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LotjaGi1g1v0661300.2

Overview

Field Value
Gene ID LotjaGi1g1v0661300
Transcript ID LotjaGi1g1v0661300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 2-isopropylmalate synthase 2; TAIR: AT2G26800.5 Aldolase superfamily protein; Swiss-Prot: sp|O81027|HMGCL_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial; TrEMBL-Plants: tr|A0A0R0EW28|A0A0R0EW28_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0661300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:122201357..122206449) extracted from Lotus japonicus Gifu genome v1.2.

ATGATAGATGCGCAAAAGAGTTCTCAAGTAAGGTGCAATGATCTATTTTATACTTTTTTTCCCTGTTGTGTATTTTAACT TGAAATTTGTTGTTAAGCAAGGAAGATAGATGACACATGCTTAACCATTTAAGTATATATAGCAGCCTAGTTGAATTGAA CTTATTTTTCTTTAAATGAAAAAAAAATGTCATTTTTATTGAAAATTTTCATTTTGCACATTTTGATAATTATGCCACAT TTTTATTGCCCTTTTGTTTTAGAATTTATGACTAATAATACTTACAATACGATGCTTCAGCTCCTTAAAAGTATTCCAGA CTTTGTAAAGATAGTGGAGGTTGGTCCAAGGGATGGATTACAAAATGAGAAGGTTACTGTTCCTACCGATGTAAAAGTTG AATTGATAAAACTGCTAGTTTCTTCTGGGTTGTCTGTTGTTGAGGCGACTAGTTTTGTCTCACCAAAATGGGTGCCCCAG GTAAGAGTAGATTTATTTTTCCTTGGGACAGTCAATGATTTGTGATTTCCCTCTTATTACTGTCCGATACTCTTTTAATA CTCTTTCTTGTTATTTTTTGTTTTGGTAATTGGTATTATTTTGGCCATATTTACATGTTTCTTATTATATGATATATAGT CTGTTAATTATCAATTGAATATATATTCAAAGATTCTTGTCTTGATTAATGTTCCCGTAATTCTCTTGTGAAAGTTTTAT TTTTCAGTCATATTACCAAGAATAACGACTGAGTCTTCTCTTTGCTTGTTGCATGAGTTGGTCAGGTTTCTTGTGCACGT TATCATCTGTACCTCATTTTGAAAATTGTTCTAAAAGCATACTCTAGATTATTAGTCACAGATAGAAAGAGACCCAGAAA AGCTATTGGTCAAATCATTAATAAATATTTATATTTAAATATTTTTTCATTAGACTTGATTCTCAATAGGACATCGCAGT GCCATTTAATCCATGTAGCACCTAATGTGGGAAAAGGCTTTGGTTGTTATTGATGGCACAAGGTAGTATTTGGAACTTGG AAGTTAATGAGTGATCATGAAGATCTGTGGCATGGGTTAGTGGCTTCTGTAGGATTAAGCAGGACTGTAATCCAATTTCA AGTAGAATTGTGAATAGAAATGTAGGGTATTATGTTTCTTGCTTTTGTTAATGAGTGGTGACCATCTACTGGGTATTTTT GATGAGTAATAATCGCAAATATAAGTTTTCTGTGAGTTTCTGCCCGATTTGGTTTGAGCATCAGCTCTTCAACATTCACC TCTAAGAATGCAAGTAAGATTCACTTTTTTTTAGTGACTGAGGCGTGACCTATTGATTTGTTGGTCTACGAGTAAGGAAA ATGTACAGTTACAGATAGCAAGAATTGATGTTCAATCGATTTTAAAGCTTGTTATAGTTTTGCAAAAAAAAAACACTTCT GTTTATGGGTAATCATTGTTATGTCAAATACCCACATGTATGTGTGCTTGTTTGAACTTTTAGTAAGTACTGATTTTTTC CAGAAAATTCAGATTAAATGTCAAATTTTCTTTAATAAGGATTGGCCAACTGCACATTTGTTCAAAGAGTGTTTAATTTT TCTAGACAATTGTCCAACTAGGAAAAATACAAAGTTTTCTAACTTTTTGCCTTCATATAATAATAGGAGGAAATATTTTT AATAAAACACCTATTTTTGTTGATTTTTTCCCTTGAATTCTTCACAAGACCTGCTGAAGTGTTATTTTGTATTGTACTCT CAAAACTGTATTTCAACCCCACTTTTTTCAGGCCTAGAGTTTAATGAATCATTTGACCCTCTGACCAAATAATTTCACAT ATTTATAACTTAATTCAGTTGGCAGATGCAAAGGATGTATTGGCAGGAATTCAAAATGTTGAAGGTGCTAGATTTCCTGT CTTAACTCCAAACCTCAAAGTAAGAATTATAAAGTGAATAGTAAAATTATTTTATTTAGAATTTGTTGATGGGCATGATC ATCTGATCCACTTTCTTCCAGGGTTTTGAGACAGCTGTTGCTGCTGGAGCTAAGGAAGTCGCTGTTTTTCCTGCAGCATC TGAATCATTCTCTAAAGCAAATCTGAATTGTGGCATTGAGGATAATCTCACTCGTTGCCGTGACATTGTTTTAGCTTCTA GAAGCCTCTCGATCCCAGTCCGTGGGTATGGTTTTTGAGTAATATGTAGTAGTTAGTAGAGATGGATAAATTTTAGCTTT TTCTGAAATTTCGTTTTTCACCAGTTTAAGCTAAATAAGATTTACATGTATGGTCAATACTTTTACTAGATACATCCTGT TTTGAAAACAAAAATGGTGTTCACATTTTTCTGACAATCTTGAAGCACCACTTGTCAGCTATCAATTTTTTTTGACTTTG CTTGGATTCACATGGCTGTCTAAAGAATAGGTGATTTAGATCTGTTAGTGGAAGAATAACTCTTGAGCTAAGTCCCTCTT GCCATGTCAACAGTTTCATTTAGCTGTGACATCAGGTCAAAGGAAAGGTTTTGATTTCTATTTCATCTGAAATTGAAATA GATGCTGGTTGGTTTTGTTAATTACAGTTGATGGCATTCTCATCATCAGTATACTGTCAACCATGATGTTGAAAGATGAT GGAATGTGTGTTCGGATTAACTTATTTTGAGGAAATAACCACTTTTTTTCCAACTTCCTGAGGGAGCTTTTTAAAAAAAG GTCTCCAAAATGAAGCAGAAACAAAAAATGATTTGGCACGTAATAGTGTGTCCTGGATTCCAAATTGTCCTTGCTAGAAT CTGTTAATTTTTCCTTCAAATTACATTGATCTTGAAGCAGTATTCTGTTGATCTTAAAGAAGTACTATGTTGATCTTCCC TCTACTTTCACATTCATTTAGCATGTTATATCATCAGTCATGTGACTGATTCCATACTACAGATATATATCTTGTGTTGT GGGATGTCCTCTGGAAGGAAAAATTGCTCCAACAAAAGTAGCTTACGTGGCAAAATCACTTTATGAGATGGGGTGCTCGG AGATTTCACTAGGGGATACAATTGGTGTTGGCACACCTGGTAATGTTTCTTTGTATTTAATGTCACTTGTGGTTTTTTGA GCAATTTCGGCTTTGATTGCAGTACCGGTATATGTATATGACATGTTAAAAGGCTATGGATGCTCTAATGTTGTTTCAAT TGTGTAAATGATATTCTAATGTACAAGATCCTGTTTAATAAAACAGAAAATTTCTAATTTTCCATGTTAAGGTAATGTCT AGAACTAGTTTCATTTTCTTATCTTAACTGTTTTAAGAAGGAATGGGATAAGATGTGGTATAATCTGAGGGTTTTATGAT GGGACGTCTAAGGTGATTGAGATCTGTGAAGTGAGTAAAAGAACATCTTTCTGTTAGTAAAGTAAGTAACTTTCTTAAAT TTTATGAATTTAATGGAAGTTAATGGTGTAGGCTTGTAGGGCAGTTTCATATCAGCTCTAGTAATAAACAAAGCATAGAA GATTAACTAATTGTCTGTAGTCAAAACTTTCATATTAATCTATTATACTTCACTGGTATGGTCCTATCCTAGTTGGTTTG GTTTATCAAATCTTCTTATTTGACTTAATCTTACTCATGTTTACAGGTACGGTCATTCCAATGCTTGAAGCTGTTCTTGA TGTTGTTCCTGCTGACAAGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATACTCTCGTTTCACTGC AGGTAAATAAATTTTTTCCTTACGATGGTAATGTTTTATTCGGGCAGGTTGCTTGAATATGATTTTTTATGTTAAGAGTG TAGTTATGGAGGGTTTTGGATTCCTCTTATCAAAATGGATGACGTGGATTGTGTTCTTGTCCCTCAGTAATAAATGTGTT CATTCTCTGATTTGATGAAATTGGGTTAACTTCCCATAACACATTACTGAGATCCGATTTGTTTCTTTTACCAAGCAAGA TAATATTGTCTTTGCAGTCTATAGAATTCTAGTTCTTAAGCCACATGTTCAACATGGACGTGCATGCAGAAAACTATCTC ACAACCCGTGTTTTAAATTCTGAAAACCAGTGCTTTGCGGTTAACTCCGAAAATGCCAACATGATGCCACTATCTTTAAT TTTTATATAGTTTATATAATTTAGACTATTTGCATATATAAATGCTCAAAAATGATAAAAAAAAATACTCAAGATTCATG ACATTCATAATTAACAGTAAAACATCATAGTGTGATAAACAAAACATAAAAGTAAATAACAACAAAGTCAAGGTAATAGA GAAGTTTAAGCTTTATCTAAGGCTTAAACTAAACTTTCTAAAAACATGAGAAATTCAAATAAAAGTTTGCTAAATAGGAA TCACCAATCATCCTCATATTCTATATCACTTTCACCACTATCACAGCTTTGTCATTAGATGGGTCTACTTAGATTGAGGA AGGAAGAAAGGTATGAGGAATTTTCTGAGACCCTTTTCAATAAGTTTCTGAAGAAAAAATACCCTAATGGTTACTTTCTG TTCTGAGGGCAGTTGAGTTTTTGCCAGTTCCACTTAATAGGGGCCAGGTAGCCCCATGAAGACTGCTTTTTCCGCCGTTT TAGTGGCCGTAACCGCTGCTATACTAACTGCGATGCAAGTACCAACCAAGAGCGGCCAGGGGCCACAACGCGCCACAATG TTGTTATAGCGTGTTATAGACAACTCTGCTTGTGACAACCTGACAGACAGAATGAAAATCTCAACTGCTTTGAAATTTCC ATTACAATTCCTATTTGGTTAAACCTGGTCATGTATTTTTGTAGATGGGGATCAGCACTGTGGATTCATCTGTCTCTGGT CTTGGAGGTTGTCCATACGCCAAGGGTGCAACTGGGAATGTTGCCACCGAGGATGTTGTTTACATGCTGACCGGGCTCGG AGTGAAAACCAATGTGGACCTTGGAAAGCTTATGCTGGCTGGGGATTTCATCTGCAAGCATTTAGGGCGTGCATCAGGTT CAAAAGCTGCAACTGCCTCGAGTAAAGTTACAAATCATGCCTCCAAACTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0661300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAGATGCGCAAAAGAGTTCTCAACTCCTTAAAAGTATTCCAGACTTTGTAAAGATAGTGGAGGTTGGTCCAAGGGA TGGATTACAAAATGAGAAGGTTACTGTTCCTACCGATGTAAAAGTTGAATTGATAAAACTGCTAGTTTCTTCTGGGTTGT CTGTTGTTGAGGCGACTAGTTTTGTCTCACCAAAATGGGTGCCCCAGTTGGCAGATGCAAAGGATGTATTGGCAGGAATT CAAAATGTTGAAGGTGCTAGATTTCCTGTCTTAACTCCAAACCTCAAAGGTTTTGAGACAGCTGTTGCTGCTGGAGCTAA GGAAGTCGCTGTTTTTCCTGCAGCATCTGAATCATTCTCTAAAGCAAATCTGAATTGTGGCATTGAGGATAATCTCACTC GTTGCCGTGACATTGTTTTAGCTTCTAGAAGCCTCTCGATCCCAGTCCGTGGATATATATCTTGTGTTGTGGGATGTCCT CTGGAAGGAAAAATTGCTCCAACAAAAGTAGCTTACGTGGCAAAATCACTTTATGAGATGGGGTGCTCGGAGATTTCACT AGGGGATACAATTGGTGTTGGCACACCTGGTACGGTCATTCCAATGCTTGAAGCTGTTCTTGATGTTGTTCCTGCTGACA AGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTTTCAAATACTCTCGTTTCACTGCAGATGGGGATCAGCACT GTGGATTCATCTGTCTCTGGTCTTGGAGGTTGTCCATACGCCAAGGGTGCAACTGGGAATGTTGCCACCGAGGATGTTGT TTACATGCTGACCGGGCTCGGAGTGAAAACCAATGTGGACCTTGGAAAGCTTATGCTGGCTGGGGATTTCATCTGCAAGC ATTTAGGGCGTGCATCAGGTTCAAAAGCTGCAACTGCCTCGAGTAAAGTTACAAATCATGCCTCCAAACTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0661300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIDAQKSSQLLKSIPDFVKIVEVGPRDGLQNEKVTVPTDVKVELIKLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAGI QNVEGARFPVLTPNLKGFETAVAAGAKEVAVFPAASESFSKANLNCGIEDNLTRCRDIVLASRSLSIPVRGYISCVVGCP LEGKIAPTKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVIPMLEAVLDVVPADKLAVHFHDTYGQALSNTLVSLQMGIST VDSSVSGLGGCPYAKGATGNVATEDVVYMLTGLGVKTNVDLGKLMLAGDFICKHLGRASGSKAATASSKVTNHASKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR42738
6 317 312 1.8E-182 –
PANTHER
PTHR42738:SF12
6 317 312 1.8E-182
IPR030020
Gene3D
G3DSA:3.20.20.70
11 310 300 2.6E-128
IPR013785
SUPERFAMILY
SSF51569
13 302 290 1.71E-70 –
Pfam
PF00682
18 291 274 7.5E-55
IPR000891
ProSiteProfiles
PS50991
18 285 268 36.39
IPR000891
CDD
cd07938
20 293 274 3.76077E-171 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004419
Molecular function Hydroxymethylglutaryl-CoA lyase activity Catalysis of the reaction: (S)-3-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA.
Subterm of
GO:0005739
Cellular component Mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
Subterm of
GO:0046951
Biological process Ketone body biosynthetic process The chemical reactions and pathways resulting in the formation of ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone. Biosynthesis involves the formation of hydroxymethylglutaryl-CoA, which is cleaved to acetate and acetyl-CoA.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0661300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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