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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0683700 |
| Transcript ID | LotjaGi1g1v0683700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0683700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125067139..125068929) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGAAGTCTCAAGGCCGTGTAGTGTGGTTTAGTTTGTTGTTATTTTCCGATGTATAAAAAAATATCTAGTCTAATAAA ACAAACCTTATATGGAGGAAATTGCTATTTTGAATCCAATTTTTTAGTTTCACCTTTTCTCACACTCTTCTTTTGAAATC TCTATTTTCTAAATTTTGGATAATTGATTCAGTTTTAATTTACTTGATTCAGTTGTTATTTTACTTGTTTTATTTGTAGG CACTATCAAGTTTATTTAATTCAGTTAATTGTTGTTATTTCCTTCGTAATATATATATTTGGTATTTGATTCAAATATTC AGTTAACCTTGATAGGTATTACCAGTTGTTATCACAGCACCAATGGCTGATATAATTAGTGAGTTGCCAGACGACATTCT GCTTCACATCCTCTCGTTTCTTCCTACTGAAGATGTCATTGCCACTAGTCTTGTTTCAAAAAGGTGGAGGCCACTTTGGC TTTCAGTCCCCACCCTCCTCCATTTCGACCAGTATAGATACTTCAAACGACATCCTGAGAAACAAAAGAGGTGGTATTCC TTTGCTGAGTTCGTATATGCAGCCCTTCATAAACGAGGTTCGTGCCAACCAATCAAAGGGTTTCGCCTCCTCATATATGA TAATCTCCATTCCTATGATGTGAAGCAGTGGTTGAACAAAGCAATACAACATGGAGTTGAGAACCTTGAAGTCAACTGTT ATCCTGGATGCGAGTTACCTAGGAACTTCTTCAACTGCACAACACTCGTTGTTCTCAAGTTGGATTGGCCATATTTTCAT AATGGTTTTTCTTCTGTTTACCTTCCCTCTCTCAAAACCCTGCATTTGAATCCGCATGGGAATGGTCTTGCTTACTTTTC AAAGCCTCAAGATTTTTTGGAGCTTCTTTATGGATGTCCAATGCTTGAAAACCTGGTAGCAAAGAGTTTAATATTTTTGT ATTATTGTTCATTTGAGGGGAAACTTAAAAGTTTATCCAAGCTGGTCAGAGCAGAGGTTTGTGACCTCCGACGTAACACA GAAGTATTTGATATTCCTGTGAAAGTTTTGTCTAATGCAAAGTTTCTGTGCTTAACCCAGGTTTGTATATGGTAAAAGGA GAATGTTTATCTGTTATTTGTTTTTTATTTGTAGACTATGGAAAATGTTACTAATACTTGTGATAACTCACTCTTGCAGT GCAATGAAGACATTCCTATGTTTCCCAATTTAGTTCATTTGGAGCTCATTCGTGTTGAACTTAAATCGGTGCTGGATATA CTCAATTGCAGTCCTAACCTTCAAATATTTGTCCTTGATTTCAAATATTCTTCTGGTGAGGATTGGCCAAACCCAGAGTT TGTTCCGGAATGTTTTTATTTACAGCTCAAAAAGTGCGTTATTGCAAATTATACAGGCATGGCAAATCAGATGAGATTTG TTAAGTATGTTATACAAAACTCAACATCTTTAAGCTCCATGACAATAAGTTGCAGTAGTGATGATCATCAGAAAAAGCTT CAAATGCTAATAGAATTAGCCTCATTATGCCTAAGAAGCTCTGCAACCTGTCAACTTTTATTTAAGTAATGGATATGCCT GTTATTATTCCTAGATGGTCGCCATTGTAATTAGTTGGTCCTTTTGAAGAACATACTTTGTGTTTGGTTTTTAAATTTTG GATATGTGGAAATTTAACAGAAACTAAACTGAAATATGAATAGATTTTTAAATTTGCTGTTGGATGTGTATCCTTTTAAG TCTAAGCACTTTTTTATTTAACATAACTGCC
CDS sequence (LotjaGi1g1v0683700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATATAATTAGTGAGTTGCCAGACGACATTCTGCTTCACATCCTCTCGTTTCTTCCTACTGAAGATGTCATTGC CACTAGTCTTGTTTCAAAAAGGTGGAGGCCACTTTGGCTTTCAGTCCCCACCCTCCTCCATTTCGACCAGTATAGATACT TCAAACGACATCCTGAGAAACAAAAGAGGTGGTATTCCTTTGCTGAGTTCGTATATGCAGCCCTTCATAAACGAGGTTCG TGCCAACCAATCAAAGGGTTTCGCCTCCTCATATATGATAATCTCCATTCCTATGATGTGAAGCAGTGGTTGAACAAAGC AATACAACATGGAGTTGAGAACCTTGAAGTCAACTGTTATCCTGGATGCGAGTTACCTAGGAACTTCTTCAACTGCACAA CACTCGTTGTTCTCAAGTTGGATTGGCCATATTTTCATAATGGTTTTTCTTCTGTTTACCTTCCCTCTCTCAAAACCCTG CATTTGAATCCGCATGGGAATGGTCTTGCTTACTTTTCAAAGCCTCAAGATTTTTTGGAGCTTCTTTATGGATGTCCAAT GCTTGAAAACCTGGTAGCAAAGAGTTTAATATTTTTGTATTATTGTTCATTTGAGGGGAAACTTAAAAGTTTATCCAAGC TGGTCAGAGCAGAGGTTTGTGACCTCCGACGTAACACAGAAGTATTTGATATTCCTGTGAAAGTTTTGTCTAATGCAAAG TTTCTGTGCTTAACCCAGTGCAATGAAGACATTCCTATGTTTCCCAATTTAGTTCATTTGGAGCTCATTCGTGTTGAACT TAAATCGGTGCTGGATATACTCAATTGCAGTCCTAACCTTCAAATATTTGTCCTTGATTTCAAATATTCTTCTGGTGAGG ATTGGCCAAACCCAGAGTTTGTTCCGGAATGTTTTTATTTACAGCTCAAAAAGTGCGTTATTGCAAATTATACAGGCATG GCAAATCAGATGAGATTTGTTAAGTATGTTATACAAAACTCAACATCTTTAAGCTCCATGACAATAAGTTGCAGTAGTGA TGATCATCAGAAAAAGCTTCAAATGCTAATAGAATTAGCCTCATTATGCCTAAGAAGCTCTGCAACCTGTCAACTTTTAT TTAAGTAA
Protein sequence (LotjaGi1g1v0683700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADIISELPDDILLHILSFLPTEDVIATSLVSKRWRPLWLSVPTLLHFDQYRYFKRHPEKQKRWYSFAEFVYAALHKRGS CQPIKGFRLLIYDNLHSYDVKQWLNKAIQHGVENLEVNCYPGCELPRNFFNCTTLVVLKLDWPYFHNGFSSVYLPSLKTL HLNPHGNGLAYFSKPQDFLELLYGCPMLENLVAKSLIFLYYCSFEGKLKSLSKLVRAEVCDLRRNTEVFDIPVKVLSNAK FLCLTQCNEDIPMFPNLVHLELIRVELKSVLDILNCSPNLQIFVLDFKYSSGEDWPNPEFVPECFYLQLKKCVIANYTGM ANQMRFVKYVIQNSTSLSSMTISCSSDDHQKKLQMLIELASLCLRSSATCQLLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 45 | 44 | 5.0E-11 | – | |
| ProSiteProfiles | 2 | 57 | 56 | 12.094 | ||
| SUPERFAMILY | 3 | 69 | 67 | 2.75E-16 | ||
| PANTHER | 3 | 372 | 370 | 6.6E-67 | – | |
| PANTHER | 3 | 372 | 370 | 6.6E-67 | – | |
| Pfam | 4 | 41 | 38 | 2.1E-11 | ||
| SMART | 8 | 48 | 41 | 2.1E-7 | ||
| Gene3D | 82 | 372 | 291 | 2.1E-10 | ||
| SUPERFAMILY | 94 | 347 | 254 | 7.31E-9 | – | |
| Pfam | 298 | 342 | 45 | 7.7E-12 | ||
| SMART | 303 | 375 | 73 | 1.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0683700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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