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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0667200 |
| Transcript ID | LotjaGi1g1v0667200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT3G56970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9M1K1|ORG2_ARATH Transcription factor ORG2; TrEMBL-Plants: tr|I3T1X1|I3T1X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0667200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122979038..122980616) extracted from Lotus japonicus Gifu genome v1.2.
CAAACAGCCACCTGTTTTTACATATGTATAAACGTGCATGCTGACTGCTGACATGCATAGAGGCAATTTGTGTATGTGTA CTATATATACACAAATTCATGATCATCCCTCTCACAATTTATCTAAAAGCCATTAAGTGCTTCAAACAAATTAAATTCCC ATCATCATGCTTGCATTCTCGGCCACTTCAGTGTTCTCTAACTCAAACATTGAATGGCTCTTAGCGGAGGAGCCATTTAG CTATAACCACCACCACAACTACCTTTACAATGAAAGTGTGTCCTCATTGGAGTACGCATTTCCACCACATCAACCACTAC AGCCACCACAAGCCGAGGAGGTTAAGAGGTCAATGGGGCCACCATCCATGGCCAAGAAGCTTAACCACAATGCCAGTGAA CGTAATCGACGCAACAAGATCAATACCTTGATTACTTTACTTCGTTCACTTCTTCCCGGGGTAGATCAAACGGTGCTTTC ATTAATTAACTTCTCTCTTTCTCCTTAATTAGTCAATCTTTTCTTTAAATTGCTAGTCTGATGGCTTAGATTCGAGTCTT GTCTATGAAAAGTTTAAAAACTCTGTTTATAAAATTAGCCCCACCAGACTGTGAATATCACTTTGCTCGTGCCTGTGTCG AATAAAAAACAACATTGATTAATGTCACCTAAATTTTCATCAGTATATCTCATTTGGTGTTCATGTTTGCAGAAAAAAAT GAGCATTCAGGCAACAATTTCCCAAGTCACAAGATACATACCTGAGTTAGAACAACAAGTAGAAGGACTGATTAGGAAAC AAGAGGAGCTTCGGTCAAGAATTTCTCGGCAACGCGATGATGCAATGGACATAGGATCTAAAATGACAATTCCCCATGAC AACTCTAATTTCAAAGTTTCAACGAGTTGGATCAATGATAATGAGGCTGCTATTCATATTTCCTCCTGTGAAGTTTACAT GACTCCACTATCTGAGATCTTGCTGTATTTAGAAAACAATGGCCATTTTCTGCTGAATGCCTCTTCCTCTGAAACCTTTG AAGGAAGGGTCTTCTACAACCTGCATTTCCAGGTATATATGTTTTGTAATACTTCTTTTTGTGATTATCATTTTAATGCA AGTTATAAGTCAGAGAACTAATTAAATTCCTCTGGTGTTTCTACAGGTGGAAAAAGCTCATAGAATAGAGTCCTGTATTC TAACTGAGAAGCTTTTGTCAATATATGAGAAGAAGCAAAGCATTTCTAATCAATTAGGAGGAGGGGCATGGCATTGAAGA GTAACATTTGTTATGTAAACATAAATCAACCTCGACTTAGCTGATGTGTCTCTTTCCTTTTTAATTGAAAAGAGAAGTCA GTACTGTACTATTAATTTGTCTATATAATTGTATAAGTTGGTTAGTTCAGTACGTGGTTGTTGGCCAGCACTTTTATTTT TCTCATTTGGTCTTCTCTTCAAACTCCAATAAATGTAGCTTGTAATCTCATACAAGTTTTAAATAACAAATTTTCTCATT CACTTATTATGTACCACTCTCTCATCCTTAGTCAAGTATCACAATTCATTATCATTTGC
CDS sequence (LotjaGi1g1v0667200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGCATTCTCGGCCACTTCAGTGTTCTCTAACTCAAACATTGAATGGCTCTTAGCGGAGGAGCCATTTAGCTATAA CCACCACCACAACTACCTTTACAATGAAAGTGTGTCCTCATTGGAGTACGCATTTCCACCACATCAACCACTACAGCCAC CACAAGCCGAGGAGGTTAAGAGGTCAATGGGGCCACCATCCATGGCCAAGAAGCTTAACCACAATGCCAGTGAACGTAAT CGACGCAACAAGATCAATACCTTGATTACTTTACTTCGTTCACTTCTTCCCGGGGTAGATCAAACGAAAAAAATGAGCAT TCAGGCAACAATTTCCCAAGTCACAAGATACATACCTGAGTTAGAACAACAAGTAGAAGGACTGATTAGGAAACAAGAGG AGCTTCGGTCAAGAATTTCTCGGCAACGCGATGATGCAATGGACATAGGATCTAAAATGACAATTCCCCATGACAACTCT AATTTCAAAGTTTCAACGAGTTGGATCAATGATAATGAGGCTGCTATTCATATTTCCTCCTGTGAAGTTTACATGACTCC ACTATCTGAGATCTTGCTGTATTTAGAAAACAATGGCCATTTTCTGCTGAATGCCTCTTCCTCTGAAACCTTTGAAGGAA GGGTCTTCTACAACCTGCATTTCCAGGTGGAAAAAGCTCATAGAATAGAGTCCTGTATTCTAACTGAGAAGCTTTTGTCA ATATATGAGAAGAAGCAAAGCATTTCTAATCAATTAGGAGGAGGGGCATGGCATTGA
Protein sequence (LotjaGi1g1v0667200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAFSATSVFSNSNIEWLLAEEPFSYNHHHNYLYNESVSSLEYAFPPHQPLQPPQAEEVKRSMGPPSMAKKLNHNASERN RRNKINTLITLLRSLLPGVDQTKKMSIQATISQVTRYIPELEQQVEGLIRKQEELRSRISRQRDDAMDIGSKMTIPHDNS NFKVSTSWINDNEAAIHISSCEVYMTPLSEILLYLENNGHFLLNASSSETFEGRVFYNLHFQVEKAHRIESCILTEKLLS IYEKKQSISNQLGGGAWH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 246 | 246 | 5.1E-82 | – | |
| PANTHER | 1 | 246 | 246 | 5.1E-82 | ||
| MobiDBLite | 48 | 80 | 33 | - | – | |
| Gene3D | 65 | 150 | 86 | 9.5E-17 | ||
| SUPERFAMILY | 69 | 139 | 71 | 7.33E-16 | ||
| ProSiteProfiles | 69 | 121 | 53 | 14.519 | ||
| Pfam | 70 | 121 | 52 | 3.7E-11 | ||
| CDD | 70 | 126 | 57 | 7.86317E-13 | ||
| SMART | 75 | 127 | 53 | 1.2E-9 | ||
| Coils | 118 | 145 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0667200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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