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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0679100 |
| Transcript ID | LotjaGi1g1v0679100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAB6-interacting golgin (DUF662); TAIR: AT2G36410.2 transcriptional activator (DUF662); Swiss-Prot: sp|B1H222|GORAB_RAT RAB6-interacting golgin; TrEMBL-Plants: tr|I3SUV0|I3SUV0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0679100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124590165..124593042) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAAAAGAAAAGATATAGAAAGTGAGATATTTATTCTAAGCCAAGCTGGGATTATATATTATCTTTATATTCTTCAT TACATAGATTTCTTTTTTAATACACAATAAAATATTGACAGTTTTTGTTTGGTCCATAAAGGCAAAGGGTAAGGTAAGCT GCTAAGCTGGCTTGACACTTGAAAGGCCTTAAACTAAGGGAAACCCCAGAGACCATAAGAAGGAACAGGGGAAGGCAAAA AAAACAGAGCACTGAAGAAAGAAGCCTCATCATTTCAAAACCAAAACAAAGCACAAAGAAAAAGAAAAAGAGAAAGGGAA AGAAAGAGAGGAAAATAAAGAGGAGAATTCAAAGAAGAAGGGTTTCTAGCTGTTGAACAAGATGCAGGGTGGTGGTGAAC AACAGAACAACCAGTTGGTGGTGCAGAACTCAGGGAGTCTCAGCTTCAGCAGCCAAATGTCCAAGGAAGATGAGGAGATG TCAAGGTCTGCTCTTTCCAATTTCAAGGCCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTTAGAGAGAAGGTTCA GCTCCAGTTGGGTCGGGTTGAAGAAGAAACCAAACGTCTTGCTACCATTCGTGAGGTTTGTTTTTCAGATTTTACTATGA CTATGATTTCTCACCAAAATTTCAGCTTCACCTAACTGGGATACCCCTTTTGGTTCTTGATTTGTTTGTTGTTAACAGAA TTTGTTTTGGCCTTGTATGGAACATAAAGTTTTGAATTTTTGTTTCTGAGTTAACAAGATTTTGCTCTGTTTTCATGCTT ATTTTTGTGTATAAATTGGGTTTTCTTGAAACCAGGGGTTTGCAGAACATCTAGAGCACTTGAATATACCAGATCTGTGG TTTTCTTCACGAGACAAAGTGATTTTGCAACAAAAAGAAACGTTATCTTTTTCTTTCTGTTGTGGTTTTTGAGGAAAAGA ATTCAAAATTTGAACTTTGTTATTTACCCTGAATTTATGTTCTTGTCAGATAGTAGTATCAGGGTATGAACCAAATAATT TAATATTTTGGCTTTCTAGAACTTTCTTGGCCCCCATGATTTTTCCTTTTTTTTTGTTAGAAAATAAAAAATATCCTATA TAGTCTGTGTCATGTAGACAGGATGGAATTGGAGTTTAATAAATTTTTAAATATTTTGCTTAGATGTTTCTTTGTCTGTA AATTTTGTTATTTAGTGTCCCTTTGATTTGTGATTGAACTCAACCTGGTTCACATTTAAATCAATGTGACAAAATCTTAT TTCTATGTTGATGTGTTGAGATGTGTGTTTTCTTGTTTGTGCTGATGCCTAATTGAATAATTCCATATTGATGTGTAATT GAATAATTCCAAACTTCTGATATGAATATCAGGAGCTTGAATCCCTAGCTGATCCAATGAGGAAGGAAGTTGCAATTGTC CGAAAAAGGATTGATTCTGTAAACAAGGAATTAAAGCCACTAGGTCATACCTGCCAGAAGAAGGTGAGGCTTATTGAATT TCATAGGAACTGATAGTACACCTTGTTTGATGATTATGTACTCTCCATACTATTAGCATATCTGGATCAACTTGTTTTTC TCAGAATCAATTTAGCACCTAGAAGCTACTCTACTCACATAAGTTTCTCCACATAATTGATTTTGACTTTACAATCAATT GTAGAAAGTTTTCCAAACATGCTATCTAGTATCTATGGGTTATGACATTTTTTAGGGACACCATTGAAATTGAGTTTTGT ATACATTGCTTTACAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAAAAGTACAGCTAA TCACCAGGCTAATGGAGGTGAGTGACGTGAGTCTCACATTCCAGATTCTCATTGCAAATGAATTATTTGAATACATAACT TTCTTTATCCTGACATGTGGGATTTTCTGTTGTTATCAGCTGGTGAGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGA GGAGCTGAGTAAGAACATAGATTCCTTGAAATGATTCTGCTGCCAACTGCTGCTAATGACTCTCTGATTAGGCTTGTGTG GTATATGAAAGATGACATAGTAGTATATTTTATATGAATGTATGGGTTGGTCTTGTGCTTGTGTAGTTCTGTGGTGTCGT TATTTGTTTGTTTAACTAGCATTTGATGATGGGACATTAGCTAGTTTAGGAGGGCTATACCCTACAAACAAACAGGCTTG TAACTATATACTTGCATTCTGTTGTCAATTTTTTTACCCTGTCAATTCTCTTTTCTCTGCTTTGTTCTTCTCATTTAATT TATTGATGTAATTTGAATTTTGTTGCCAAGAAGTTTGGTTCCAAGAAAGAAGCCCTGGTGTTCTATTAGTATTTGATCTA TCAATACGAGCTGAGTGTAACATTATGCACTCATCTAGTGTGTTTGAATATTTGTTGAGTGGAGCGTGAGCGCACCTTCA TTAATTTCATAACAGTTATATTCATTTTTGTATCTTAACGTGTGTGCTATTATCAGTTTACGATGATGCAAACAAATATA CAAACAAATCCTGTGTTTGGTTTGAAAGTTCGAATCAATACCAATATGATTTCATGTATCTTGATACACTTATAAAAAAG CTAGAATTTACCTCATTAAGTTTAACGTGAATAAGCAAAACATGATTGTGACACGTTGACTCCAACGGCCAACATGAATC CACATATGCAATATGTGTGCTTTTAACCACTCATTTACACCAGAAAGATGTTATTGAGATAAGTTTATTATGGTTTACAC ATGCTAATTTACTTCTATGGCAAAAGTTGTTAATGCTCTAAAATGAGATTATTTAACCCTTTTAGAGTAATTAGACAA
CDS sequence (LotjaGi1g1v0679100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGGTGGTGGTGAACAACAGAACAACCAGTTGGTGGTGCAGAACTCAGGGAGTCTCAGCTTCAGCAGCCAAATGTC CAAGGAAGATGAGGAGATGTCAAGGTCTGCTCTTTCCAATTTCAAGGCCAAGGAGGAAGAGATTGAGAGGAAGAAGATGG AGGTTAGAGAGAAGGTTCAGCTCCAGTTGGGTCGGGTTGAAGAAGAAACCAAACGTCTTGCTACCATTCGTGAGGAGCTT GAATCCCTAGCTGATCCAATGAGGAAGGAAGTTGCAATTGTCCGAAAAAGGATTGATTCTGTAAACAAGGAATTAAAGCC ACTAGGTCATACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTTGAAGCTTTTAATGAAAAGAACAGGGAAAAAG TACAGCTAATCACCAGGCTAATGGAGCTGGTGAGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAG AACATAGATTCCTTGAAATGA
Protein sequence (LotjaGi1g1v0679100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGGGEQQNNQLVVQNSGSLSFSSQMSKEDEEMSRSALSNFKAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREEL ESLADPMRKEVAIVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEKNREKVQLITRLMELVSESERLRMKKLEELSK NIDSLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 6 | 165 | 160 | 2.6E-89 | – | |
| PANTHER | 6 | 165 | 160 | 2.6E-89 | ||
| Pfam | 15 | 164 | 150 | 2.4E-76 | ||
| MobiDBLite | 28 | 47 | 20 | - | – | |
| Coils | 38 | 58 | 21 | - | – | |
| Coils | 112 | 132 | 21 | - | – | |
| Coils | 155 | 166 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0679100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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