGFILFKSRRGARNALKEPQKKIGNRMTACQLASIGPVQQSLPAAAAAPSPQTEYTQRKIYVSNVGADLDPHK LLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYKSPEGARRALEEPHKEFEGQILHCQKAIDGPKAAKTPQYQPQQGIQR TQFQRNDNNAGFLGGAGAGGVAGSQPGHLMAPAGPGIAYSQAAAAQAAALNPALGQALTALLTSQGALGLTNLLGGLGTS GGINPVVSSAAAAGHGVQSGYSAQPSISPGVIGGYASQLGLQAQYQNQQTGQGGTGRSQYGGAPYMGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 83 | 83 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 25 | 461 | 437 | 3.0E-174 | – | |
| PANTHER | 25 | 461 | 437 | 3.0E-174 | – | |
| Coils | 27 | 82 | 56 | - | – | |
| Gene3D | 28 | 206 | 179 | 1.8E-24 | ||
| MobiDBLite | 35 | 83 | 49 | - | – | |
| SUPERFAMILY | 117 | 204 | 88 | 8.33E-21 | ||
| ProSiteProfiles | 125 | 202 | 78 | 13.532 | ||
| SMART | 126 | 198 | 73 | 4.4E-19 | ||
| Pfam | 127 | 193 | 67 | 6.6E-14 | ||
| Gene3D | 207 | 311 | 105 | 5.1E-16 | ||
| SUPERFAMILY | 213 | 320 | 108 | 1.3E-19 | ||
| ProSiteProfiles | 225 | 308 | 84 | 12.458 | ||
| CDD | 225 | 300 | 76 | 1.49161E-30 | – | |
| SMART | 226 | 298 | 73 | 9.5E-15 | ||
| Pfam | 227 | 295 | 69 | 1.0E-9 | ||
| MobiDBLite | 447 | 468 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0654100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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