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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0680300 |
| Transcript ID | LotjaGi1g1v0680300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Small RNA degrading nuclease; TAIR: AT5G67240.3 small RNA degrading nuclease 3; Swiss-Prot: sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3; TrEMBL-Plants: tr|I3SLN1|I3SLN1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0680300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124762589..124768289) extracted from Lotus japonicus Gifu genome v1.2.
TTTTAATCTCAGTTTCAGAGACTGAATTAAGTCGAAACCCTTGTTCATCTTCACGACGGCGCAGTCCTTCTTCTTCGAGG CCGCAGCACCACCCGATATTGAGAGTGAACATTCTTTCTCTTTCTCCTTCAAATCTTCTCCCTTCTCTTCACCCTTTGTT TCGAGGTATGCATAAAACTCTCTTTCTCCCCTGCTGTAAATTCTCGTATGGAAATTGGAGGTAAGCTGGTTCGCTCAGCC CAGTGGGCACGGCGGAGTGAGTGAGGAAAGTGGTGGTGGTGTCGGATAATAAGGGGATTGTGGATTTTGTGAATAGTTCT CTTTAGTTTTCCTATGATTCTATCAGTATCAGTATTATTCAAAATGTTTCTGAATTTTATGATAATTTTATTTTTCATCA ACAGCTCTTGTGAATTCACTTCATGGCGAATATGGACGACAAGATCGACGCCGCAGACAAAAAGGTAATGCTAATAAGGA TTTCATAATTGTATCTTATAGTCATTGTTAAGATAAAAGTTTTGATTATTGTTTTAATTGAAAAGTTAATCATTATTGGA CATAACAACCAAAAAAATATGAAAGCATGATTTCTAGATTCCCATTTATTTCTTCGGTTGTACGACTATGTCATCTAACG CTTACATGTGGGTAGGTGCTGGTTGATATTGTAAAATTGTCACAAAAAAGAGGCATGAAGGGTAATCTGGGAGACTGGAA AGAGTTCTTGAACAGTTATGATAAAAAGTTTGGGGCAAGTATGAGTGATCCAGCAAAGAGGACCCATGAAGTCTTGGCTG CATTTCTGAAGACTTTCTCCAAGGAGGATGATTTGAAGGTAAAGAATTTTGTAGCACCTTACCCATGCGCACATACATCT CTTCTTCTGATGAGGGGAAGTTAATAGTCTTCAAAATGAACCTTGTCCATTTCCTCCTTGTGCTCAGTTTTTTGCCAACA TCATGCGGCATCATTCAAATCAATACTCGGTAGAGAAACTGAAAGATAAATCTCATGATTCACCTGAGCAGGTATGTTTT CATAACGATCATTCTTTATGAAATTAGGCTAATTTTGTCAGTTAAGCTTTCTTTTTTAGATTATACCAGTACTTAAACTA CTAGTAAGTACTAATGTTTTTGTACTTGAGATTCTAGATGGGTTAAGGCTATTGAGTTATTTCTCAAATATTGATAAGAA TTTTGTTTTCATTTTTTTTTTGAACTTAATTTCTTTCTCCAATGTTTTAGACTTTCTTCCAAGAGCTAACCTTTTACTAT TGTTTCCTTAAATGATCCAACATTTTTATTGAATTTTATATTGGTTGTCAGCTATTTAATTACTATTATGTAAACCTTAT GCATTGTTTTTAATCACAAGTTACATATTGTAATTTTGTGAATTGGTTTTGTTCATTTTAACCTTGGCTCTTTGAATATT TCTTGTTGCTGACCTCATATCTAAATCTGGAACCCAAAATTTAAGAGACTGCAATTGATAATTACACAATGCAAAATATC TAAAATTTAGACATATTCTGATATTACTTTTGCTGTCAGTTATTCTTTATCCTTCCTACAGTCTTTTGTCACTGGTGATG GAATTCACGCTATTTTGAAATCAATTAGTGAAAATCTTTACCAATGGTGTTAATTTCATTACCTCCTGCATTTATTGGTG ATTGTGCTATGTTTTTTTTAACCTTCTGATGTTGGCAGTACAGGGGCTAGTCCAAATAACTCTCCAGCACCCATTATATC CATTGGATTATTCATTTCAATCAATTGATGAGGTTTGTTTACTTGTCACCATCTGTGCTTGAATTTTCTGGTCAACCTAT GTGCATTCAAAATGCTATTTAGTTCTTTTATATGTACACTGCTTATATGTGACCTGCTGCGTGGAATAATACATAAATAT GTGCATTGGTCTTTCTATTCTGTTCTAGTTGAAGATGCCATCAAAGAAGTTCCGAAGAAAATTAGCATCAATTTTTCAAC AATTTAAAAGAAGTCTTTCGATTATAACTCAAAGGAAAAAGTTGACTTGCATTCTGGATTGCAGTATTTGAATGTTGAAT ATGAAGCTTATGGCAATGATTGATAATTTGATATTTTACTGCTCATAGTTTCAGGGCATGAAAATTGAAAAAAAAATAGT ACGAAATAATCAAATTTTTGTTCATATGGATGCTTTAACATATGAATATTTAAATGAGTCACATGCTTTTGCTGATGATT TAAATGAACAATTTCACTTGGATGAGAAGAACTGTACAAATGGTTCACATTACTCATCCATTATCTGTGTTGCTTTTTAT TGTGGAAAATGAAGGGATGGGTAATTATAAACCTCAGAAAAAATAAAAAAGCGATGAGGTCTACTGCAATGGTTGCTGTT GATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCATTAGTTGAAGTCTGTGTGGTAGACCACAATTTAAAGGTAAT TTATTCATATTCTTCGTATTACTTGGGACCTCCTCCCTTAAAAAAAAATTCAGACCTTTATTTTAAATGACTTCTCCCTT TTGGGGCGTATATAGATAATTTTCAGAACTTTTCAGGTCAAGCTACACAAACGTGTAAAACCCGACAAAGCAATTGTAGA CTATAGAACAGAGGTTACTGGTGTCTCTTCTCGAGATCTAGAGACAGTTACGTGCACCTTGGCTGATATACAGGTATGTT ATGGTTCACTTTGTGGTTTTCCTATTTCATCCGTTCATGTGCTTAATGAAGAAATGTGTTGTATTTTCATAGAAAAAGAT GAAGAGGTTGTTATCAAATGGAACCATATTGGTCGGACACAGTTTAGACAATGATCTACGTGGTAAGTGTCAAACATCTG TTTGGCTGTGTCCTTGAACCTACTGTTAGTTTTTTAGTTAATGAAGGGAATCACTTCTTGTTGAATTGTTTTCTTGGTCC TATTTTTTTACTGATTGCGTTCGTTTGCAGTGCTGAAGCTAGATCATGTTAGAGTGGTTGACACTGCATATATCTTCCAA TCCTTGGATGGATCTATTCACAGGAAACCTTCTTTGAACGGTTTATGTCAGGCAAGTAGCAAATTGTTTACATGCAAAGA TTAGGTTCTGTATTACATGCCATCTTATTTATGAAGCATTATGATGTGTTATAACCAGATGGTCAGGTTTTGTTTGATTC CCTTTTCAGTTTTCTGAATTTAAATATTGTTCAGAAATAATATATAAAATCCATTTTTAAGAAGAAAAAAACGGTTTGAG CAATATATTTTTCAATGCTAAAAAAACTTATTTGGAAACTAAAAATAGACAGAAAACATATATTTTAAACTGAAAATAAG AACTGTTTCTAAGTACAGTTTTTTAAAATTGTTCATACGAAACAAGTTTTCACATTTTCTGTTTTAAAAAACAAAAAACT GTTTTACAAGACAATAATCAAAGACCCTCACTCTTTTTGTTGAATTCCCTTAGACACATTATTTTGAATGTGAAGTCTCC TTGCGCATTTGTGCTGGTTTATGCTTTGGAATTTAAAAGCATACACCATACAAACACAGACTAGCAAATTATGGCAAAAG AACAAAGAAGAAACAGACAGCAAACTGATTTAAGATTCATAGTTTGTTACCAATTGTTGTGACAGGCTGTGTTAGGCTAT GAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGACGATGCATGTGCAGCAATGAAACTTGTTCTTGCAAGGATCAA GCATGGCGTCGATAAAGAATTTCCATTTACGTTGGTTCAGGAGCATGTAAGCTGTCTTGTATATCTCATGTACTGTTGTA CTCATGGTGGTAGGTATCTAAATGTCATAACTGTTCCGTTCTCTCATTTCAGGTTTCAGAAAGTGATATGACAAAGCTGC TTCTGCACGGGATACCAACCTCTGTAAACATTGAAACACTACATAAAATTGTTCCTGGAGACTTCACAACAGAAGTGAAG GTAAAGTATGTCCTAACCTTAAGGTTTTGATGAAGATTGAAGAGATTCTTTAGTAATTTTTTGAATAAGTAATTATATAC AATTTACAAAGGCTAGACTACCGAATTAAGGAAATAAGTAATTATATACAATATCTTTCTTATTCTTCTAAATAAAAATC AAAACTCTAACAACATAATATGAAGTCAGATTACATCTCAATGTTACAACACTATCATTATCATGTCCACCACAAACAGA TGATAGGATAATAGCTTATTCTACTCTTATGACATCCGGCTCTTATCCAACTCTCTTATTCTATCCTAACCACCAAGCTG GCTTTTGGTTTTGTCTCATAGTACTCTTGTTCTGCTATTGGATTTTTTCCTTGTTTGAGATCTGATTTGTTATAGAATTT GCTTGCAGCCATCCAGGAAAGGTCAAAGAGCGAAATATTCTGCTTTAGCTACCTTTAAGAATCAACAAGAGGCATATGAG GCCTATGAAAATGTCCAAGGAAGCCAAACAAAGGTACTTAGTACACTACATTTATGATGTACCAATGTTCAATGATGCTA CTTGATACAGCTAAATTTTCTTGTTAATTAACTAAAGGGATGAAATGGTCAAAGGTAGATTCCCTTCTCTACAATAATAC TTAAATCCATTTTTCTAATCGGACGTTTCAAGTTTAGACTTGTATTATTTTTGCCCCTCCGAAAATCTGATTGACAAAAT AACTTATCCTAATGCTTGTTAAACAAAATGAAGATATTTTTTCCGGACAACTTTCTGTTGATAAATTGATATTGTAGCAC TTTGTACACTTTTTGGAATGCTTTAACCTCATGCTTTGATGTTTATTACTTTATATTAGGATTCATTTGGACGTCCACAG AAAGAAGTCATGTTTCAGCCAAGTACAGGCATGACTGTGAGTCTATTTGTTCGGAAAATGACAGCTGATGAACCCGATAA CCTGCTTCAATCTAAGAGAGCTTTGCAAGTGGATGAGGCAGATGAGGCAGTTAATGCTTCCAAAAAAGCAAAGACGGTTC CTCAAATTGAAGAGGATGCCCTGATAGGCTCTACTAAGGGTGACACTTGCACCCACTTGAAAGAGATTGAAGCACTGAAT GAACAATTGAAGCAAAAAGATTTGGAGATTGAATCGTTGAGGGAGCAGTTAAGAAAGAGAGATTTTGAAGTCTCCAAGCT GCATATAATGATATCCTCCTTGAAAAAGCGAACAGACAAAACAAGGAACAAATTTGCTGTTCTCCAGGAGGATTGAATAC ACAGTACTCGACATTTACAAAAGTTATGTCGAGGCTCCGCTTGGGAGAAACATGGAGCTTTGGTACATTTGGTAGTGCTT GTTCTATTCTGCCATTCAAATTTGGAACTAAAATTTTGTCTCGGAGGGATGAGCACGTGAAATGATGTTATAAACTAACC ATGAACCTTACACCAGTAACATCACTCATTTTGCAATTTTGTTAGATTAGGGTTCTTTCATGTTGTTGTGGTATGTAATT GTTTGAAACATTTTTTTTAATCTTCTTTCTAGTTCCAACCTGAATTTATTAAATATCAATAGCATTGACATTGAGGGCTC CCTTTAGGTGTAAGCATTCAAGATTTCAAGTGCTATCAAATAGTCATTCAGATGAATTATGGGCTACTGGTTGAGCATAT TAGTGCTTATGATATTGGGAA
CDS sequence (LotjaGi1g1v0680300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATATGGACGACAAGATCGACGCCGCAGACAAAAAGGTGCTGGTTGATATTGTAAAATTGTCACAAAAAAGAGG CATGAAGGGTAATCTGGGAGACTGGAAAGAGTTCTTGAACAGTTATGATAAAAAGTTTGGGGCAAGTATGAGTGATCCAG CAAAGAGGACCCATGAAGTCTTGGCTGCATTTCTGAAGACTTTCTCCAAGGAGGATGATTTGAAGTTTTTTGCCAACATC ATGCGGCATCATTCAAATCAATACTCGGTAGAGAAACTGAAAGATAAATCTCATGATTCACCTGAGCAGGGGCTAGTCCA AATAACTCTCCAGCACCCATTATATCCATTGGATTATTCATTTCAATCAATTGATGAGGGATGGGTAATTATAAACCTCA GAAAAAATAAAAAAGCGATGAGGTCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAA GCATTAGTTGAAGTCTGTGTGGTAGACCACAATTTAAAGGTCAAGCTACACAAACGTGTAAAACCCGACAAAGCAATTGT AGACTATAGAACAGAGGTTACTGGTGTCTCTTCTCGAGATCTAGAGACAGTTACGTGCACCTTGGCTGATATACAGAAAA AGATGAAGAGGTTGTTATCAAATGGAACCATATTGGTCGGACACAGTTTAGACAATGATCTACGTGTGCTGAAGCTAGAT CATGTTAGAGTGGTTGACACTGCATATATCTTCCAATCCTTGGATGGATCTATTCACAGGAAACCTTCTTTGAACGGTTT ATGTCAGGCTGTGTTAGGCTATGAAGTTCGGGAAAAGGGTGCTCCACATAATTGTCTAGACGATGCATGTGCAGCAATGA AACTTGTTCTTGCAAGGATCAAGCATGGCGTCGATAAAGAATTTCCATTTACGTTGGTTCAGGAGCATGTTTCAGAAAGT GATATGACAAAGCTGCTTCTGCACGGGATACCAACCTCTGTAAACATTGAAACACTACATAAAATTGTTCCTGGAGACTT CACAACAGAAGTGAAGCCATCCAGGAAAGGTCAAAGAGCGAAATATTCTGCTTTAGCTACCTTTAAGAATCAACAAGAGG CATATGAGGCCTATGAAAATGTCCAAGGAAGCCAAACAAAGGATTCATTTGGACGTCCACAGAAAGAAGTCATGTTTCAG CCAAGTACAGGCATGACTGTGAGTCTATTTGTTCGGAAAATGACAGCTGATGAACCCGATAACCTGCTTCAATCTAAGAG AGCTTTGCAAGTGGATGAGGCAGATGAGGCAGTTAATGCTTCCAAAAAAGCAAAGACGGTTCCTCAAATTGAAGAGGATG CCCTGATAGGCTCTACTAAGGGTGACACTTGCACCCACTTGAAAGAGATTGAAGCACTGAATGAACAATTGAAGCAAAAA GATTTGGAGATTGAATCGTTGAGGGAGCAGTTAAGAAAGAGAGATTTTGAAGTCTCCAAGCTGCATATAATGATATCCTC CTTGAAAAAGCGAACAGACAAAACAAGGAACAAATTTGCTGTTCTCCAGGAGGATTGA
Protein sequence (LotjaGi1g1v0680300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANMDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAAFLKTFSKEDDLKFFANI MRHHSNQYSVEKLKDKSHDSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAMRSTAMVAVDCEMVLCEDGTE ALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLD HVRVVDTAYIFQSLDGSIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSES DMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTKDSFGRPQKEVMFQ PSTGMTVSLFVRKMTADEPDNLLQSKRALQVDEADEAVNASKKAKTVPQIEEDALIGSTKGDTCTHLKEIEALNEQLKQK DLEIESLREQLRKRDFEVSKLHIMISSLKKRTDKTRNKFAVLQED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 455 | 452 | 3.8E-185 | – | |
| PANTHER | 4 | 455 | 452 | 3.8E-185 | – | |
| Gene3D | 141 | 316 | 176 | 4.2E-43 | ||
| SMART | 144 | 305 | 162 | 6.6E-34 | ||
| SUPERFAMILY | 145 | 301 | 157 | 2.82E-28 | ||
| Pfam | 146 | 295 | 150 | 1.4E-7 | ||
| CDD | 146 | 297 | 152 | 6.41971E-63 | ||
| Coils | 201 | 221 | 21 | - | – | |
| Coils | 470 | 494 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0680300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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