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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0686600 |
| Transcript ID | LotjaGi1g1v0686600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A0R0EPR8|A0A0R0EPR8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0686600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125379004..125381607) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAATCAAGGAAATTAGAATCATTAGATTAATGCTACCATGACCAAAGTGGGAAGATTTGATACACATTAAAGAGACT AATTAAGTCACTAGCTATAAGATAAGCATCAAGGCCCAAAGAAAGATATGCTCATCTTACTACCCTAAGTCTGTGTTAGA ACTTAATGCAGTATCCTAAAAAATCATTTTTCACATGTCATTTTATTTATGAACAGAGCAACTAACATTCTATCCATAAT TCCATATAGACCAGCCCCTTCCTCTATATATACATGCTTAACCATAACCTCTCATCCAGTACCAAAAACCAAAACAAAGA GTGCTTGATCACAAAACACAACAGAGAAAATGGTGACAGCAGAATTCAACAGTGGTGGTGGCCATGGTGGCTGGAGAGGA ACAAAGACCTTCATCTACCAAGTCCTCACCGGCCGTTGGTTCATGCTATTTGCCTCTAAACTAATCATGGCTGTTGCTGG TGCAACCTACATGTTTGGCCTATACTCCAACGTTGTCAAATCCTCTTTAGGCTATGATCAATCCACTCTCAACCTTCTCA GCTTCTTCAAAGACCTTGGTGCCAATGTTGGTGTCATCTCAGGGCTAATCAACGAGGTCTCGCCGCCATGGGTGGTGCTC TCAATTGGAGTCACCATGAACTTCTTTGGCTACTTCATGATATGGCTTGCTGTCACAGGCCACATTCCCAAACCCCAAGT TTGGCACATGTGTCTCTACATTTGCCTAGGTGCAAATTCACAAACTTTTGCAAATACTGGCGCTTTGGTCACTTGTGTCA AGAACTTCCCTGGAAGTAGAGGAAGTGTTTTAGGCCTTCTCAAAGGTTATGTTGGGCTAAGTGGTGCTATAATCACTCAG CTTTACCATGCTCTCTATGGTGACAATTCAGAATCTCTCATCTTGCTCATTGCTTGGCTCCCTGCAGCTGTTTCCTCTGT TTTTCTTCCAACAATTAGGATGTTGAAGTTGAGCACTTCACAACAACAACAAAAGGAGCACAAAGTTTTCTACAATTTTC TTTACATGTCACTTGGCTTTGCAGGGTTTCTCATGGTCTTGATCATTGTTCAAAAGAATTGGAGTTTTTCAAGGATTGAG TACATTGCTGATGGAATTGGAGTTATTTTTCTGCTTCTTCTCCCACTTGCTCTGGTTTTCAGAGAGGAACTCAAGCTCTT GAAGGACAACACTCAATCTTTCTCTGACCCATCTCAATTAAAAGTAGTCACTGAAGTTCCAACTCCAAATATGGCACCAC CACAGGTTGTGGTACCATCTTCTACCAACAACACAAGCTCACACAAGAAAGGCTCTTGTTGGAGAACCATTTTCAAACCC CCAAACAGGGGAGAAGACTACACCATTCTGCAAGCCCTGTTCAGCATTGACATGTTGATTCTCTTCATAGCAACAACATT TGGTGTTGGTGGAACACTAACTGCAATTGACAACCTAGGACAAATTGGGAACTCATTAGGATACCCAAGTAAAAGCATAA CCACCTTTGTATCCCTAGTGAGCATATGGAACTATCTTGGAAGAGTGGTTTCTGGCTATCTCTCTGAAATCTTCTTAACA AAATACAAGTTCCCTCGTCCTTACATGCTAACTCTAGTTATGCTTCTATCTTGTGTTGGTCATGTTCTAATAGCTCTTGG TTTACCAAATTCTCTCTACTTTGCTTCAGTGATTACTGGGTTTTGCTTTGGAGCTCAGTGGCCATTAGTGTTTGCAATCA TATCAGAAATTTTTGGTTTGAAATACTACTCCACTTTGTACAATTTTGGAGGTGCGGCAAGCCCTGTTGGATCTTACATA CTGAATGTGAGAGTGGCAGGGTATTTGTATGATAAAGAGGCTTTGAAGCAATTGGAGGCAAAGGGTCTCACTAGAGAAGC AGGGAAGGATCTAATTTGTGTAGGAGTTGAATGTTACAGGATGGCTTTTATTATCATCTCTGCATCAACTCTGATTGGTT GTTTTGTTTCTTTTATTTTGGTTCTGAGGACTAGGAAATTTTATAAAAGTGATATCTACAGAAAGTTCCGGGAAGAAATT GAAGCAGCAGAGGCTGAGATGGGTGCTGCCAGAACTGAATTTGTTCTTCCTGAAACAGATGGCAAGGCAACCTTAAGCAC CACTGAGGGTACTTCCAGAACCACAACAAGAGAGTCTTAGGAATCAGTATAAGGCAATAGAAAGTGAACTGTGTTTAAGG CAAGTAATGCCTATAGAAAATGGAGGATGTTTTCTTGGACATAATTAAATTAGTTAGTGTAAAATTATTGTTGGACAAAT ATGTTTTTCTTCCAATAAAATCCAACATCTTTTTGGCTTTAGTCCTTTAATATTATAACGTGTGTTCTGTTTCTAACATA ATATGATTTTAGCCCTTGATATGTGTATTTGAAATACTACTCCACTTTGTACAATTGTCATGTGTATTTGCTAAATATTT CTGATTCATAAGCCACACAAGTGTAACCACATATCTCATTCATCTCAATTTTGGATTAAATTTTATCTGCACTCCATTAT AAGTGAAAATAAGTGAAGAGAAGAAAGAGATAGGAAAAAAAAAG
CDS sequence (LotjaGi1g1v0686600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACAGCAGAATTCAACAGTGGTGGTGGCCATGGTGGCTGGAGAGGAACAAAGACCTTCATCTACCAAGTCCTCAC CGGCCGTTGGTTCATGCTATTTGCCTCTAAACTAATCATGGCTGTTGCTGGTGCAACCTACATGTTTGGCCTATACTCCA ACGTTGTCAAATCCTCTTTAGGCTATGATCAATCCACTCTCAACCTTCTCAGCTTCTTCAAAGACCTTGGTGCCAATGTT GGTGTCATCTCAGGGCTAATCAACGAGGTCTCGCCGCCATGGGTGGTGCTCTCAATTGGAGTCACCATGAACTTCTTTGG CTACTTCATGATATGGCTTGCTGTCACAGGCCACATTCCCAAACCCCAAGTTTGGCACATGTGTCTCTACATTTGCCTAG GTGCAAATTCACAAACTTTTGCAAATACTGGCGCTTTGGTCACTTGTGTCAAGAACTTCCCTGGAAGTAGAGGAAGTGTT TTAGGCCTTCTCAAAGGTTATGTTGGGCTAAGTGGTGCTATAATCACTCAGCTTTACCATGCTCTCTATGGTGACAATTC AGAATCTCTCATCTTGCTCATTGCTTGGCTCCCTGCAGCTGTTTCCTCTGTTTTTCTTCCAACAATTAGGATGTTGAAGT TGAGCACTTCACAACAACAACAAAAGGAGCACAAAGTTTTCTACAATTTTCTTTACATGTCACTTGGCTTTGCAGGGTTT CTCATGGTCTTGATCATTGTTCAAAAGAATTGGAGTTTTTCAAGGATTGAGTACATTGCTGATGGAATTGGAGTTATTTT TCTGCTTCTTCTCCCACTTGCTCTGGTTTTCAGAGAGGAACTCAAGCTCTTGAAGGACAACACTCAATCTTTCTCTGACC CATCTCAATTAAAAGTAGTCACTGAAGTTCCAACTCCAAATATGGCACCACCACAGGTTGTGGTACCATCTTCTACCAAC AACACAAGCTCACACAAGAAAGGCTCTTGTTGGAGAACCATTTTCAAACCCCCAAACAGGGGAGAAGACTACACCATTCT GCAAGCCCTGTTCAGCATTGACATGTTGATTCTCTTCATAGCAACAACATTTGGTGTTGGTGGAACACTAACTGCAATTG ACAACCTAGGACAAATTGGGAACTCATTAGGATACCCAAGTAAAAGCATAACCACCTTTGTATCCCTAGTGAGCATATGG AACTATCTTGGAAGAGTGGTTTCTGGCTATCTCTCTGAAATCTTCTTAACAAAATACAAGTTCCCTCGTCCTTACATGCT AACTCTAGTTATGCTTCTATCTTGTGTTGGTCATGTTCTAATAGCTCTTGGTTTACCAAATTCTCTCTACTTTGCTTCAG TGATTACTGGGTTTTGCTTTGGAGCTCAGTGGCCATTAGTGTTTGCAATCATATCAGAAATTTTTGGTTTGAAATACTAC TCCACTTTGTACAATTTTGGAGGTGCGGCAAGCCCTGTTGGATCTTACATACTGAATGTGAGAGTGGCAGGGTATTTGTA TGATAAAGAGGCTTTGAAGCAATTGGAGGCAAAGGGTCTCACTAGAGAAGCAGGGAAGGATCTAATTTGTGTAGGAGTTG AATGTTACAGGATGGCTTTTATTATCATCTCTGCATCAACTCTGATTGGTTGTTTTGTTTCTTTTATTTTGGTTCTGAGG ACTAGGAAATTTTATAAAAGTGATATCTACAGAAAGTTCCGGGAAGAAATTGAAGCAGCAGAGGCTGAGATGGGTGCTGC CAGAACTGAATTTGTTCTTCCTGAAACAGATGGCAAGGCAACCTTAAGCACCACTGAGGGTACTTCCAGAACCACAACAA GAGAGTCTTAG
Protein sequence (LotjaGi1g1v0686600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTAEFNSGGGHGGWRGTKTFIYQVLTGRWFMLFASKLIMAVAGATYMFGLYSNVVKSSLGYDQSTLNLLSFFKDLGANV GVISGLINEVSPPWVVLSIGVTMNFFGYFMIWLAVTGHIPKPQVWHMCLYICLGANSQTFANTGALVTCVKNFPGSRGSV LGLLKGYVGLSGAIITQLYHALYGDNSESLILLIAWLPAAVSSVFLPTIRMLKLSTSQQQQKEHKVFYNFLYMSLGFAGF LMVLIIVQKNWSFSRIEYIADGIGVIFLLLLPLALVFREELKLLKDNTQSFSDPSQLKVVTEVPTPNMAPPQVVVPSSTN NTSSHKKGSCWRTIFKPPNRGEDYTILQALFSIDMLILFIATTFGVGGTLTAIDNLGQIGNSLGYPSKSITTFVSLVSIW NYLGRVVSGYLSEIFLTKYKFPRPYMLTLVMLLSCVGHVLIALGLPNSLYFASVITGFCFGAQWPLVFAIISEIFGLKYY STLYNFGGAASPVGSYILNVRVAGYLYDKEALKQLEAKGLTREAGKDLICVGVECYRMAFIIISASTLIGCFVSFILVLR TRKFYKSDIYRKFREEIEAAEAEMGAARTEFVLPETDGKATLSTTEGTSRTTTRES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 18 | 582 | 565 | 5.4E-289 | – | |
| PANTHER | 18 | 582 | 565 | 5.4E-289 | – | |
| CDD | 28 | 551 | 524 | 5.99312E-113 | – | |
| Pfam | 29 | 276 | 248 | 1.9E-91 | ||
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 30 | 55 | 26 | - | – | |
| SUPERFAMILY | 32 | 567 | 536 | 1.57E-24 | ||
| Phobius | 56 | 66 | 11 | - | – | |
| Phobius | 67 | 87 | 21 | - | – | |
| Phobius | 88 | 92 | 5 | - | – | |
| Phobius | 93 | 115 | 23 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 116 | 159 | 44 | - | – | |
| Phobius | 160 | 183 | 24 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 184 | 188 | 5 | - | – | |
| Phobius | 189 | 206 | 18 | - | – | |
| TMHMM | 192 | 214 | 23 | - | – | |
| Phobius | 207 | 225 | 19 | - | – | |
| Phobius | 226 | 246 | 21 | - | – | |
| TMHMM | 226 | 248 | 23 | - | – | |
| Phobius | 247 | 257 | 11 | - | – | |
| Phobius | 258 | 277 | 20 | - | – | |
| TMHMM | 258 | 277 | 20 | - | – | |
| Phobius | 278 | 348 | 71 | - | – | |
| Gene3D | 344 | 566 | 223 | 6.0E-14 | – | |
| Phobius | 349 | 373 | 25 | - | – | |
| TMHMM | 350 | 372 | 23 | - | – | |
| Phobius | 374 | 384 | 11 | - | – | |
| TMHMM | 382 | 404 | 23 | - | – | |
| Phobius | 385 | 403 | 19 | - | – | |
| Phobius | 404 | 423 | 20 | - | – | |
| Phobius | 424 | 443 | 20 | - | – | |
| TMHMM | 425 | 444 | 20 | - | – | |
| Phobius | 444 | 448 | 5 | - | – | |
| TMHMM | 449 | 471 | 23 | - | – | |
| Phobius | 449 | 471 | 23 | - | – | |
| Phobius | 472 | 482 | 11 | - | – | |
| Phobius | 483 | 507 | 25 | - | – | |
| TMHMM | 483 | 505 | 23 | - | – | |
| Phobius | 508 | 537 | 30 | - | – | |
| TMHMM | 537 | 559 | 23 | - | – | |
| Phobius | 538 | 559 | 22 | - | – | |
| Phobius | 560 | 616 | 57 | - | – | |
| Coils | 570 | 590 | 21 | - | – | |
| MobiDBLite | 596 | 616 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0686600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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