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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0662400 |
| Transcript ID | LotjaGi1g1v0662400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT2G26850.1 F-box family protein; Swiss-Prot: sp|Q6NLB1|FB118_ARATH F-box protein At2g26850; TrEMBL-Plants: tr|I1N8R4|I1N8R4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0662400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122352686..122356110) extracted from Lotus japonicus Gifu genome v1.2.
GTTTAATTCTTCAAAACCCATCATTCAATTTTAGATAACTGTCACTTTCTCCTCTTCTTTACACTAGCATGTCATTAAGA CACACACAAAGGGTGTTGAGTTGTGATTGTGATAAAGTTTGTGCCTTTACTCATCTAAGTTTTTCCATATTTTAGAACAA AATATGGTTTTGGTAAGCTTTTGAAGTTTCCATTGTTGTGTAACTTCACCAACTTGGCTTATATTGCCTTCAACCCCCTA GATTTCAGCTTGTTATTCACAGAACCGTGTGATTAGAAACTTCTCCGTGCATGTTTAGAAATTTTTCTACGATTGACTCT GAAGTCAAAATCATTTTGTGGAGAAGCTTCTATAAGTAGAGAAGCTTCTATAAGTAGCTTCTGTGTGAATATTGAGAGAA TCGAAATTGATCCAAACACACTATGTATTGATTTTGAATTCTGATCCTCCATGTCTCTTTTAGGTGTCAGGGTCATTGTA ATCTAATCAAATGTAATGCTTTGCTTCCTCTCTTTCAAGATCACAACTAGAGGCCAACACTTATTTAAGGTGCATTCTAA GTGTTTATTTGGTGCTCTATAAGGAAAGTGCTTTAACTCACCAGCTGTGTAAGCTTGTCGGTTGTGTAGCCTACACAAGT CCTTCTCTGAAAGCCTTGCCTTGAGCCACTGAGCTAGACAAAGGCTTTGGTTTGGCCAAACCACATCATTCTCATCTTCC ATTGGTGGAGCTTGTTTTTCCCTACTACAAAAACATTTGCTGAAGGTTTCAGCTAAACATTTTTTGAAGTTTTCACCTGT GCTGCTCCTTCTGCCAATATCAAATAAGCCATTTTGATAAACCTCCCATTACAATGCTTTACTTCATTATATCCTTTGTC TCCTTTGTCCTCCTTTCCAAGTCCTTTACTAGTAAGGAAAGAGGGACAAAACTAGTTTCAACAGGGTTTTTGAGGAACCT GTCCAATTTTCTAGTTTCTAGGCTCAGGACAGGAAACATTCCTTCTAGTTTTTCTCATTTTTCTCTTGGTATGCCATTGA GAAAGAAGAGTTTAGTATCTAAAGTGGAGAATGGGGAAAAGGGTGACAAGGTTTGTCTCTTGGATTTGCCTGATTTGCCA TTGGAGTGTATCCTTGAGCACCTTTCACCATCTGAGTTAACCAATGTGGCAGCAGTGTGCACTTCTCTCAGAGGTAGATG TCTAAGTGATTATTTATGGGAGAAACACATGGAGAGGAAATGGGGTAACGTGTTTAGTGATGCTGCTTATAGACAATGGA AAGTACATCTAGCTTCCAGAGACAGATTGAAGATCTCAAATCAGCACAAGCAGAAAGGAATGTTTGATTTCCTTCATGGT TTTCACCCCTTCTTATGGATCAAATCAAAATCAGGAAAAGCTAGACAATCAAGGACTTCATTGCCAGATGATTCAGTTTT TGCTCTTTATCTTTCTCTTGAGAGTGGGAAATTTTGGTTCCCTGCTCAAGTTTATAACCGCGAGGTAACTAGTTTCAGAT AATCTGATTTATGACATGTTAGTAGCAATGCTTCTCTTAAACTTAGTGATTAGAAGTTACCAATATTTTGCTTTTTGGGA ATCTATGTAATTATTTCACACTTTTCTTTTTCAGAATGGTCATGCTGGGTTCATGCTCTCATGTTATGATGCACAACTTT GCTATGACTCTAGAACTGACACCTTTCAGGCAAGGTATGTAGAAAAGTTTACTCCTTCAGAGCTTAGATGCCAATGTATT TGTCTACCTGTTTAACTGTTCCTTTGGTTAGTTAGAATTTGAAGCTATACAAAAAGTTTAGCAGCTTAGCATGTTTGCAT CAGCTTCTATTTCTTCATAATCAATTTTGAAACTTAATAGCTACTCACAGAAGCTTCTCCGCATAATTGATTATGACTCC TGAATCAATTGTAGGATCTCTACATTTTCACAATTTTTTTAAAGGTTGATAAGGTCATCCCTCTCTTAACATCAAGAATT TCATGTTTTCTGACAGGTATTCACCTCATGGGAGATGGACAACGGAGGAAAACATTCAATGGGACCGGTTGAGAGTACCA CCAATTGACTCTTCTCCAAATGTTCTTCATACCTCTGACTGTTTGGATGACTTAAGGCCTGGGGATCATGTTGAGATCCA GTGGAGAAGAAACAAAGAGTTTCCTTATGGTATTGTGCACTGTCAAAACTTCTATTTACTATAGATTTTTGGATTTTGGT TACTGCAGTCATAAATACTCTACATTCACGCATTCATGGTATTTGGACTGCACGATTAAGATTGGACGACTCAGATTCGG TGATTGTGTGAATGTAGAGATTCCGACTACTATAGGGGATCCATTACCTAGATTTTTAGCTGCTATCAATGCTTCTGACT TGTCGAAATATTTTCTAAATTATCCTGCAACTGGGTATCATACTTTTGTCAATAACAAATATTAGTGTTAATTTGGTCAT AATATGTTTGATTTTCTTCATGTAATAATTTTTGGAGTGCTTTGTTGTAGGTTGGTGGTATAGTGTTGTAGGTCATTTAG AAACATGTCAAGGGATTGGGAACCATTGTCATTGTCACAATAATGGTAAGAGAATCCACTGGTGCCCTTTTGAAATTGGG TTTTCATTCTATTGTATCTTGTGGTAAACAAGATTGAACAGAGAATCTGTTTGGATGTAGACCAAAGAGTTTATATAGTG TTGTTTTTAGTAGATAAGTCTCACTAAGTGTTCTTTGGTCCATATCCAAACAGGCTCGAAGTTCACAAAATTAAACAATG ATGTTGTGAATTGTGATATTTGCTACACAAAGTTTTAGAAAATTAACTGACAAAAGAAGTGTTGTTGACAGATATGGTGA TTTTGGAGTTCACCCAATACTCAGCAGGGTCCAGATGGAGACAAGTAGTGATAAACAGGAAACATCATAGAGAACAAGGC AATGAAATTGAAGGCTTCTATGGGGGGATCAGGAAGCTGCAAAGCAAGGAAGAAATTACAAGGTGGAAAAACTTGTGGCC AACAAAAACTGTGGAATAGCATGATTGATAACTTAGGTGTGTAGATTAAGTAGTCCACCTTCCTCAAATGTGAATGTGAA GGTAAAGGATTAGTTTGTCAAAGAATGATGTCATTCCTAACAAAACAAACAAAGGCATAAAAGTCGAGAGAGTAGTGTGG AAGGATTTATGACGGTAACTTGTACCACATCAATTTTTAAACATTCATATCTACTTTCAATTTTATCTCATCTTTTTTTA TTTTTTCTTTGTTTTTATCAGATCACTTTCCATATCTCGCATAATCTCTTTAATTTCTTTATCTCATATAATCTCTTTAA TTTCTTTATCTCATTAGGTTTTTCTTTTTTATAAGCATCTCATTAGGTGAATGTGTAAATTGGTG
CDS sequence (LotjaGi1g1v0662400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTACTTCATTATATCCTTTGTCTCCTTTGTCCTCCTTTCCAAGTCCTTTACTAGTAAGGAAAGAGGGACAAAACT AGTTTCAACAGGGTTTTTGAGGAACCTGTCCAATTTTCTAGTTTCTAGGCTCAGGACAGGAAACATTCCTTCTAGTTTTT CTCATTTTTCTCTTGGTATGCCATTGAGAAAGAAGAGTTTAGTATCTAAAGTGGAGAATGGGGAAAAGGGTGACAAGGTT TGTCTCTTGGATTTGCCTGATTTGCCATTGGAGTGTATCCTTGAGCACCTTTCACCATCTGAGTTAACCAATGTGGCAGC AGTGTGCACTTCTCTCAGAGGTAGATGTCTAAGTGATTATTTATGGGAGAAACACATGGAGAGGAAATGGGGTAACGTGT TTAGTGATGCTGCTTATAGACAATGGAAAGTACATCTAGCTTCCAGAGACAGATTGAAGATCTCAAATCAGCACAAGCAG AAAGGAATGTTTGATTTCCTTCATGGTTTTCACCCCTTCTTATGGATCAAATCAAAATCAGGAAAAGCTAGACAATCAAG GACTTCATTGCCAGATGATTCAGTTTTTGCTCTTTATCTTTCTCTTGAGAGTGGGAAATTTTGGTTCCCTGCTCAAGTTT ATAACCGCGAGAATGGTCATGCTGGGTTCATGCTCTCATGTTATGATGCACAACTTTGCTATGACTCTAGAACTGACACC TTTCAGGCAAGGTATTCACCTCATGGGAGATGGACAACGGAGGAAAACATTCAATGGGACCGGTTGAGAGTACCACCAAT TGACTCTTCTCCAAATGTTCTTCATACCTCTGACTGTTTGGATGACTTAAGGCCTGGGGATCATGTTGAGATCCAGTGGA GAAGAAACAAAGAGTTTCCTTATGGTTGGTGGTATAGTGTTGTAGGTCATTTAGAAACATGTCAAGGGATTGGGAACCAT TGTCATTGTCACAATAATGATATGGTGATTTTGGAGTTCACCCAATACTCAGCAGGGTCCAGATGGAGACAAGTAGTGAT AAACAGGAAACATCATAGAGAACAAGGCAATGAAATTGAAGGCTTCTATGGGGGGATCAGGAAGCTGCAAAGCAAGGAAG AAATTACAAGGTGGAAAAACTTGTGGCCAACAAAAACTGTGGAATAG
Protein sequence (LotjaGi1g1v0662400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYFIISFVSFVLLSKSFTSKERGTKLVSTGFLRNLSNFLVSRLRTGNIPSSFSHFSLGMPLRKKSLVSKVENGEKGDKV CLLDLPDLPLECILEHLSPSELTNVAAVCTSLRGRCLSDYLWEKHMERKWGNVFSDAAYRQWKVHLASRDRLKISNQHKQ KGMFDFLHGFHPFLWIKSKSGKARQSRTSLPDDSVFALYLSLESGKFWFPAQVYNRENGHAGFMLSCYDAQLCYDSRTDT FQARYSPHGRWTTEENIQWDRLRVPPIDSSPNVLHTSDCLDDLRPGDHVEIQWRRNKEFPYGWWYSVVGHLETCQGIGNH CHCHNNDMVILEFTQYSAGSRWRQVVINRKHHREQGNEIEGFYGGIRKLQSKEEITRWKNLWPTKTVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 388 | 388 | 9.5E-193 | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 388 | 388 | 9.5E-193 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 388 | 369 | - | – | |
| Gene3D | 65 | 158 | 94 | 1.2E-8 | – | |
| ProSiteProfiles | 79 | 125 | 47 | 10.69 | ||
| Pfam | 82 | 125 | 44 | 7.9E-8 | ||
| SUPERFAMILY | 82 | 151 | 70 | 5.89E-11 | ||
| SMART | 85 | 125 | 41 | 0.002 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0662400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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