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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0673500 |
| Transcript ID | LotjaGi1g1v0673500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | senescence regulator (Protein of unknown function, DUF584); TAIR: AT3G15040.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|B7K970|RUVA_CYAP7 Holliday junction ATP-dependent DNA helicase RuvA; TrEMBL-Plants: tr|V7CZT2|V7CZT2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0673500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123928508..123930268) extracted from Lotus japonicus Gifu genome v1.2.
GAGAATAATTCAGGGGTGTTTTGGCCATTACATGATTTTTGTGTTTTAAATCTGGATCGTTGAATATTTTAGTGTTATAT CTAATGGTTCTAATTAAAATGATCCACGGCACCTATCTGCGTCCCTCTGCCACATCACTGTTTGTTGATCATTAGATTTG GCACCCCAACCATTAGAAATGTCACCCCACTTACGGAAACTCAGTTTCCGAAATATTTCGGAAATAAGGTTTCCGAAGCA CTTTTTTACTCAAAAGTGTCGTTTTTTACTCAAAAGTGTGGTGTTAGATGTATTTTGAACTAAAAATCACGAATTAATTT CGGAATCTAAGATTCCGAAATAATTCGGAACTTGAAAATCCGAAAATTAGGGGTGTGAAATCTAATGGTTGGGGTGGCAA ATCCAGCTCTCCTGTTTGTTAGATTTCACAATCTTTCATTTCATTTTCAACTTCACTCGCTCTTCTCCTCTTTCACCTTC ACCTACCACACAACACCAAATGGACCCCACACCATCCTTCCATCGCCGGCCATCTTCCACCGCCGACCGCCTCCTCGGTG CCTTCACCTTCTTCCCCTCATCCGCCACCACCTCCGCTGCCGATGAGCTCAACGAAGCCGAGCTTTTCTGGTCCGAATCG GGAAACCAAAGCCCGCCGGCAGAGGCAAATCGCCGCCGGAACTTCGATCGTGCACTGGACTCCGGCATCCTCGCCGCGCT GACGGAGCCGGGTCTTCGTGGTAAGTTATCTTCTTCGAGGATGATTCCTTCGTTGCGGAGACCTCCACCAGCTGCTCCGG TCAGCTCTGAGCATCTGGCCCAGTCCGCGCCTTCTAGAAAGTTCCAGCAATCGGCTCCTATGAAGGTCCCGATTCTTCTC TCGAAGGGCGTGCCGGCACGGAGGAACGTCGACGAGCTCGAGGACGACGACATCGGAGGCGACGGGGAGATGTTGCCGCC GCACGAAATCGTGGCGAGGGGCTCCGGAGTTTCGCCGAAGACCACCTTTTCGGTGTTGGAAGGAGTTGGAAGAACACTGA AAGGGAGGGATCTCCGTCAGGTGAGAAACGCCGTTTTGCGCAGAACCGGTTTTCTCGATTAATTAACAATTACTGGCATA TGTATATGGTGTTTTATTCTCTATTTATATATGTATTGAGTTGGGGATGTCCAATTTTGATTCCTTCTTTGTACCATCCA TGACCATGATAGCTTAGATGAAAGATGTTTTAGCTTTTCCATGTAAGATTAAGATTATCTGTTCCATTTCGGTTACTCAT GTGAGAGTTGTGTTGTTGAATGATATATAAGTACCTCTGTATGACAACATAGTCCCGGAGGAGGCATACCCGGGTGTGAC CGAAGCGGAATTCGCCCAAATTTTTATGAAGAGAAAAAAGACCTTCTCTTTGGAAATTAATGATATAAGTTTTGGGCAAG ACAAAATGATATAAGATGTTCTTTGTTGAATATTTTCATCTTTTTGTTAAGTAGGCAAGATTTTTGGGATGAAAATTGTA ATTTGTGAACATCCAGTTTAACTTTATGGAATAATTGATTTTGTGATATAATATCAGAGTCCATGACTAAGTTGTCTAGA ATTCAAACTTTATTATGCCCAATTCTTTGGTTCTTTGACAATCCTTAAATGATTCCTGCGTTTAATTTTATTTCAATTGC ACTGTTTGTTTGAAGTTATTGTAAATATTGGTCCTAGTTGCTTGAGAGCAATAATTATGCTTTGAAATGGCTGAAGAGTA G
CDS sequence (LotjaGi1g1v0673500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCCACACCATCCTTCCATCGCCGGCCATCTTCCACCGCCGACCGCCTCCTCGGTGCCTTCACCTTCTTCCCCTC ATCCGCCACCACCTCCGCTGCCGATGAGCTCAACGAAGCCGAGCTTTTCTGGTCCGAATCGGGAAACCAAAGCCCGCCGG CAGAGGCAAATCGCCGCCGGAACTTCGATCGTGCACTGGACTCCGGCATCCTCGCCGCGCTGACGGAGCCGGGTCTTCGT GGTAAGTTATCTTCTTCGAGGATGATTCCTTCGTTGCGGAGACCTCCACCAGCTGCTCCGGTCAGCTCTGAGCATCTGGC CCAGTCCGCGCCTTCTAGAAAGTTCCAGCAATCGGCTCCTATGAAGGTCCCGATTCTTCTCTCGAAGGGCGTGCCGGCAC GGAGGAACGTCGACGAGCTCGAGGACGACGACATCGGAGGCGACGGGGAGATGTTGCCGCCGCACGAAATCGTGGCGAGG GGCTCCGGAGTTTCGCCGAAGACCACCTTTTCGGTGTTGGAAGGAGTTGGAAGAACACTGAAAGGGAGGGATCTCCGTCA GGTGAGAAACGCCGTTTTGCGCAGAACCGGTTTTCTCGATTAA
Protein sequence (LotjaGi1g1v0673500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPTPSFHRRPSSTADRLLGAFTFFPSSATTSAADELNEAELFWSESGNQSPPAEANRRRNFDRALDSGILAALTEPGLR GKLSSSRMIPSLRRPPPAAPVSSEHLAQSAPSRKFQQSAPMKVPILLSKGVPARRNVDELEDDDIGGDGEMLPPHEIVAR GSGVSPKTTFSVLEGVGRTLKGRDLRQVRNAVLRRTGFLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 33 | 8 | - | – | |
| Phobius | 34 | 200 | 167 | - | – | |
| Pfam | 36 | 200 | 165 | 2.9E-39 | ||
| MobiDBLite | 82 | 118 | 37 | - | – | |
| PANTHER | 83 | 200 | 118 | 1.6E-56 | – | |
| PANTHER | 83 | 200 | 118 | 1.6E-56 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0673500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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