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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0671600 |
| Transcript ID | LotjaGi1g1v0671600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GTPase family protein; TAIR: AT2G41670.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q8L607|SIN2_ARATH Short integuments 2, mitochondrial; TrEMBL-Plants: tr|I1JNB5|I1JNB5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0671600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123571026..123574606) extracted from Lotus japonicus Gifu genome v1.2.
CGACCAACGAAGTGATGAACAACCCTAGGTGTGGGTAGCAAGTAGCCAAGTAGCAAACATGTAACACCCTAGAAGAAGCT TTGACAGTTTAGCTAGTGAGCTTGTTAAAGCAGTCAAAAAGGAGAAAACAGAGCAATCCCACTCACACAGGCGCGAAATC GTTGAGAGAAGACAATGACAGCAGGAGGGTTAAAGAGCTTACTGAAGAAAGGCTTAGGAGATATGGCCTTCAACACCGGC GGAGGCGCCATCAACTGGTTCCCCGGCCACATGGCCGCCGCCACCCGCGCCATCCTCAGCCGTCTCAAACTCTCCGACCT CGTCATCGAAGTCCGAGACGCTCGCATCCCCCTTTCCTCCGCCAACGCCAACCTCCAACCCCACCTCTCCTCCAAACGCC GCGTCATCGCCCTCAACAAAAAAGACCTCGCAAACCCTAACATCATGCATGTAACCAACCAACTGAAAACCGTTCCTTCA CTTCAATCAATCAATCAATCAACCACTCTCTCTTGAAATTCTCACCATCGTCTTCGATTTTGCAGAAATGGACGAGCTAT TTCGATTCGTGCAAGCAAGTTTGCTTTCCGATCAATGCACATAGCAGGAGTTCTGTGATGAAGCTTCTGGAGCTTGTGGA GTTCAAGCTCAAGGAGGTGATTTCGAAGGAGCCTACACTTCTTGTTATGGTGGTTGGTGTTCCTAATGTTGGGAAATCTT GTTTGATTAATAACATTCATCAAATTGCGAAATCGCGGTTTCCCGGTAAGGGTTTTCTTGATTATTGATTGATTTGGATG AGTTAATGGTTTTGATTTTGGTGTTGAATGAAGTTCATGTGGTTTGGTTTGATTTCGTAGTGCAGGGGAAGTCGAATAAG CGAGCTACTGTGGGTCCTCTACCTGGTGTTACTCAAGATATTGCAGGATTCAAGGTTGAGTTTTGAGTTTCGGATGGTTT CGTGCTATTGAGATATATAAATTGAATTGTGGATTGTAAGTTTCATGATCAGTAAAAACAGAACATGTTTTCGCATTACA AACTTGACACACCTAACTATATGTTTGTTGTCTATAGAAGAAAAGATTAAAATGGACCAACATTAGTAGAAAGGATCAAA GGATATAGTTTTAAATTAAGGTCTTACTCTGTTCATGTGACCCGCAATGGGTCCGACACTTCTCTGGGTCCTGCTACTTT GAGGGCTTTATAGGCCCTGGTTGTTCTTTTAAGCTTATTATCTACTACTGTAAAATTTAGAACAGAAGTGTTAATGATTT AGTTTATTACTATAAGATGTTACTAAGCTTGACCATCACAGTGAAAGAAAGATGATAACTACTTGTTGAAACAGACACTA GTTGCGTTCACATCCAAATGCACTACTGCATGTTAAGCTCAAAATCTTGATAGCTGGTTGCTCAAGATTTATAAGCATAG AACTTATAGTTTAGAAGTTGTTTAAAAACAGAAAACTAGCCATTGTATTCTTAGTTTCTCATCAGGTGCAATGATTTCCC CTGTAATTTTGCAAAATTAGGATATGCTTCAGAGATTATATTCTAGCCCATCCCTAATCTTGAAATTTTGTAGTAGTTGA TTGAATATTTAAAATATGAATGGAAAATTATTTGAAAAATAGAAAAGGGAAAGGAAATGCTTTCCATCCTTCTCCTTGAT TTTGTTTTTAACATTGGCGTGCTATGTGTTTCGAACTTCCTATTATGAGTTAGTCATGCTGCCCATAATTAAAGTTAGAG TCTCTGACTTTGATATATTGTTTCAGATTGCACATAAACCCAGCATATATGTCCTAGATACCCCAGGGGTTTTGGTTCCA AGTATCTCGGACATAGAGACAGGGTTAAAGCTGGCTCTTGCAGGTACTGCATCAATTGAAATTATTTTCCTAATTAATTT TTTATTCAATCATCTCTAGCAGTCTCATTAGATCTTAGTTGTTTTTAACTTTGTCCACACATACTTCATTATGAATTCTT TATTTGCCCATAACAATTTTGGCAACTGAAGATCTCATATTATCATGATCTCCTTGTGTATGGGGCGTGAAATTAACTTG AAAGGGGCATCTGCATCTGTTGAATTTCTTAATCCAACATCATTTGCAACACATGTCCTGGTATATTGCGACATGTAAAC TTGTTTCTTGCATTGACAGGGTCTGTGAAAGATTCAGTGGTGGGTGAGGAGCGTATTGCTCAATACTTACTGGCAGTTCT GAATACTCGGGGAACTCCACTGCACTGGAAGCACCTAAATAACAGGAGAATGGATGGGATTGAATATGAAGTTGAGGAAA ATCATGAATATAGTCTGAAAAATCTAAAGCGAAAGAGAAAAAACCTTCCTAATAGATCCGACTTGGTATATGTGGAGGTA AAAAGTTGAATTTTTTTATGTAGTTTAAATTATATGCATAATGGAATATGATCTTTAAACCACCAATGCTGGAAATTTTC ACACTTTGGTTTACAATGTCCAAATTATATTATACTTCCCAGTATTTCAATGTTTTATTTGGTTTATTTTTTTTCCTGTA ATTTTTTACTTTATTTTATTCTTATTTCACCATAGGATATTGTAACGGAAGTTCAGCGTGCACTCTATTCGACTCTAACA GAATTCGATGGCAATGTAGAAGATGAGAACGACTTAGAGTGCCTTATTGACCAGCAGTTTGGTGCCCTGCAGAAGGCACT AAAGATAAACCAGAAGGCTTCAGAAGCACGGTTAATGGTATCAAAGAAGTTTCTTACTCTATTCAGGAATGGTAAACTAG GACCTTTCATTCTTGATGATGTCCCTGATGTCATTCCTGTATCATGAAGATATATTATTGCTTCCCTTTCCCCCCTCTCT TCTAGTGTATTAGATTTCCTACCTTCCCACTTCTATCATTTGTAACCCATATATATATCATTCCAAATTTTGCTGTAGCT TGCAAATAGCGTAGGCAAATAGCGATGAATTTAGTAAGATATTGAATTTCTTTCATGTGGACCTGTGAAATTTGCCAGCA TTCCTGTTCCAGTAGTCTCGGGAGACGGGAAGATTAACAACTAACACAGCCCAGAAGTTTTGAAACCTGAGTTCATGATC ATGGAGTCCAAAGCATGTATATTGGAATGTTGCACAATGGAAATTCATCCCAGCAGTTATATACTACATGAACCATTCTA TGCATGAAACACGATTTGTTTTCTTAATTCTAATCCTGTTTGATTATTTTTAATTTAAATATACCTCTGCAAAAATAAAA TAAAACCTGAAGGCCAAAAGTGGAGTGTGCTGCAGGAGATTTGGCATTGACACAAAACTAGTTGAAATTTTAGAACTTTG AAGAATGTTGCAAGCAAAAGGTTTTTTTAAACCACATGTACCATACACTATCATCCACAATCACAATCATCCAGTAAGAT CATTATGAGCATTAAAAAGCATGAGCATTAAAAAGCAAAAGGGCTAATATATGGCACACCTGTCTTAATAGATGTTAATC GCCTGTCATACAAGTGCCTCCAATTTTACATCAACATTACTAATAAAACAAACCCACTCCT
CDS sequence (LotjaGi1g1v0671600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGCAGGAGGGTTAAAGAGCTTACTGAAGAAAGGCTTAGGAGATATGGCCTTCAACACCGGCGGAGGCGCCATCAA CTGGTTCCCCGGCCACATGGCCGCCGCCACCCGCGCCATCCTCAGCCGTCTCAAACTCTCCGACCTCGTCATCGAAGTCC GAGACGCTCGCATCCCCCTTTCCTCCGCCAACGCCAACCTCCAACCCCACCTCTCCTCCAAACGCCGCGTCATCGCCCTC AACAAAAAAGACCTCGCAAACCCTAACATCATGCATAAATGGACGAGCTATTTCGATTCGTGCAAGCAAGTTTGCTTTCC GATCAATGCACATAGCAGGAGTTCTGTGATGAAGCTTCTGGAGCTTGTGGAGTTCAAGCTCAAGGAGGTGATTTCGAAGG AGCCTACACTTCTTGTTATGGTGGTTGGTGTTCCTAATGTTGGGAAATCTTGTTTGATTAATAACATTCATCAAATTGCG AAATCGCGGTTTCCCGTGCAGGGGAAGTCGAATAAGCGAGCTACTGTGGGTCCTCTACCTGGTGTTACTCAAGATATTGC AGGATTCAAGATTGCACATAAACCCAGCATATATGTCCTAGATACCCCAGGGGTTTTGGTTCCAAGTATCTCGGACATAG AGACAGGGTTAAAGCTGGCTCTTGCAGGGTCTGTGAAAGATTCAGTGGTGGGTGAGGAGCGTATTGCTCAATACTTACTG GCAGTTCTGAATACTCGGGGAACTCCACTGCACTGGAAGCACCTAAATAACAGGAGAATGGATGGGATTGAATATGAAGT TGAGGAAAATCATGAATATAGTCTGAAAAATCTAAAGCGAAAGAGAAAAAACCTTCCTAATAGATCCGACTTGGTATATG TGGAGGATATTGTAACGGAAGTTCAGCGTGCACTCTATTCGACTCTAACAGAATTCGATGGCAATGTAGAAGATGAGAAC GACTTAGAGTGCCTTATTGACCAGCAGTTTGGTGCCCTGCAGAAGGCACTAAAGATAAACCAGAAGGCTTCAGAAGCACG GTTAATGGTATCAAAGAAGTTTCTTACTCTATTCAGGAATGGTAAACTAGGACCTTTCATTCTTGATGATGTCCCTGATG TCATTCCTGTATCATGA
Protein sequence (LotjaGi1g1v0671600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAGGLKSLLKKGLGDMAFNTGGGAINWFPGHMAAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRRVIAL NKKDLANPNIMHKWTSYFDSCKQVCFPINAHSRSSVMKLLELVEFKLKEVISKEPTLLVMVVGVPNVGKSCLINNIHQIA KSRFPVQGKSNKRATVGPLPGVTQDIAGFKIAHKPSIYVLDTPGVLVPSISDIETGLKLALAGSVKDSVVGEERIAQYLL AVLNTRGTPLHWKHLNNRRMDGIEYEVEENHEYSLKNLKRKRKNLPNRSDLVYVEDIVTEVQRALYSTLTEFDGNVEDEN DLECLIDQQFGALQKALKINQKASEARLMVSKKFLTLFRNGKLGPFILDDVPDVIPVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 374 | 364 | 3.0E-188 | – | |
| PANTHER | 11 | 374 | 364 | 3.0E-188 | – | |
| Gene3D | 26 | 206 | 181 | 7.3E-37 | – | |
| CDD | 28 | 206 | 179 | 7.98504E-65 | – | |
| SUPERFAMILY | 32 | 220 | 189 | 5.18E-31 | ||
| Pfam | 139 | 257 | 119 | 8.3E-14 | ||
| Gene3D | 211 | 362 | 152 | 1.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0671600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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