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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0677000 |
| Transcript ID | LotjaGi1g1v0677000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger A20 and AN1 domain stress-associated protein; TAIR: AT2G36320.1 A20/AN1-like zinc finger family protein; Swiss-Prot: sp|Q9SJM6|SAP4_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 4; TrEMBL-Plants: tr|I1JQ03|I1JQ03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0677000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124377340..124378897) extracted from Lotus japonicus Gifu genome v1.2.
CCACTGTCCAACTTGCTGCCACGCCTTCTGTGCCCAAACCAAACACGGAGCTCCCACTTTCCCTCTTCCCTTTCTCTCTA ATTATTCTCCTTATTTTGATTTTTTATCAACCAACAACATTCAGAGAAAAATAAAATCAGAATTTTCTTGTCTATTTTCG TTTCATTGGATGTCAATTAACAATTATTAATAATGAATGGTTTTCTCCACTAATCTTATAATTAATTGTTAATTAATATC TCCGTGACGATGACAAGTTGAAAATGATGAATACTGATTTATCATTCCCCGTTTCCCTTTCTTATCTCTCTTCCATTCCA ATCTCCACAACCAACCACTCCTTCTCTTCAATCAGGTACAACAGTTTTTCTTCCCAATTACCTTTCAAATTTTCCTCTCT TGAATCTGCAATCCTGTAATAATTTTCTATTCTTCTGAATTGATTCCATCGCTGCTTTTCAATTATTCCTTCAGATTTTC TACGAATCCAAACAAACGCACGCTTCAAATATTCTTCATCAGATCTTCTATGGCGGAAGAACACGGATGCAAAGCACCGA AAGGCCACATACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGTCCAGCCACCATGAATCTTTGCTCCAAATGCTACAGG GACGTCCATCTGAACGACCAAGACCAAGCCAAGACCAAATCCACCATCCAAACCGCTCTCTCCACCGTCGCAGCCTCCGC CGCCGCTTCCATGCCACCTGCCGTTGAATCCGTTCCTCAACCGCCAGCGCTCACTTCGCCGGAGATCGCGTCGCCGGCGG CTCAGGTAACGAACCGGTGCGGGACGTGCCGTAAACGCGTCGGTTTGACGGGGTTCAGGTGCAGATGCGAAGCCACGTTT TGCGGGGCCCACAGGTACCCGGAGAAGCACGGTTGCGGGTTCGATTTCAAGGCGGTGGGGAGAGAGGAGATTGCACGGGC GAATCCTGTGGTCAGAGCTGATAAGCTGAGAAGGATTTAATCTGCGCCGTTGGATGAATCAAGTGGTTTCGATAGGGACC GTTCAATACGAATCAAGCGGCGATGCTTGATGAGATGTATAAAATATTAAAATCTGTATTTCTATTATGATGAGATTAGG AAAGGTTGAATAAGTAATGTTTTACTTGGCTTTGCATTGTATGTATGCATTATTAAGAAGAATCAAGAAAAAAAAATTAA GAAAATTAAAAGGGAGTTTCCATTGCTTTCGAAGAATCTTTTGTTCACAACTCATTTCTTAGGTATAAAGAGGTGGAGGA AGAGAGATAGGAAAAAAGAGAGAAAATGTTAAAATGTGATAGATAATTTGATTGATAGAAAAGAGAAAAATTAGATAGAA AATGAAGGAAAAAAGTGAGTGAAAATGTATATGAATCATAACTCATTGCGTTACGATTCAAGAGATTGGGGTGTGATTCC ACTTCTATGTTTAGACCTCAAACTCGTGGTTAATTAACAATATACGAGCACACGCCATGCCTCATTGTTGACAAGCTTCA ATTTTATGATTACGATGTTATTTATATTCAAATTGTTG
CDS sequence (LotjaGi1g1v0677000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAACACGGATGCAAAGCACCGAAAGGCCACATACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGTCCAGC CACCATGAATCTTTGCTCCAAATGCTACAGGGACGTCCATCTGAACGACCAAGACCAAGCCAAGACCAAATCCACCATCC AAACCGCTCTCTCCACCGTCGCAGCCTCCGCCGCCGCTTCCATGCCACCTGCCGTTGAATCCGTTCCTCAACCGCCAGCG CTCACTTCGCCGGAGATCGCGTCGCCGGCGGCTCAGGTAACGAACCGGTGCGGGACGTGCCGTAAACGCGTCGGTTTGAC GGGGTTCAGGTGCAGATGCGAAGCCACGTTTTGCGGGGCCCACAGGTACCCGGAGAAGCACGGTTGCGGGTTCGATTTCA AGGCGGTGGGGAGAGAGGAGATTGCACGGGCGAATCCTGTGGTCAGAGCTGATAAGCTGAGAAGGATTTAA
Protein sequence (LotjaGi1g1v0677000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEHGCKAPKGHILCANNCGFFGSPATMNLCSKCYRDVHLNDQDQAKTKSTIQTALSTVAASAAASMPPAVESVPQPPA LTSPEIASPAAQVTNRCGTCRKRVGLTGFRCRCEATFCGAHRYPEKHGCGFDFKAVGREEIARANPVVRADKLRRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 156 | 156 | 7.0E-61 | – | |
| PANTHER | 1 | 156 | 156 | 7.0E-61 | – | |
| ProSiteProfiles | 10 | 44 | 35 | 9.96 | ||
| SMART | 13 | 37 | 25 | 2.9E-9 | ||
| Pfam | 14 | 37 | 24 | 4.9E-14 | ||
| SUPERFAMILY | 15 | 58 | 44 | 1.14E-13 | – | |
| Gene3D | 74 | 152 | 79 | 1.3E-27 | ||
| SUPERFAMILY | 89 | 151 | 63 | 5.1E-28 | ||
| ProSiteProfiles | 94 | 137 | 44 | 12.656 | ||
| Pfam | 97 | 133 | 37 | 7.6E-10 | ||
| SMART | 97 | 134 | 38 | 3.0E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0677000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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