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LotjaGi1g1v0667300.1

Overview

Field Value
Gene ID LotjaGi1g1v0667300
Transcript ID LotjaGi1g1v0667300.1
Lotus japonicus genome version Gifu v1.2
Description Basic helix-loop-helix transcription factor; TAIR: AT3G56970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9M1K1|ORG2_ARATH Transcription factor ORG2; TrEMBL-Plants: tr|I3SH10|I3SH10_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0667300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:122987222..122990508) extracted from Lotus japonicus Gifu genome v1.2.

GTTTTTAAAATGACCACTCATTCTTAATTCATCTATGTGTACCAACATGGATATAAGCTGACATATGATGACTTGTATAT ATTGTATATATAATCCATGATCATCTCATTAGTTATGTAAGCAATTAACAGCTTCAAACAAATGCCCATCATGCTTGTTG AATTCCCCATCACTCCTTTCTTCTCATACTCAAACATGGATTGTCTCTTAGAAGAGGATCCCTTCATCAGCCAAAACCAG GATAATTACTTCAATAAAGACAGTGTGTCCTCACCAGAATATTCATTTCCTCAACAATTTTCTTCACCACAGCCACAGGT TGAGGTTGAAAATTCTAGTTCACTATCCCCTGACACTACCATGGTCAAGAAGCTTAGCCACAATGCTAGCGAACGTGACC GCCGCAAAAAGATCAATAGCTTGATTGCTTCACTTCGTTCACTTCTTCCAGGGCCAGATCAAACGGTACATAAAGTTCTC TCTTTCGATCTCCTTTTAGTATTTCCATAAAGCTTTGGAAAGTCAAATCGGATGAAACAAACCACTTCAAAGTTCAATTA AGGAAATTAATTGGGCAATTCTAACTCTAATGATGCACTCATGACAATGTTTTTACTTTTTACTCTTATATTTTTTACAT GTTATTTGTAGGGGTTGTCTAAATGACTCATGATTAAGTTTGAGTTAAATAACCCATCATCCAATCACATTGGAGATAAG TGAGTTGGAATTTCTACATTTTATTTGTTAATTTATTTCCAACTCATGTATCTTCAATGTAATTGAATAATGGATTATTT AACCCAAACTTTATCATGGTCATTTAGACAACCCGTTATTTGCAATATATATATCCTCATATTCTTTGTGTTAAAATTAA TTGCGGAGAAACTTTTTTAACTTGTTAACCATATATTTTTCTTGGTCCAGATAGACAAAACCATATATAATAAAACATAC ATACACATTAGCAGCGGACATACAACATGCACACACATAAACAACGGTTATTATTTTCATAGGGTCTCCTATATATGTAC AAATATTTTTTGGCGGACATAAAAGCTACACATATACTCCCTCCGTCCCTAATTATAAGTTAACATTGAGACTTTTTTTG TGTCACTAAATATAAGCTAACCTTGCAAAAGTTAATATTTCTTTCCATATTCACCCTTGCATTTATTGGTAGTGGAGCAC CACCATTAGTAGTACAATGATGAAAAAGTGTTATCATAAATAGGGGTAAACATAGAAAGTTGTACATTTTTTTTGAAAAC CAATGCATCAATTAAGGCTTTCTTAATAAGTGTGATTTTTACAACTTTAGCTTATAATTAGGGACGGAGGGAGTATGTTG TATGTCCGCATATGTGTGTATGTTGTATGTCCGCATATATGTACAAGTAACATTTTCCATTTCATAATAATTATGGACAT CATGGTACCTAAATTATGATTAGTAAAGATCTCATTCCGTGTTAATGAAGCAGAAAAAAATGAGCATTCCAGCTACAATT TCCCAAGTCATAAAATACATACCTGAGTTACAAAAGCAAGTGAAAGGACTAACTAAGAAAAAGGAGAAGCTTCTATCGAA AACTACTCGCCAAAGAGATGCAGTAAACGAAGAATCTCAAAGGAAGAAGATTCCCCATCACAACCCTGATTTCGTAGTTT CAAATAGTTGGCTCAATGATACTGAGGCTGCTATTCATATTTCCTCTTATGAGGCTCACCACAAGACTCCACTGTCTGAG ATCTTGCTGTGTCTAGAAAATAATGGGTATTTACTGCTAAATGCTTCTTCTACTAAAACCTTTGGAGGAAGGATCTTCTA TAACTTGCATTTCCAGGTATATATGTTTATACTTTTTTTACTTCTTCTTATTTATATATATATATATATATATATATATA TATAAATAACTGGTTATTTAAGTTTTGAATCTAATTAAATTGTCCTCTACTTGGTGTTTGGGCAGGTGGAAAAAACTCAG AGATTAGAGGCTGATATTCTAACTCAGAAGCTTTTGTCAATATATGAGAAGAAGCAAAGAATGTTCTAATCAAATAGGCG TTGGCTGTAATTCTTAAGATCAAATGATCTTCATCACGGCTCTGATCAAAATATGTATATATTAGTGGATTTTAGAAGTT AATGTATGTTATCTAAACATAAATGTTTAATTAAACCCCGACCTTAGTCCCCGTAGGATAACTCAAGTAGTAGGAGCTGA GGGACATATGAGTTAGGTCAAAGGATCCTGACAGGTGTAATTTATCTTTTCGATGTATAAAAAAATCTTACCTTATTGTT AACAAATAGTATTAATTGATAATGTTTGACCGTGTAAAACAGAAACAAAAGAATAATAGTGGAAGATTTAAAACTGAAAC TTATCATTTACTCAACACTACAACAGGTACTTAAAAACAAAAAAATACTTTCTTTGTTTTTAATATTATGGACTTCTCTA GGTTAACAAGCAAACATGCATAAACATTATGGACTTCTCTAGGTTAACTCTCATTCCACCTCGCAAAAGTCGTGAAAGGT CTCTGTCACAATCTGAATCTGCGCCCTAGAAGCCTGACAAAACAAGAGGACATCATCTTCAAAGAACAAGTGAGATATAC CAATTCCTTCTCGCGTGACACGAACAAGATGACATCTCCTTTCCTCGATCCACTAGCTTATAGATCTGAATAGCTAGACG CTCAATACAAAGAACAAACAGGTAGGGCGAAAGAGGGTCCCCTGCCAGAGTCCTCTCAGTGGTGCAAAAGACTCAAGTTC AGACTGATTCCACAACATAGAGATGCTAGAGGCCTTAACACCGTACCCTACATAATTAGAGCCACCATTGACGGGGGGGA CCCAAAGTCGTATAAGGTAGCATGTTCGAAATCCCAATTGACCCTATCATATATATGCCTTCTCCAAATCAATCTTGATT GCTCCCAAACCTCCCCCTTTTCTTATGATTATAAATGGTATGCATGACCTCATGAGCTAGGATTATGTTATCCCCCATTC CTCTACCCAGAATGAAGCTCCCCTGCAAGGGTCCAACCAGCTCTGAAAGCAAAGGACGAAGCCTGTTGACCAGCACTTTG GTAATCACCTTGTAAGCCACATTACACAAACTTATGGGTCTCAACTCATTGAGGTGACTAGGGTTGTCAACCTTAGGAAT GAGGACAAGTAGAATGTCTAACATATTTGGGTGATATCTCCCCTCTCTGAACGCCTTAGCCACCATTTGATGAAGGTCTT CACCCAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0667300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCCATCATGCTTGTTGAATTCCCCATCACTCCTTTCTTCTCATACTCAAACATGGATTGTCTCTTAGAAGAGGATCC CTTCATCAGCCAAAACCAGGATAATTACTTCAATAAAGACAGTGTGTCCTCACCAGAATATTCATTTCCTCAACAATTTT CTTCACCACAGCCACAGGTTGAGGTTGAAAATTCTAGTTCACTATCCCCTGACACTACCATGGTCAAGAAGCTTAGCCAC AATGCTAGCGAACGTGACCGCCGCAAAAAGATCAATAGCTTGATTGCTTCACTTCGTTCACTTCTTCCAGGGCCAGATCA AACGAAAAAAATGAGCATTCCAGCTACAATTTCCCAAGTCATAAAATACATACCTGAGTTACAAAAGCAAGTGAAAGGAC TAACTAAGAAAAAGGAGAAGCTTCTATCGAAAACTACTCGCCAAAGAGATGCAGTAAACGAAGAATCTCAAAGGAAGAAG ATTCCCCATCACAACCCTGATTTCGTAGTTTCAAATAGTTGGCTCAATGATACTGAGGCTGCTATTCATATTTCCTCTTA TGAGGCTCACCACAAGACTCCACTGTCTGAGATCTTGCTGTGTCTAGAAAATAATGGGTATTTACTGCTAAATGCTTCTT CTACTAAAACCTTTGGAGGAAGGATCTTCTATAACTTGCATTTCCAGGTGGAAAAAACTCAGAGATTAGAGGCTGATATT CTAACTCAGAAGCTTTTGTCAATATATGAGAAGAAGCAAAGAATGTTCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0667300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPIMLVEFPITPFFSYSNMDCLLEEDPFISQNQDNYFNKDSVSSPEYSFPQQFSSPQPQVEVENSSSLSPDTTMVKKLSH NASERDRRKKINSLIASLRSLLPGPDQTKKMSIPATISQVIKYIPELQKQVKGLTKKKEKLLSKTTRQRDAVNEESQRKK IPHHNPDFVVSNSWLNDTEAAIHISSYEAHHKTPLSEILLCLENNGYLLLNASSTKTFGGRIFYNLHFQVEKTQRLEADI LTQKLLSIYEKKQRMF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13935:SF91
11 254 244 9.0E-103 –
PANTHER
PTHR13935
11 254 244 9.0E-103
IPR015660
MobiDBLite
mobidb-lite
61 77 17 - –
MobiDBLite
mobidb-lite
61 87 27 - –
Gene3D
G3DSA:4.10.280.10
69 159 91 8.3E-17
IPR036638
ProSiteProfiles
PS50888
75 127 53 15.205
IPR011598
CDD
cd00083
76 132 57 7.37689E-13
IPR011598
Pfam
PF00010
76 128 53 1.6E-13
IPR011598
SUPERFAMILY
SSF47459
76 144 69 7.46E-16
IPR036638
SMART
SM00353
81 133 53 2.7E-11
IPR011598
Coils
Coil
124 144 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006357
Biological process Regulation of transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
Subterm of
Regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0667300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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