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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0682600 |
| Transcript ID | LotjaGi1g1v0682600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic; TAIR: AT2G36650.1 CHUP1-like protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|V7CZX2|V7CZX2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0682600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125000317..125003271) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTTAACAAGTGAAAATTAAAACGTTACGTATGTATGATATCCCATGGAAAAAAAGAACCTTGAAAATTTATTAATC CAGAAAAGAATTAGATTCCAAAGAGCACCATGAGGGCGAGTTGATGGCATTTGATGGTGTAGAATGCCTCTTAGGGTGGT CAAAAAGCTACATCATAGTTCTTGTTCCCTCTCAGTGCCAATGACACAAACTCAGGTAATCCAAACCTTCTTTCAAACAC ATAACAAGCAATAAAATCAGATTTTTGGTAGTGGAATTGACAGGGAAAAAATTCTAACAAAATTGCTGAAACTTGTTTTT CTTCAGAATGGAGAACACAGCATCAAAACATGAACTCATAAAGCCAGTAATCCTCAAAGCTGGTATTCCTTTGGCCTTGT CTTTGGCTGGTGTCATCTATGCCTGGATCAGCACAAAGAAAAGGTTATCCTCTAATTTATCAGCAAATCATGCAAATTCC CCTGAAACCAATTCTCACCAGGAGCATAAGCATGAAGAAAGTTGCCATAGTCATAGCCTTGCTTCTATTGAAGATGAAGG ATGCAGTACTACCTCAATGGATGCTAGTGTTTTTTGTTTAGAACAAGAGATTTCTGGCCTAAGAAGCCAAATTGAAGGTA TGAAAATAAGAGAATTGGCCTTGCGTTTTCAGTTTGATCAGTATTGTGATTTGAAAGAGCAACAATCTCTGCTTGGTGAG ATGAAGAACATGATGTCTCTGGAGACCGCCCGCGTGGACTTATTGGATAGGGAGATTTCATCCATGGAGACAGAGAATAA GAGATTGGAGAATTTCGCAGTTCAATATCTCAGAGTTGTTGAACAGATTGAGTATTGGAAATCTGAGAATAGAATGCTGA GGAAAAAGCTTCAGAAGCTAATGAGGAAATCAAAGGCGCTAACACGCCTCACAAAGGAGCAGGCTTTGAAGATCAAAGAG GAAGAAGCAGAAATTTCAAGAAACCGTGATGCCTTGGGAACAAAAATGAATGTTATTGACAAATTAGAGGATGAAATGAG AGAGCTGCAAAGGGTTTTAGATTTATTGCAGGATGAGAAGAATGAACTTCAGAAGAAGCTTGACATAGCAGAAAAATCAT ATCATGAGTCTAAGGTAAGCATCAGATACACATAAAACCAATCATTTAAGTATGTGTTTGGATATCAGTCAGTGCAACGT GAGCGTCTTTCGTTATAATATATAAGAAGAGTTATGTTCACTTTTTGGTCTTGAAGTGTGTGCTAACGTCCATTTCCACT GGTATTAACATCCGTTTGCACTGGTCCTAATAGATATCCAAACATGACTTGTTGAAATCTAAAAGGTCTCTCAGATCCAC TATCTAAGATAAACAACAATCAATAATAGAATAGGGTGTTCATGAGTTCAATTTGATTAAGGTGTACACTATTAATCAAT CATATAGTGGCCTGTTATTGGTTATGTCCCTATTTTTGTCTCTTGTTCCCTTAATCAAAGTAGAACAATTGAGTTTTTTT TTTCCGCTTTCAATGGGGGACAAGAAAAGAAAATAGATTATCTCAATTTGTTGGAATATCTAGCCGTTTGGTTGTAGACC AGACCAAAGAACACTTATTGGAGCTTCTTTGGTACATTTTCTAGTAGACAAGCTCCAATAAACCTGTACCCGTGTATCCA AACGATTCTATGAAATCTTTGATTTCTTTGATGGAGGATTATTAGCATTAGCATCCTAATCATTACATTGTTAGGCTTTC CATTTGCAGACTGAAGCAGGGGATGTAAGTAGGGAAGAATACAAACAGCTTCTGGATGAATTGGAGAGGACCAAGAAGGA AAGAACAGATGAAGCTAATGAACTCATCCACTTGCGGTGGACCAATGCTTGCCTAAGGCATGACCTTATGAGGCACCAAG AACAACAACAACAAAATCAGGATAGAAACCATATAGAACTGGAATTTGGAGGAAGCCATGAAGTTATCCATTATGACTCG GAGCATGAATTACGCCACCATTCCCCTTTGGAGCATCATAGTTTTCCTTCCTCTGAGGAGCATCATAGATACAGTGCTTG TTCGAAAAGGAAAAAGTTGCTTGGAAGGCTAAAGAGATGGGTGGAAGGAAGTGAAAAGCCAAGAGTGAGGCATTCTGTTT CAAGAGGGGTAGAGAAACATCATGTTCCTGCAAGGATGTCATGCTCTAGTGATATAGTTTGAGTTACATTCCACTCCATC TCATACCATTTACCATGTAGTTGTCTCATGTCTGCACTTGAGAGAGAAGACAGAAACTTACTTTGGATAGGAGCAGGACA GTGAGAGTGTGAGTATGGCTATTCAGATAAATGTTTAACAACAGATATGCAATTACATCCATGTCTTTTCCCTGATACAT AATGATCTAACTATTATTCTGTTTTCTCATTCAATAATACTCATCGAGTCCATAATTTTTATTCTGTTGCTTATCACTGT GTATGGAAAAAGAAAAAAAAAACTGAAACAAGCATTGCCCACTATATTATCACTTAAGCACACCATTTGATGGTTAATGG ATCATTGTTTAAGAAGTGGTGCATGGTGCATTGGTGACACAACCTTACGCAAGATTGATATTGTGTAGCATCTTTCTTTA AAAACTATGGCAAAAAATAAATTTGATGTTGGATTGATTGTAATGTAAGTCTCACATTGCTAATGTTAATGAAGGAAGAA AGAGGTCAAAGAAAACACATTGAAAAAATCTCACATTGCCTAGCATGATGAAGGGTGGGAGAGTCCAAAGGGATATTGAG ACCTCAAGCTCCTTGTTTCAACATATCAAGTACCAACCCTAGGAAAGACTTTAAGCTTATATTTGTGTTTTTTTTTTCTC TTATACTCTTGTTTTAGAGTATTGTTAGTAGATGTAGTTTAAATATTTGCATTGGAGAGTGTGAGTGTATTAGGG
CDS sequence (LotjaGi1g1v0682600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACACAGCATCAAAACATGAACTCATAAAGCCAGTAATCCTCAAAGCTGGTATTCCTTTGGCCTTGTCTTTGGC TGGTGTCATCTATGCCTGGATCAGCACAAAGAAAAGGTTATCCTCTAATTTATCAGCAAATCATGCAAATTCCCCTGAAA CCAATTCTCACCAGGAGCATAAGCATGAAGAAAGTTGCCATAGTCATAGCCTTGCTTCTATTGAAGATGAAGGATGCAGT ACTACCTCAATGGATGCTAGTGTTTTTTGTTTAGAACAAGAGATTTCTGGCCTAAGAAGCCAAATTGAAGGTATGAAAAT AAGAGAATTGGCCTTGCGTTTTCAGTTTGATCAGTATTGTGATTTGAAAGAGCAACAATCTCTGCTTGGTGAGATGAAGA ACATGATGTCTCTGGAGACCGCCCGCGTGGACTTATTGGATAGGGAGATTTCATCCATGGAGACAGAGAATAAGAGATTG GAGAATTTCGCAGTTCAATATCTCAGAGTTGTTGAACAGATTGAGTATTGGAAATCTGAGAATAGAATGCTGAGGAAAAA GCTTCAGAAGCTAATGAGGAAATCAAAGGCGCTAACACGCCTCACAAAGGAGCAGGCTTTGAAGATCAAAGAGGAAGAAG CAGAAATTTCAAGAAACCGTGATGCCTTGGGAACAAAAATGAATGTTATTGACAAATTAGAGGATGAAATGAGAGAGCTG CAAAGGGTTTTAGATTTATTGCAGGATGAGAAGAATGAACTTCAGAAGAAGCTTGACATAGCAGAAAAATCATATCATGA GTCTAAGACTGAAGCAGGGGATGTAAGTAGGGAAGAATACAAACAGCTTCTGGATGAATTGGAGAGGACCAAGAAGGAAA GAACAGATGAAGCTAATGAACTCATCCACTTGCGGTGGACCAATGCTTGCCTAAGGCATGACCTTATGAGGCACCAAGAA CAACAACAACAAAATCAGGATAGAAACCATATAGAACTGGAATTTGGAGGAAGCCATGAAGTTATCCATTATGACTCGGA GCATGAATTACGCCACCATTCCCCTTTGGAGCATCATAGTTTTCCTTCCTCTGAGGAGCATCATAGATACAGTGCTTGTT CGAAAAGGAAAAAGTTGCTTGGAAGGCTAAAGAGATGGGTGGAAGGAAGTGAAAAGCCAAGAGTGAGGCATTCTGTTTCA AGAGGGGTAGAGAAACATCATGTTCCTGCAAGGATGTCATGCTCTAGTGATATAGTTTGA
Protein sequence (LotjaGi1g1v0682600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENTASKHELIKPVILKAGIPLALSLAGVIYAWISTKKRLSSNLSANHANSPETNSHQEHKHEESCHSHSLASIEDEGCS TTSMDASVFCLEQEISGLRSQIEGMKIRELALRFQFDQYCDLKEQQSLLGEMKNMMSLETARVDLLDREISSMETENKRL ENFAVQYLRVVEQIEYWKSENRMLRKKLQKLMRKSKALTRLTKEQALKIKEEEAEISRNRDALGTKMNVIDKLEDEMREL QRVLDLLQDEKNELQKKLDIAEKSYHESKTEAGDVSREEYKQLLDELERTKKERTDEANELIHLRWTNACLRHDLMRHQE QQQQNQDRNHIELEFGGSHEVIHYDSEHELRHHSPLEHHSFPSSEEHHRYSACSKRKKLLGRLKRWVEGSEKPRVRHSVS RGVEKHHVPARMSCSSDIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 4 | 416 | 413 | 3.8E-145 | – | |
| PANTHER | 4 | 416 | 413 | 3.8E-145 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 14 | 34 | 21 | - | – | |
| Phobius | 35 | 419 | 385 | - | – | |
| MobiDBLite | 45 | 69 | 25 | - | – | |
| MobiDBLite | 54 | 69 | 16 | - | – | |
| Coils | 143 | 163 | 21 | - | – | |
| Coils | 174 | 201 | 28 | - | – | |
| Coils | 223 | 271 | 49 | - | – | |
| Coils | 273 | 304 | 32 | - | – | |
| MobiDBLite | 397 | 419 | 23 | - | – | |
| MobiDBLite | 397 | 411 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0682600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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