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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0677200 |
| Transcript ID | LotjaGi1g1v0677200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pyrimidine-specific ribonucleoside hydrolase; TAIR: AT2G36310.1 uridine-ribohydrolase 1; Swiss-Prot: sp|Q9SJM7|URH1_ARATH Uridine nucleosidase 1; TrEMBL-Plants: tr|A0A151TVS2|A0A151TVS2_CAJCA Uncharacterized protein C1683.06c family; Found in the gene: LotjaGi1g1v0677200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124390329..124396192) extracted from Lotus japonicus Gifu genome v1.2.
CTCCACGTTCTTCTTTCCTATCTGACCCGTAAAGCCAGAAAGGATATTCAGAAAAAAGGAAGAGGATACGCCACGTGTCC CATACTGATTGGTCATCATCACATAGACGAGAGAGACGGTCCGTTATTTTATTATCCACCCAACCCAAAGCTCTCTCTCT GCATCATCGTCGTCTTCAACAAACAAAAGCCTCTTCCCTTTTTCTCTGCATATTCCTTTCCCACTTTTCTCCACCCTCGT GTGTATGTGTGTATATTCCGCTTCCAAATACACACATACACACACGTATATATAAACACACTCACATCTTCCACGTTTCC ATTCCAAGCGCTCTCATTCTTCTTCGTAACTCGCTCAATCCCTAGCTTCCCGATTCGCTCTCATTCCACCGCCGATCATG GCTGCTCCAGTCAACAACTCTCACGGTGGCGTCAACGGTGTCATTGCAGAAGCTCACAAGCTCATTATCGATACCGACCC TGGGATCGGTTAGTTTCGTTTTTTTCCCTTTCCGTTTTTAGCAAAAATCACTCAACTGTTTCCTTCATTATCACATCAAA TATGGAAACTCGCATAAACATGCTGCCAATGAATCAGAATTGTCAGATTTGACTTGTAGAATTCTGATTTTGCAGTAATT TAGATTAGAGATAAGGTGATTTGTTAGCAATATAGTATAAAACTATCTACATCAAACAATTTTGAAATAGTTAGTTCATG ACTTGATTTCATAGTCTCTGACCAAGTGATTGTGATTGTATACTGTGATTGAACATTGTTATTAGAATTTTCTTACACTG ATATCTTGTTGTGCGTGTCCATGAGATTCGAAGATAGTTTTAGCATGTGTTTGGATTTCCGTTGAATTCAGCGTGTTCTT GTTTCTCTTATCCACGTTTAGTTCAATGCGGCAAATGCTAGCTTCGTGTTGACCTTGAGATACATGAAATCACGTTTGTG TTTGGATTAATGCCAAAACAAACATACACTTACTTGATCTGTATGTTTTTGGAAGACTGAAGAGTTATAAGAAGTGTTTT CGTGTGAATGGTGATTTCGTTGGTAAAATTGGAATGGTGTTTTTGTGATTTTGCAGATGATAGTATGGCAATTATGATGG CATTTCAAACTCCAGAGGTGGATGTCCTGGGTTTGACTTCCGTTTTTGGTAATGCTGCTACGGAAGATGCCACGCGCAAT GCTTTGCTTTTGGTATGTGTTTGTTTTCATCATCACCATCACTTTGGCCGGTGAATTTCTTTTCTGGAAAATTCTTATCT GTTTCATGTGTTTGGAATGTGTTCTTGATTGTGATTTTAATATGCAAAAAGGATAGTGTGAGATCGCAGGCCGTGAAGAT GTTCCAGTTGCAGAGGGAAGCCATGAGCCGTTAAAGGTAGGTGACTAATTTTCTTATGAGTTTTGTTTTAAGATGTGTGC CTTCAAGTACACGCCTCTGCACAGTGCATTACATGTTTTTCCCCTGCTTCAACCCCTCTGTTTCCCCCCTTTTGATTTTC CTATGTCTTTCTGGTATTAATATACTGTATTTTCTGCATAAAAGGGTGGAAGGCCACGTGTTGCTGATTTCGTTCATGGT AAAGATGGATTGGGGAACTTATTCCTACCTGATCCGAAAACTAAGAAAATTGAAAAAAGTGCAAGTGAGTTTTTAGTAGA CAAGGTCTCTGAATTTCCTGGTGAAGTGACTGTACTAGCACTTGGACCCCTTACAAACGTAGCTTTAGTAAGTTGTACTC TCTGTCTTGTACTTTATTTATGGTCCTGACCTTAATAACAGTTGCATCCATTAGTTGATCTTATAGTCTGACTTTCATTA TTAGGCAGTCAAAAGAGATTCTTCTTTTGCAAGCAAGGTAAAGAGAATAGTTGTACTCGGCGGATCATTCTTTGCCCTGG GGAATGTCAATCCAGCTGCAGAAGCAAATGTAAGTTGTGAATTTCTGTTCGTTATGTCTTCTTCTATTAGAAAAAGCTGG AAGGATTAATTTCCTTTGGGCTTTTCCATTGATGTTCTGTGATTTTCATATGTTTGAGAAAAATTTGCACCAGAAAGTTT ACATTTAACATGTCCTCTATTTTTATTGTTTGATGTATCCTATTTCCTTTTCTACCTTTGCAGTTTTACTACTCTTTTTC TCAAAGGTGACTTTAGAAATACATATAACAGTAATTCATTACCAACTAATGAAATTATGTATAAGAGTAATATTTACTTA TGGGGTTAAAACTGAGCCTTCGTTTCTTTGTAAAAGTTTTCTGAAATTATACATGTCCTGATTTTCAATTATTTGCTTTA CACGGTATGCGAAACAGCTTGCAACATTTTGACATAATTTGTTGAATTTGTATGTTGGTGCTTAGTTGTAGGTAGCATGT ACCAATCAATAGCGGTAACTGACTAATTGGTAATAGTTAGTGAATAAGTGCCTCTGTTGTGATCTGAAAAACAATCTCCT CTTTTGTGAAGAGAAAGCCTCTTTTTGGCTTCTTGAGGACTATACCGGACACTCTCCATTCACTCGACACCATATATTAC ATCACGCAAAATGGATTTCATTTTAGACTTATCTCAAATATCTGATTCCATATAATATTGGTCAAGTCCTGATAACTATT CTTTAACTTGCAGATCTATGGAGACCCAGAAGCAGCAGATGTTGTATTTACGTCTGGAGCAAATATTGTTGTTGTAGGAA TAAACATTACAACCCAAGTCACATTAACAGGTGGGGTTGTAATCCTAGTGTGCACCAATTTCTAGGCTATCTTAAGCTAT TTGCTTTTGTTCTAGGTTAGGGACTTGAAAGTGAACATTGTTTATTGGTTTCAGACGCTGATCTCCTTAAACTGAAGGAA TCCAAAGGAAAGCATGCTTCTCTCTTGAGTGACATGTGCAAGTTCTATAGGGATTGGCATGTAAAATCTGACGGACTACA TGGTAATTTTACATACTATTGATGTCGTGAGTTATGCACTTATGCTAATAAGGCCTACATCTTTAGCTAACTATTAAATT AAAGGCCTACATGTTTAGTTAACTATTCAAGTTAAGGTCTTCATCTTTAACTGTTAGAGTTTGCATAGGAATGATGATTT TATTTCTTCTTTCAGGAATTTTCCTTCACGACCCTGTTAGTTTTGTGGCAGTTGTGCGTCCAGAACTTTTCACATACAAA AAGGGGGTTGTGCGAGTAGAGACACAGGGCATCTGTGTCGGGCATACACTTATGGACCAAGGATTAAAAAAGTTCGTCCG AATTCAAAACTAGTATCCTTATCAACTTTATTATTGATGCCAAAAAAATTGTGCTTAACATGATTGGTTTCATTTCTCAT ACAGATGGAATACAAGCAATCCATGGACAGATTATTCTCCTGTTTCAGTTGCTTGGACGGTGGATATTGAGGGAGTTCTT AATTATGTTAGGGAAGTATTGATGAAACCCTGAAGTCTAGGCATTTGTACTACTACCCTTCCAACCAATGTCAAAATTGG TAAGGCCATTCTCTTTAGTTACACATTGTCAACCAGAAAACTCTGGGTGTCAAGGTTCTCAATGGCTCCCAAAGAAGTTC TCTTTACACGAAATAACTTGTCTTTGGATGTCACTAAGACACTATCTTCTTTGACAATCACGCAATCATTCTCTATTTTC CTTCTTTGGAACATGTATATGGGGCTTCTTGCTCTGGTTTTTATACAACAATTTCGGTTTCAACATTCAAGTAAATGACT TCTTTGCACTTATTTGGCATGAAAGTTCATAATTCCACAAATCTCAGATCAGATGGAAGGGCATGAAATCAAGTTGGAAA TTGTTTTGTTATGCAAAATACTAAACTGCATGATTTGAGGAATTGGGTTTCTTGTTCTTGAAACTACGTAATATTCAATA TTCAAAGATGAGAATCATTCCCAAGTATTGTCAGTTATGATTTTTGCATTAATGAATAGTATTAAGTTGAAATTCAAATG AAGTGAGCCAGAACAAGTCAAGGTTGAAAGTTGAAAGACACTCCCTACATCGGGATAAGGAAAATGTTCTCCTGAAAATA AGCCAAGTGCCAAAGTCAAACAAGTTATTCTGATAAAAAAATTGAATTTATGCACAAGATACGTGAACATGTGCATTGGT ATTTCAAGCAAAATTTGCTAGAAAAGCGTTAAAATATGATATAAAATTATTTATATATTCCAACCGCTTACATTTTTTGG ATAATAGGTTCATGAGACAAACCAAATTTAATAATTAGATAAATACTAACAACACTTTTTTTTAAACACACTATTCTACA TTCTTTCTTGATATGGCTGATGTATCAACTAAGAGATCACATTGAACACGGAGTATGAAGAACCAACTCTAATAAACAAT ACCACTTCTTCCATTTACCACCATAATTAAGTGAGAAATGATAATGAGACATCCATTCAAATAATAATAATAATAAGACA TGATTAGTGTAGACAAACACTCCATTATAAATACCTCATTTTTCTCTTTATTTATTTTTTATCTCTTTTTCATATATCAC ATTAATTTCTTTTATTTCTTCTCTTCATTTCTCAATCTAGTGATCGAAAATTTGTAGTGTACTATGGAAATGTTTATAAA TCATTTTTCTGATTAAATAAACTCGTCCCGCATTTACCATCATGTCTAATTCTATAAGTTCCCCGATTCAAGTTTTGTGC GTATAGAAAATACATTGGAAAAGCTAACCCCATCTCATTAAAAAAGAAAAGTGTCCTGCTTGGCTGCTTTCAGCTGATCA GTTTTTCCATGCACCTACTTCAACGAATGGACCATTTCAACTCCCGCTAAGGTCTGCGTCTACCCACTCCAACAACCAGT GAAAGGTCCTCTTCTCTTATATAACTCATGTACGTATGTATTATATATGCATATGCCTTTTAAGTTAAGACCAAGGATAA TCTTTTTAAATAGCTAAAACCTTTGAGAAGTTCACATCAAACAAGCAAGTTAAGAGTAAATATATAAATAGTTGAACAAG CTAGGCATATATAGCTTGTGAGTTGTGAGTGTTCTTCATTAGCAATGGCAGAGAAGAAGGTATCTTGTTACTATGCTCTG TTTGTGTCACTACTATTTGTTTCGAGCTTCTGCGAGTTCACGATGCAGAGGAATTGCAACAAGGGGTGTGATGAGGTATA TGTCGTTCGTGAGGGAGAGACTCTTCAAACAATCAGTGAAAGATGCGGGGATCCATATATTGTTGAAGAAAATCCACACA TCCAAGACCCGGATGATATTTTCCCTGGTCTTGTTATCAAGATTAACCCTTTCAACAATAGGTAGAACTTCAGTTTTTAA TCAATTCTTTCTGAACCTGAAACTCAGAAGCTATACAGAAGTTTCTTCACAGAATTGATTCTGACTGCAAAATCAATTGA AGAAGAGTTTCCCAACAGGCCAACATACAATACAAGAGTAGGAGGTCACATGATCTGTGTTTCATTTACGATGAGAATTT CCATGATACCGCATCAAGTACTTTCTACTTTCAGTTAGTAGGGAGGGGATGTGAGATTTGTAAATTCCTTGTTTTATATG ATTTTACTTCATAGGGACAGTGGACCCACATATCCAGTTCTTTGTAAAATAAACAATTACTGTATAATGTGTAAGAAGTA ATATTGAAATTAGAAGTGTAAATTACGTCATCTATCTAAGAGATCTTGTTTTCAAAGATAATGCATGACTGTATGAATTG AGACTTGAGAGATCTCTTATCCTCTCTGTTATAGGATTATTATCAGCATCCTTAATTTTTATGAAAAGGAAAAGCAGTCA TTTATTTTTCAAAGATGAAGAAAT
CDS sequence (LotjaGi1g1v0677200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTCCAGTCAACAACTCTCACGGTGGCGTCAACGGTGTCATTGCAGAAGCTCACAAGCTCATTATCGATACCGA CCCTGGGATCGATGATAGTATGGCAATTATGATGGCATTTCAAACTCCAGAGGTGGATGTCCTGGGTTTGACTTCCGTTT TTGGTAATGCTGCTACGGAAGATGCCACGCGCAATGCTTTGCTTTTGTGTGAGATCGCAGGCCGTGAAGATGTTCCAGTT GCAGAGGGAAGCCATGAGCCGTTAAAGGGTGGAAGGCCACGTGTTGCTGATTTCGTTCATGGTAAAGATGGATTGGGGAA CTTATTCCTACCTGATCCGAAAACTAAGAAAATTGAAAAAAGTGCAAGTGAGTTTTTAGTAGACAAGGTCTCTGAATTTC CTGGTGAAGTGACTGTACTAGCACTTGGACCCCTTACAAACGTAGCTTTAGCAGTCAAAAGAGATTCTTCTTTTGCAAGC AAGGTAAAGAGAATAGTTGTACTCGGCGGATCATTCTTTGCCCTGGGGAATGTCAATCCAGCTGCAGAAGCAAATATCTA TGGAGACCCAGAAGCAGCAGATGTTGTATTTACGTCTGGAGCAAATATTGTTGTTGTAGGAATAAACATTACAACCCAAG TCACATTAACAGACGCTGATCTCCTTAAACTGAAGGAATCCAAAGGAAAGCATGCTTCTCTCTTGAGTGACATGTGCAAG TTCTATAGGGATTGGCATGTAAAATCTGACGGACTACATGGAATTTTCCTTCACGACCCTGTTAGTTTTGTGGCAGTTGT GCGTCCAGAACTTTTCACATACAAAAAGGGGGTTGTGCGAGTAGAGACACAGGGCATCTGTGTCGGGCATACACTTATGG ACCAAGGATTAAAAAAATGGAATACAAGCAATCCATGGACAGATTATTCTCCTGTTTCAGTTGCTTGGACGGTGGATATT GAGGGAGTTCTTAATTATGTTAGGGAAGTATTGATGAAACCCTGA
Protein sequence (LotjaGi1g1v0677200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPVNNSHGGVNGVIAEAHKLIIDTDPGIDDSMAIMMAFQTPEVDVLGLTSVFGNAATEDATRNALLLCEIAGREDVPV AEGSHEPLKGGRPRVADFVHGKDGLGNLFLPDPKTKKIEKSASEFLVDKVSEFPGEVTVLALGPLTNVALAVKRDSSFAS KVKRIVVLGGSFFALGNVNPAAEANIYGDPEAADVVFTSGANIVVVGINITTQVTLTDADLLKLKESKGKHASLLSDMCK FYRDWHVKSDGLHGIFLHDPVSFVAVVRPELFTYKKGVVRVETQGICVGHTLMDQGLKKWNTSNPWTDYSPVSVAWTVDI EGVLNYVREVLMKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 334 | 328 | 3.4E-129 | ||
| PANTHER | 17 | 334 | 318 | 1.8E-191 | – | |
| PANTHER | 17 | 334 | 318 | 1.8E-191 | ||
| SUPERFAMILY | 19 | 331 | 313 | 8.5E-93 | ||
| Pfam | 20 | 324 | 305 | 3.6E-80 | ||
| CDD | 21 | 332 | 312 | 9.18343E-160 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0677200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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