Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0668500 |
| Transcript ID | LotjaGi1g1v0668500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin-regulated family protein; TAIR: AT3G10185.1 Gibberellin-regulated family protein; Swiss-Prot: sp|P27057|GAST1_SOLLC Protein GAST1; TrEMBL-Plants: tr|I3T9J6|I3T9J6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0668500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123114413..123116694) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTGTGTGTGCAGGATGTGAATTTGTCTTTTTGGGAAGAGAAAGATTGGCTTTTTGCTAGCAGAAACAATAGCTAAG TAGTTACATAGTGCCACATTTCATCTATAAAAGACACAGAAATACTATCTGCCTATACTTATACATACCCACTCACTTGC AGACCACACTTGAGAAGAACTTGTTTCTGGTTCATTCTCTCTATTTTGAGCAATGGCGAAGAAACTATGCCTAGTTATAT TGTGTCTAGTTCAAATGTTGCTACTTCCTGTTGAAAACCATGTAAGCCAAAATGAGTTTTACAGTTCTCTTTCTCATTTT CTGAGCTTTGTTTCAGCATTCTTACTCTGTCTTAAGCTCAGCATTGCTGTTTCCACTTGTATTTTTTTTGGTTTTTTCAA CAAAATGATCATGTTTAGAAAATGGAATTGAAACTGTGCATTAGCTATAAATAATATGTAATGCCTCTTCCTCTTGTTGT TTATTATTTTGTAATTTCATTCCCTTGGCATTACACTTTCCTTTCTGATTTAAATATGGTTACCTTAAGAATAATTGTCC TTTTCATTATCCTTGATGTTGGAAAATGCTGAAAGCTAAGATATGAAACACAAAAACTGGAAGTTAACATATAGCAGTGC TGTAGTGTATACTGTCCTCTTAATTGTAAAAAAACATGATCATGCCAAACAGGATTGTAGTCATTTCTACTTAAGTTTTC TGTGTTTAATAATTACAGAAATAAAAAAAATGATTTTGTTATGATTATTGTTTTTGAGATTATACAAATATTAATTATGC TTATGCAACACACCTTAATCACTGTGCTTTCAGGCTGAGATTGTTGTGACTCCCATTGAAGCTCCATCTCCGCAGCCTGC CAACAATACAGCTCAGTTTCCCAATGTGAGTTTTTTTTTGGTACAATTTGAGAATTTCCATAGATTCTGCTTCTGGTTTC AGCAATTTTTCAATTAGTTCACTTTAAAATTTACTGCCATGCATGTATACTTTGACTTGTCAACTTCTTTTGGTTAATTT CATGCTTTTGTTCCTGAATTTCAGCATGGCATCACAGAAGGAAGTCTTCAACCGCAAGGTAATATTAAAGAACATATTAT CTGATCCAAGTAGCTACTATCACAAATTCACAACTAATTATAATGTGCACAAAAGGCTTGTCTAACCTACCCACGTGGTT AAATAACTCACCTTAAGTGGACTACTAATAGTGTAACTAATAAAAATTCAAGTAAAAAAGTCAATAATCCCACACTCATT TATCTTAAATACCATTGTTTCATCTTAAATAAAATTATTCATATTGAGGACAAGTTAGACAAAAAAAAAAACCTCAAAAG TCAAACATATAAAGATGTTAAAACTCACTTGATGACAAAATTTAGATATAGTTCGATACATGTCATTTTTACTGTTATTT TCAATTGTAATATCACATGTGAATTAAAAAATAAGAAGTTGAGGGACGTTATCACTTTAAAAAATACATGGGTTACTTAG TTTTTTATTGTACAACATCAAATCAGGCAACATTTAAGTATGCAATTTATCAGTTTTCTTCTGTAAATTCTTGGATTGAC TTAAATTTTCTTAAATTTTTCCTTTTCTTTTTTCATTTGTATTTGTTTTAGATTATTTTATTTGATGAAACTAATATTGG GTACACCTTAATTTGGTGTATGCAGAATGTGGGCCACGCTGCGCAAATAGATGCTCAAATACACAATACAAGAAACCGTG CTTGTTCTTCTGCAATAAGTGCTGTGCCAAGTGCTTGTGTGTGCCTCCTGGTCTTTATGGCAACAAGCAGGTCTGCCCTT GCTACAACAACTGGAAAACCAAAAGGGGAGGACCCAAATGTCCCTAAATTTTTTAATTATTTTAACATCTCTTAAATTAA ATGCCTTGCAACCACTGGATGATGTACAAGCACTATGTATCTAAGAGGTTGAAAGTACCTTTATTTAATTATGTTTGTCT TTGTGTACTTACATATTTTGCCTTAAGAAATGTTATTTCGGACTTGGAAAAACATACCCAAAATGGTGTTGTAGATTGGG GAGAGTGCATTGGTGTGATCATAAAGTACATTATCACTCATGAGTGGGAGTGATGTCTATACTAAAATTAAAATGTACAT TATCACTTTTTCCATTCCGAGTTATATACTATTGTTTAGTTTCTGGAATCTACCCATGTCATACTTAAGTCTTTTAACAA CTACTCAAGCGGAACTTTATAGAGATCAAAGACGACTCATGG
CDS sequence (LotjaGi1g1v0668500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGAAACTATGCCTAGTTATATTGTGTCTAGTTCAAATGTTGCTACTTCCTGTTGAAAACCATGCTGAGATTGT TGTGACTCCCATTGAAGCTCCATCTCCGCAGCCTGCCAACAATACAGCTCAGTTTCCCAATCATGGCATCACAGAAGGAA GTCTTCAACCGCAAGAATGTGGGCCACGCTGCGCAAATAGATGCTCAAATACACAATACAAGAAACCGTGCTTGTTCTTC TGCAATAAGTGCTGTGCCAAGTGCTTGTGTGTGCCTCCTGGTCTTTATGGCAACAAGCAGGTCTGCCCTTGCTACAACAA CTGGAAAACCAAAAGGGGAGGACCCAAATGTCCCTAA
Protein sequence (LotjaGi1g1v0668500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKLCLVILCLVQMLLLPVENHAEIVVTPIEAPSPQPANNTAQFPNHGITEGSLQPQECGPRCANRCSNTQYKKPCLFF CNKCCAKCLCVPPGLYGNKQVCPCYNNWKTKRGGPKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 2 | 118 | 117 | 1.7E-52 | – | |
| PANTHER | 2 | 118 | 117 | 1.7E-52 | – | |
| Phobius | 5 | 18 | 14 | - | – | |
| Phobius | 19 | 24 | 6 | - | – | |
| Phobius | 25 | 118 | 94 | - | – | |
| Pfam | 59 | 118 | 60 | 1.6E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0668500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…