Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0677100 |
| Transcript ID | LotjaGi1g1v0677100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Solute carrier family 35 protein; TAIR: AT3G59310.1 solute carrier family 35 protein (DUF914); Swiss-Prot: sp|Q5T1Q4|S35F1_HUMAN Solute carrier family 35 member F1; TrEMBL-Plants: tr|G7L611|G7L611_MEDTR UAA transporter family protein; Found in the gene: LotjaGi1g1v0677100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124384519..124387976) extracted from Lotus japonicus Gifu genome v1.2.
CGCCAATGTTAGTTCATGCTCCATTCTTATTCTTCATAATTAAGATTTTGAAAATAAAAAAAATCAGAAAGAAAAAAACA AAGAAAAGAGTGAAGCATTAGTTTCAACAATGGATTGGCTTGCCATAAGAAGGTGCTGGAGAAGCCCTGCAAATTTAAGA GTTATTGGCTTACTCTTGCTGGGTCAACTAGTTTCCTTCTCTCTTGCTCTCACTAGCCTCACTTCTTCTCTCATAGCCGG ATTTGGTATTCTTAGTTTACTTGTTTTTGTTTTTCTTAAGAGACTTTGACATGATTTTGTCAATTGTCATGTTCCATTGA ATAATGAAAATATATGAATATATAGGTGTTGATGCACCTTTAACTCAGAGCCTGTTTACCTATGCATCTTTAGCTTTGGT TTATGGAAGCATACTTCTCTATAGGCACCACAAACCTCTGGTACCATTATATACACATCTTTATTTCAAAATTGCTTGGT AATTGGTAAATGTATATTTTCTCCCTTTAAAATTTCTGCAAGAGAATTTTAAATTTGAGGATTTTAGGATCTTGCATTGT GTTTATGTTTGCTGTGCAGGTTTCTTGGTATTGGTATCTACTATTAGGCTTTGCTGATGTTCAGGGGAATTATTTGGGTA AATGGTGCTGATCCATCTCTCAGTCATTTCATTTCATACATTTGGGTTTGAGTCACTGTGAATTGTGAATGCTAATTCAT CTCTTAATTATAGAAATACTAATATATACTAGCTTAATTTGTGTGCAGTTAACAAAGCATTTCAGTATTCATCCATTACT AGTGTGACATTACTGGACTGTTGGACAATACCATGGGCAATTTTATTCACATGGTTCTTCCTAGGCACAAGATATTCACT ATGGCAGTTAGGTGGTGGAGCCCTCTGTGTGCTGGGTCTCTGTTTGGTGATACTTTCTGACACTTGGGTTGGTGGTGGAG GTGACTTTTATGATATAAATTCAAGCTCTTTGGAATTATTTGATTTCTGGATGATAATATTGATCATACTGAGTTTTAGG ATAACAGTTTTTTAGTCCAAATCAAAATTTTCAGGTGGCTCAATACCTATATTGGGTGATGTGCTTGTGATTGGAGGGAC AGTTTTCTATGCAATAAGCAATGTTGGTGAGGTATGTCAATTGTAGAATTCCATTTTAATAATAACATAATCATATAAAC CATGAAAGCTCTAAGTTGCAGAACAAAGAGTAGCATTATGATGGCCAAATTTGAAGATTTCAATTTCGATCAATTACTTA GTTGCCTTACTACAAAATGCAGGAATTTTGTGTTAAGAACAAAGATCGCATTGAAGTTGTTTCCATGATTGGTGTTTATG GAATGTTGGTGACAATTGTTGAAGTGTATCCTTCTTGTTAGATCATTTAGGGATGTACATTTGTACATGGATTTTGTTAC TTGCCTTTGAATTGAAGTTTACACCTTCCAGATATTATTAGAAAGTTTCCTTTATTCCATGATCTTACAGATCTTTCATA GAATTGAGGACTCTGGAATCTGTCAAATGGTCTGCAGACATTGTAAGTAATCAGTGCACAATCCTTCCAAGATTTTATCT TCTAACCTTCTCTTATAAATCCAATATTCTCCAAAGAAAGCAAATTAAGTAGCTGTCAATTTCTATTTTGTAAAGAGAAA CAAATGAAGACACAGCTGTGCAAGTCTCCAACTTGATACTAAATTATGGAATTTCACAATAATAAAAGAACCTGATTTAT GTGTGCCTGCTTCCGTTGAGTTCCAATTTAGAGTTAATATATTTGTTTAGTACAAGATTAAGGATTCCAAAGGGCTTAAT ATTGTCTCTTACCCTGAATTTTTTGAGGGAAGCTCTTACTTGTCCTTTCTAACTTTGAGGGTTATGCTGTCATTTTCATG TTAATCACTAAAATAAGTTTTCCTTTTGTTATTTTTGGTCTTTGACTCAGATGTCCCTACCCGTTCGGGAAATTGTAGTT GTCTCACCTAACAAATGACATTTTTGGAATTCGAACTTGTATTCTCGCTCTTACTAAGTCTAGTTTGCTTACCACTAGAC TAACACCTTCTTGGCAAAAAATTTCCTTTCTTGAAACAAGTCTCTGGAATTTATCCTCTAATTTCTGATTGTCAACAATA TAGTTACGAAACTATGTTTGCATGGTTGAATGTTTAAATTCCTTCTTAGGTACTTGCTTTTGCTGGTTATGCATTGTCAA CCTTCACGTTTTATACACTTACTCCTTTTGTTTTAAAGGTTAGTTTCCTTCTCATTGACTTATTTGGCACAACTCTCTTT GTATGAGGGGGATTATTTCAATGCAGCAGTGATGTTCTTTGCCATTTGTTTCTCAGATAATTAACTTAGAGATGTGTGAT AAAATCATTCAAGTTAATTCACAAAGTATGGCCCCTGGACCAATCATCCAAGAACAGTTTATGTGACTAGTGGCCCCTGG ACCAATGATCCATTTATTAGAGTAATTACTAATTAGACATGACAAAAAACACATGAAGCAGAAAAAATCATACCTTGAGA TGAGATTGGTTCTGAAGTTCTAAGAGGAACTTGCAGCCTGCGACATTTAGGATGAAAGTGGGGAAATCAATTGCTTAAAT AGACTAATGAATTTTTAGTGGAATTTTGTCCCCTGCAGTTGAGCGGAGCAACAATGTTTAATCTTTCTCTTCTAACGTCT GATTTGTGGGCAGTGGTTTTCAAAATCTTCTTATATCACCATAAGGTATTGTTTTCCATATTGACAAATTAAGCACTTGG TTTTGGTCAATATATTCATTAGTCAGTTTGCAACTTGCAATTGACATAGCTATGGTTGTTGAACTATTTAAATTTTATGC AATTGTTATTCAATAATCAATACAATGTAACAGAGTGTTATTGTCTAATTTCAGGTGGATTGGTTGTACTTCTTATCTTT TGCACTTGTTGTTATTGGCCTCATCATTTATTCTACAACGTATGTATTAAAATTTGGTTACTCTGAAGTCTGAATAGACC TGTTAATGAGTTTATATGCTTTTCTACATATTGATTTATGCAATTAAAAGTTTTGCACTAATTATTCTTAAAAAACCATG AAACTAATTATTTGATGTTCATTTTTTTTATCAGAGAGAAGGATTCTACACCTGCATTATCAGCAACAGAGGATGGGAAT GTGGACACAGAATACCAAATACTTGATGACGAAATTAGCACAACATCTGCAACTGGTTCATGAGGGAAAGTCACATTTTA CAATTGGAAGTGGAAAATACAACTCGTATGATTTGTAATCTATAGTTTAGGCTGAATTTCATAATGTGCTTCTTGAGGCA CAACTCATCTACAAAAAAAATGAGTAAAACTAAAACATACAGTATAACAAACAATCACAAATATAAAATTAAAGATTTTT AATGTGGTTTGATCACAA
CDS sequence (LotjaGi1g1v0677100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGGCTTGCCATAAGAAGGTGCTGGAGAAGCCCTGCAAATTTAAGAGTTATTGGCTTACTCTTGCTGGGTCAACT AGTTTCCTTCTCTCTTGCTCTCACTAGCCTCACTTCTTCTCTCATAGCCGGATTTGGTGTTGATGCACCTTTAACTCAGA GCCTGTTTACCTATGCATCTTTAGCTTTGGTTTATGGAAGCATACTTCTCTATAGGCACCACAAACCTCTGGTTTCTTGG TATTGGTATCTACTATTAGGCTTTGCTGATGTTCAGGGGAATTATTTGGTTAACAAAGCATTTCAGTATTCATCCATTAC TAGTGTGACATTACTGGACTGTTGGACAATACCATGGGCAATTTTATTCACATGGTTCTTCCTAGGCACAAGATATTCAC TATGGCAGTTAGGTGGTGGAGCCCTCTGTGTGCTGGGTCTCTGTTTGGTGATACTTTCTGACACTTGGGTTGGTGGTGGA GGTGGCTCAATACCTATATTGGGTGATGTGCTTGTGATTGGAGGGACAGTTTTCTATGCAATAAGCAATGTTGGTGAGGA ATTTTGTGTTAAGAACAAAGATCGCATTGAAGTTGTTTCCATGATTGGTGTTTATGGAATGTTGGTGACAATTGTTGAAG TATCTTTCATAGAATTGAGGACTCTGGAATCTGTCAAATGGTCTGCAGACATTGTACTTGCTTTTGCTGGTTATGCATTG TCAACCTTCACGTTTTATACACTTACTCCTTTTGTTTTAAAGTTGAGCGGAGCAACAATGTTTAATCTTTCTCTTCTAAC GTCTGATTTGTGGGCAGTGGTTTTCAAAATCTTCTTATATCACCATAAGGTGGATTGGTTGTACTTCTTATCTTTTGCAC TTGTTGTTATTGGCCTCATCATTTATTCTACAACAGAGAAGGATTCTACACCTGCATTATCAGCAACAGAGGATGGGAAT GTGGACACAGAATACCAAATACTTGATGACGAAATTAGCACAACATCTGCAACTGGTTCATGA
Protein sequence (LotjaGi1g1v0677100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWLAIRRCWRSPANLRVIGLLLLGQLVSFSLALTSLTSSLIAGFGVDAPLTQSLFTYASLALVYGSILLYRHHKPLVSW YWYLLLGFADVQGNYLVNKAFQYSSITSVTLLDCWTIPWAILFTWFFLGTRYSLWQLGGGALCVLGLCLVILSDTWVGGG GGSIPILGDVLVIGGTVFYAISNVGEEFCVKNKDRIEVVSMIGVYGMLVTIVEVSFIELRTLESVKWSADIVLAFAGYAL STFTFYTLTPFVLKLSGATMFNLSLLTSDLWAVVFKIFLYHHKVDWLYFLSFALVVIGLIIYSTTEKDSTPALSATEDGN VDTEYQILDDEISTTSATGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 12 | 336 | 325 | 8.0E-160 | – | |
| PANTHER | 12 | 336 | 325 | 8.0E-160 | – | |
| Pfam | 19 | 303 | 285 | 3.4E-92 | ||
| Phobius | 20 | 43 | 24 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 44 | 54 | 11 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 55 | 74 | 20 | - | – | |
| SUPERFAMILY | 56 | 154 | 99 | 1.02E-11 | – | |
| Phobius | 75 | 79 | 5 | - | – | |
| Phobius | 80 | 97 | 18 | - | – | |
| Phobius | 98 | 108 | 11 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 109 | 128 | 20 | - | – | |
| Phobius | 129 | 133 | 5 | - | – | |
| TMHMM | 133 | 152 | 20 | - | – | |
| Phobius | 134 | 152 | 19 | - | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 164 | 182 | 19 | - | – | |
| Phobius | 183 | 201 | 19 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 202 | 219 | 18 | - | – | |
| Phobius | 220 | 230 | 11 | - | – | |
| SUPERFAMILY | 227 | 305 | 79 | 4.05E-5 | – | |
| TMHMM | 231 | 253 | 23 | - | – | |
| Phobius | 231 | 253 | 23 | - | – | |
| Phobius | 254 | 258 | 5 | - | – | |
| TMHMM | 257 | 279 | 23 | - | – | |
| Phobius | 259 | 279 | 21 | - | – | |
| Phobius | 280 | 285 | 6 | - | – | |
| Phobius | 286 | 304 | 19 | - | – | |
| TMHMM | 286 | 305 | 20 | - | – | |
| Phobius | 305 | 340 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0677100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…