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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0689200 |
| Transcript ID | LotjaGi1g1v0689200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase sigma factor; TAIR: AT2G36990.1 RNApolymerase sigma-subunit F; Swiss-Prot: sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic; TrEMBL-Plants: tr|A0A151TIX7|A0A151TIX7_CAJCA RNA polymerase sigma factor; Found in the gene: LotjaGi1g1v0689200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125689612..125694637) extracted from Lotus japonicus Gifu genome v1.2.
AGATAACAGATCTTTTTCTCTGAAGCTTGAAATTGAGGTGTGGAAGAGAAGAGAACAGAGTATACAGAACCAGAAACACA AACCAAAAAGCCTTGTTCCTTTTGCTCTCTAACATCTATCTAATCATTATCTATCCTTAAATCCCTCCCTCGTTGTTGGA AACTGGAACCTGTTGAACTCCTTGTCGCGAAACTGATGAACGCCGCTAAGAGCATGTTTTCTTCTTCATCTCCACCGTTT TCTTCACCTACAGGTACCCTTTTTGCAATTTTTAGTTTTTTGTTCAAATTTCATTTGTTCTAGTGAAAAAATCATGTAAT ATGTAGCTGTTGATTTCTCTGAGTTGAAAAGTTGTTACCTTTTGCAGTTATGATGCTTCATGAACAAGCTGTTCCTGCTG TTTCTTCTTGGCCTTCTGGTATTGCAGCACAGCATTTTCCTACTTCAGTTCTTTTGCAAGAGCAGCGTGATGAGTATAAG CCTCTACTTCACATCAATAAGGAAGATAAGACACCCCAGGTTCTAATTTTGTTCATATACCAACCAATTTCATCAAAGTT GGCTTCTTTAAATTCACATGGAGTGTGTTTGAGTTAACAACTTAATTAAGTACTTATGACCATAAGCTCGTATCGCATAA ACACTTATTCATAAGCTAATTTGAAAAATGTATTGAAATAAGCTGAAATAGGTTATAGGTAAGCATAATCTCTTATTCAT AAGCTAATACGAACAGATTATGAAAATAAGCTAAAAAAAAGCTTATAGGTAGAGGTAGACCGTAAGTTGTTTACATAAGC TCTCCCAACTACTTGCATAAGCGCTTATGCTATCATATAAGCTAAAATAAGCTCTTCCAAATGGGGCCATAATCAAATTG AATCTTTCTTTTTTTCATTTTGATGTGACTAACTTTTAGTTTTGTATTATGTAATGGTCCCATTGTTTGTAAATGTTGTC AATTTGTCTCCCCTTTGTTTTACTGAAGGCGACTTCGAGTATGAGGCCGATGGATGTGGCCTTAGTTCAAGAGAAGAACA ACACTGGCAATGCTGATGAGTTAGTGCACAACTTTATGCAGCAGTTGCATCTCCGGTGTCATTTGCAGAACTTGTAAGAT AAATTGAATTCACACTTTTTTGTGTTCATTTTTCCTGTTGTAATTGCTAATTTAAATATTTGCACATTCAAAGTTGTGTC CTTATTGGGTGCATGTACTGTCCATTGTAGATTGAGTTCTTCGCTAACCAGGGAAATTGCTGCTTCTTCGACTCTGCAAT CTATTACTGATGATTCAGAGCGGTCTCCGGATGGCCTTCAATGGAATGCAGTTTCTCTTGCTAAGCAAGCTTTGTCAGCC TCAAAACAAGCAGCTGCAGTAGCTGAGGAGTCGAAACTTATTGAAGCTGATGATGATGATAATGATGATTCACTTCCTTT CGGGTTAGTTCTGTTGTCGTGGTCGACTTTGACATCCTTGATTTCTTTTTGTGTGTTTATAGGATGATTTGCATTGAGAA TAATACCAAAATGTACCATTCAGTCTGGCCTCCACATGTTTCCCCGACTCTTCAGTTAGAAGGAATAAAATTGTGAGGTC AACACGGCTTAAAGAAAGACGATCTAAACAGAGAAAAGTATCAAAATCGAGTGTTCTTGACGATGAAAGTTACCTTACAA GAAAGTCAGATGTTCAAGGAAGGTTACGTGTAGAGAAGAAATTAAAAGAAGGGCTTGATCAAAATGATCCCCTGCGCATG TTCTTATGGGGTCCTGAAACTAAGAAACTTTTGACCTTTGAAGAAGAGTCTCAATTGATTTCTCAGATACAGGTGCGACT CAGAATTCCAGATTTCTTTAAATGTGTAGTATGCTCTATTAAGGATCTTCTTTTGCCATGATGTGGAATTTGTAACAGAA TTTGTTCAGATTGGAAGAAGTGAAGATCAGGCTTCAATCTCAGTTTGGGCGTGAACCAACTATGGCTGAATGGGCAGATG GTGTGGGTCTTAGCTGTTATGCCCTGCAGACACAGCTTCGTAGTGGTACAAGAAGCAAGGAAAAGCTGATTCATGCCAAT TTACGCATGGTAGTTCATGTTGCTAAAAATTATCTGGGGCGTGGTCTCAGCTTTCAGGACTTATTGCAGGTAGCCTCTGA GTAATTAGAAGTTTCCATTCTCCACTACCAAAGTCTATTTATACTTCCATACTCTTGCATAGTAATTACTAGTACTTAGT TTGCTATGTATGTGTTCTACTTCTATATTATCTCTGAACAAATAAAAACCCTAAATAAATATTTGGCTGAAGCTGGAACT GGAAATGGGGATGGGGGGAAAGCCTTCAGTTAAAGGCTCTCCATTATTTATTTTGAATATTGTTGCAATTATTATCTTAA TTAGCAGCTGAATCTTTTATGCTCCTTTTCTGGTGCTATTATAGGAGGGAAGTATGGGTCTCATGAAGAGCGTTGAAAAG TTTAAACCCCAAGCTGGTTGCCGGTTCGCTTCTTACGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCT ACATTCTAGGACGATCCGTCTTCCGGTAAAAACAGTTTGTTTATTTCTTATAATATATGTGGCTTAATATAAGCTCTCTC CTTTTGAAGTGTCAGTACGCATGAAACTGTTGAATATTGATATATTAACATAGAATAAAATGGCTTGACCATTATATTAA ATTTTCTTACTAATATGTTATTTGTAAAGCAAGCATCATTTCTATTTCCATAACATTGCACTAATGTTTTATCTTCAGGA GAATGTTTACACCCTTTTGGGCAAGCTCATCGAAGCAAAGAAATTCTACAATAGAGAAGGAAATGTTCACCCCACAAAAG AAGAATTAGCAAGAAAAATAGGAGTTACAGTAGACAAGTTGGAAATATTGCTATCTGCTGCCAGAATTCCACTTTCGATG CAGCAAACGGTGTGGACAGACCAGGATACAACTTACCAGGTAGGGCTTCAAGTAAATATGATTTCCCCTTCTGCAATACT AGATCTGTAAATTGAGAACAATGATAAGGAAAGCTCCATATTAATACGTAGCTTGATTAGAGCAGCTGAAGGTTATTACC TCCCCATTTTAAATTGCATCTGTGTCCGTGTCTTTTGCTTGTCCTGATAATTGTTAAAACAAATTGGTTGAAATCTAATT GCAATGAAAGGCAAAATTGAATTGATTGCAATAATCATCTCTCATTTGCATAACTATTACATTGTGGTTTTAAATTGTGT GAACGAGATGATAGATCATATTCCAACAATGTGTTTTGGGATAAGCCTTGGAAGCATAGCATCCTACCTATGGATATCAA ACAAACTGAGTGTCCTTGTTAGATCAAACCAGGGGATTTGGTTCGGTTTCTTTACTGATTGTTTTGGTTTAGGTTTATCA TAGTTATACTTGTTAGTAGGATTTGGAACACCAATGAACCACTGGCTTGTAAACTCTGAAACTGTCTGGTCTGAGGTTGA TCTTCTGGCCAACCTAGACTAGACCATGAATACCCCTACTGAATATGCCAGCCGTGGGGATGGACTCCTCAAGTTGCTTA ACGATTCAATTCATTAAGCATGTTAGATTCACCCCTCTATGGGTGTGGTCAAGATAGACTGTTAGGATCCAACTTCCAAA GAGAATGGGCCTGGGGCGTTTGAGCCTGAGACCCTGAGTAACCCGCGGCTAGTTTATCTGTTACGGTTAGTGGGTTTATT GGCTTGTGTGGCTGAGTCTATCTTTAGTCTATTTTATTATTTGATTTGAGCCTATGTTGGGCCAGTGTCATTTGCTTAGG AGGGTTAGTTTATTATAAATAGGAGTTTCTTCATTAGGTTAAGATTAGGATTTGATTATTGAGTTTGTGAAATGGTTTTA AACTTGGAAAATGGAAGGGGTTGTCCCTTGTTTAAAGACTTACCTTCTTTTCAACTAATAATATCAGTTTTATTTCATTT AATTACTATTCTGCCCTTGTTCCTTTGGGTGTTTGGCTGTTAGGGTTTTCCAATCCTAACATAGACCCTCTGCTTTTTAT AGGCAACATGAGATTACATCCTACATTTCTATTATAATTGCAGGAGATTACTGCAGACACCGCAATTGAGACCCCAGATG TGTATGTTGCAAAACAGCTAATGAGGCGTCACGCGCGCAACCTTCTACATACCTTAAACCCAAGAGAAAGGAGGATAATC AGGCTAAGATTTGGCATTGAAGATGGCTACGAGAAATCTTTGTCAGAAATTGGCACTGTATTTGGTTTGTCTAAGGAGAG GGTCCGACAGTTGGAGAGCCGAGCATTGGATAAGCTCAAGCAGTGCCTTGCTAGTCATGGACTTGATGCATATGCAAACT TGCTTGTATAGTTGTATAGATAAGTAGACACCAAAGTTATGGAAGGCTGTTACTTTTATCCTAGTTAAGTACAAAAAAGG AGTAACTATCCAGCTTTTGACAACCCCCCATGACAATTGAGGATGAATGGGGTGATTATAGCGTGTTTATTTCATATTTT CTTTCGTTGGAATCAATTATAAAATTAAGAAGCTACTCACAAAAGCTTCTTTCTAGAATTGATTCCGACTCCAATAGCTT GAGTTATGGAAGAAAAAGAACTGATTAGAAAATCTGGACAGAAATTGAAAATGAAAACGAACAAGGAAATACAATAAGAA GCTGAAAACAAAAACCAAAGATATGAACATGGATAGGAAAGCGCCACAATTCTAGGATTGATAAGCCAATATAAACGTCA CAAGGATCAACAACCTTGAGGTCAGTTTTCTCAAGAGCTATAGAAACAAAGGTTCAAAAGCACAAGGGCTCAATTTCGAA ATCTCCAAAATCTTAATCTCTTTTGTAAGGGCTCAAGTGTCTTATATTTTTGCAACACTCAAGTTTTCTTAGACCTAAAC CCTTACAATTATGTCCAAAACAGCATACTAATTCAGTCTTCTCACAAAAACAAAACAAAAAAGCGC
CDS sequence (LotjaGi1g1v0689200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGCCGCTAAGAGCATGTTTTCTTCTTCATCTCCACCGTTTTCTTCACCTACAGTTATGATGCTTCATGAACAAGC TGTTCCTGCTGTTTCTTCTTGGCCTTCTGGTATTGCAGCACAGCATTTTCCTACTTCAGTTCTTTTGCAAGAGCAGCGTG ATGAGTATAAGCCTCTACTTCACATCAATAAGGAAGATAAGACACCCCAGGCGACTTCGAGTATGAGGCCGATGGATGTG GCCTTAGTTCAAGAGAAGAACAACACTGGCAATGCTGATGAGTTAGTGCACAACTTTATGCAGCAGTTGCATCTCCGGTG TCATTTGCAGAACTTATTGAGTTCTTCGCTAACCAGGGAAATTGCTGCTTCTTCGACTCTGCAATCTATTACTGATGATT CAGAGCGGTCTCCGGATGGCCTTCAATGGAATGCAGTTTCTCTTGCTAAGCAAGCTTTGTCAGCCTCAAAACAAGCAGCT GCAGTAGCTGAGGAGTCGAAACTTATTGAAGCTGATGATGATGATAATGATGATTCACTTCCTTTCGGTCTGGCCTCCAC ATGTTTCCCCGACTCTTCAGTTAGAAGGAATAAAATTGTGAGGTCAACACGGCTTAAAGAAAGACGATCTAAACAGAGAA AAGTATCAAAATCGAGTGTTCTTGACGATGAAAGTTACCTTACAAGAAAGTCAGATGTTCAAGGAAGGTTACGTGTAGAG AAGAAATTAAAAGAAGGGCTTGATCAAAATGATCCCCTGCGCATGTTCTTATGGGGTCCTGAAACTAAGAAACTTTTGAC CTTTGAAGAAGAGTCTCAATTGATTTCTCAGATACAGAATTTGTTCAGATTGGAAGAAGTGAAGATCAGGCTTCAATCTC AGTTTGGGCGTGAACCAACTATGGCTGAATGGGCAGATGGTGTGGGTCTTAGCTGTTATGCCCTGCAGACACAGCTTCGT AGTGGTACAAGAAGCAAGGAAAAGCTGATTCATGCCAATTTACGCATGGTAGTTCATGTTGCTAAAAATTATCTGGGGCG TGGTCTCAGCTTTCAGGACTTATTGCAGGAGGGAAGTATGGGTCTCATGAAGAGCGTTGAAAAGTTTAAACCCCAAGCTG GTTGCCGGTTCGCTTCTTACGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTACATTCTAGGACGATC CGTCTTCCGGAGAATGTTTACACCCTTTTGGGCAAGCTCATCGAAGCAAAGAAATTCTACAATAGAGAAGGAAATGTTCA CCCCACAAAAGAAGAATTAGCAAGAAAAATAGGAGTTACAGTAGACAAGTTGGAAATATTGCTATCTGCTGCCAGAATTC CACTTTCGATGCAGCAAACGGTGTGGACAGACCAGGATACAACTTACCAGGAGATTACTGCAGACACCGCAATTGAGACC CCAGATGTGTATGTTGCAAAACAGCTAATGAGGCGTCACGCGCGCAACCTTCTACATACCTTAAACCCAAGAGAAAGGAG GATAATCAGGCTAAGATTTGGCATTGAAGATGGCTACGAGAAATCTTTGTCAGAAATTGGCACTGTATTTGGTTTGTCTA AGGAGAGGGTCCGACAGTTGGAGAGCCGAGCATTGGATAAGCTCAAGCAGTGCCTTGCTAGTCATGGACTTGATGCATAT GCAAACTTGCTTGTATAG
Protein sequence (LotjaGi1g1v0689200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAAKSMFSSSSPPFSSPTVMMLHEQAVPAVSSWPSGIAAQHFPTSVLLQEQRDEYKPLLHINKEDKTPQATSSMRPMDV ALVQEKNNTGNADELVHNFMQQLHLRCHLQNLLSSSLTREIAASSTLQSITDDSERSPDGLQWNAVSLAKQALSASKQAA AVAEESKLIEADDDDNDDSLPFGLASTCFPDSSVRRNKIVRSTRLKERRSKQRKVSKSSVLDDESYLTRKSDVQGRLRVE KKLKEGLDQNDPLRMFLWGPETKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLR SGTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWIRQTIRRALFLHSRTI RLPENVYTLLGKLIEAKKFYNREGNVHPTKEELARKIGVTVDKLEILLSAARIPLSMQQTVWTDQDTTYQEITADTAIET PDVYVAKQLMRRHARNLLHTLNPRERRIIRLRFGIEDGYEKSLSEIGTVFGLSKERVRQLESRALDKLKQCLASHGLDAY ANLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 565 | 565 | 5.0E-150 | ||
| PANTHER | 31 | 564 | 534 | 5.2E-252 | – | |
| PANTHER | 31 | 564 | 534 | 5.2E-252 | – | |
| SUPERFAMILY | 249 | 399 | 151 | 2.35E-43 | ||
| Gene3D | 300 | 401 | 102 | 7.8E-37 | – | |
| TIGRFAM | 327 | 552 | 226 | 1.2E-34 | ||
| Pfam | 329 | 393 | 65 | 3.5E-18 | ||
| PRINTS | 353 | 366 | 14 | 9.3E-24 | ||
| ProSitePatterns | 353 | 366 | 14 | - | ||
| PRINTS | 377 | 385 | 9 | 9.3E-24 | ||
| Gene3D | 402 | 478 | 77 | 1.0E-8 | ||
| SUPERFAMILY | 402 | 475 | 74 | 2.22E-8 | ||
| Pfam | 410 | 482 | 73 | 7.3E-13 | ||
| SUPERFAMILY | 462 | 560 | 99 | 7.29E-25 | ||
| Gene3D | 485 | 564 | 80 | 3.2E-24 | ||
| CDD | 491 | 549 | 59 | 6.05602E-13 | – | |
| Pfam | 497 | 550 | 54 | 2.8E-19 | ||
| PRINTS | 501 | 513 | 13 | 9.3E-24 | ||
| ProSitePatterns | 522 | 548 | 27 | - | ||
| PRINTS | 522 | 537 | 16 | 9.3E-24 | ||
| PRINTS | 537 | 548 | 12 | 9.3E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0689200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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