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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0691000 |
| Transcript ID | LotjaGi1g1v0691000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT4G30080.1 auxin response factor 16; Swiss-Prot: sp|Q653H7|ARFR_ORYSJ Auxin response factor 18; TrEMBL-Plants: tr|A0A061ET58|A0A061ET58_THECC Auxin response factor; Found in the gene: LotjaGi1g1v0691000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125917493..125922497) extracted from Lotus japonicus Gifu genome v1.2.
GGCCTTTTCTGTTATTTTTCTTGTGTGTGTTGTTTGGAGTCTTGCATTGCATGAGCTAAAACCCCTTTTCTCTTCTCTGC TCTGCTTGCTTTGCCCCTGTAACAGTGTGTGGGTCTCTGTCTCTGGCGTTTTCTCCGCGCATCCGTGTCGTGTCGGCCAT CCAATTCATCACTCTAGAATCCCAGCAAAATTCACTCACAAAAAAGTATATTCTGTTTCACAATTTCAGCTACAATTATG GAGCTTCAGATTTTGTTGCAGAGATTATTGAGTAGTCAGTTACACAATTTTTTATTTTTTTAAAATTGTTTCTGGTTTTG ATTTTTCATCTTTCTTCCTCTAATCTTGTGCCCCAGACAGGACAGGGACTCAGTCTGAAAACTCTTGTTTTTGCCTCTAA CACTGTTTTCAATTTTATTTTTCTGAAATGAATTCAATCCCAATTTTTTTCAACCTTTAATTATCTGGGTATTTGAGAAA AAGTGAAAAACCAGTTTTAAATAAAAGGCTGATACTAGTATGTCACTGAAATTAAGACCATGGAATTCTGAGTTGTGAGC CTGTGATGCTTTTTCAGGTAAGAATTTCATAAAATGTTTCTTTTGGGTCAGTTAAGTGCTATCTATAGTTTGTGAAAATT AACATGATTTCAGGAATTTGCAGTGAAAAAAAGTTGCTATATTTAGCTATAATTGAGATGATGGTGAGTACAGAGTCAAA GGAGAAATTGAAAGAGGTGGTGGAGAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCTGGAGGGATGGTGCAAATGC CACAGGTGAATGCTAAGGTCTTCTACTTCCCTCAGGGTCACGCAGAACATGCATGTGAGCCTGTGGATTTCAGAAGTTAC AACAAACTTCCATCTTGCATTCAATGCAGAGTCACAGGTATCAAATACATGGCTGATCCTGAAACAGATGAGGTTTGTGC AAGAATTAGGCTTGTTCCTCTTCACAGCAATGAGGTTGATTTTGATGATGATGGTGTTGGAGGGGGAGTCAATGAAACCA AGGATAACAAACCCCCTTCTTTTGCAAAAACATTGACACAATCTGATGCCAACAATGGCGGTGGTTTTTCTGTTCCTAGG TATTGTGCAGAGACAATTTTCCCTCGTTTGGACTATTCAGCTGATCCTCCTGTTCAGAACATCTTGGCTAAAGATGTTCA TGGTGAGATATGGAAATTCAGACACATTTATAGGGGCACGCCGAGGCGGCATCTTTTGACTACAGGGTGGAGCACTTTTG TCAATCACAAGAAGCTTATTGCAGGGGACTCAATTGTGTTTCTGAGAGCAGAGAATGGAGATCTTTGTGTTGGAATTCGG CGCGCTAAAAGGGGTGGTAGTGGTGGTGGACCGGATCCTTCATCAGGCTGGAATTCCGCTGGTGGAACCGGATTTCACCC TTTATCTTATGCAGGATTTGCAGACAGTAACCAACTCCTGAGAAACGGTCATGGTAATGGCAATGGATTGAGCCCAACGA GTGCGAGTTTGATGTGTAGGGGGAAGGTGAGGGCACAAGCAGTGATTGAGGCTGCTACACTTGCTGCTAATATGCAGCCA TTTGAGGTGGTTTACTATCCTCGGGCAAGTACTCCGGAGTTTTGTGTTAAGGCCTCTTTGGTTAGAGCAGCAATGCAGGT TAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACCGAGGACTCCTCGCGGATTAGTTGGTTTATGGGAACTG TGTCCTCTGTTCAGGTTGCTGATCCAAGATGGTCAGACTCTCCTTGGAGACTTCTACAGGTAATGTACAATCATATTTAT TGATGAATCATATTTTTATTCCGCAGAATCAATTCTAACACCTAGAAGTTACTCAAGTCCCAGAATTGGTTCAGGTTTCG AAATCAATTTAGAAGGATTTCTAAACATTCACTTAATAAGTTTGAACTAGACCAGAACATAGTTACATTGTACTAAGTAA TGGCTAGATGTATTCTTGGTACTTCTGTTAACTTTTTAAGACTATTTAACTTGCTTAGGCAGCGTCCCTGTTAAGGGTAT CATTCATTTTGTATCCGTGAGGACTTTCAAACATTTCACTTCAATTCATTTAGTAAGCTGATATGAACATTTGTTTACAC ATGAACAATTAAACTCAAAAACAATGAAACTTTGCTGCTGCTGATAAATTTCTAAAGGAGAATTTGGTTGCTGCAAATTT CACTATGTTTTACTTTACATATTACTTATCAACGAGCATCTAATTTGTAATTGTATTATTCTGGACATTTAGTACATCAA AAACCATGTTATATGCCCCCTCCTTTCATATGAAGGTTTCTTGAAGTGGGACTCAATTTTCTTTCAACTCGAATAATCTT TCTGATGTCCTAATTTCAGGTTGCATGGGATGAACCAGATTTACTTCAAAATGTTAAAAGGGTGAGCCCTTGGCTGGTTG AAATCGTGTCGAACATGCCTAACATCCACCTTTCCCCTTTCACGCCACCGCGAAAGAAAATGAGATTGCCTCAACACCCA GATTTCCCCCTCGATGGCCAGATTTCAGTGCCAACATTTCCCGGCAACCACCTTCTAGGTCCCGGAACTTCCTTCGATCG TTTATACGAAAATAGTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTATATCCTTATCAGATCTCCACCTCA GTAAACTGCAGTCAGGTCTATTTTCATCTAATTTCACTCAATTTGATCATATTCATCATGCTGCTGCTGCTACACCAATG AGGGTCCCCAACATTAACCCAACATTGCAAAAACCCAGCACTAGTGAAAATATCTCTTACTTACTATCCATGACAACAAC AACAAACTCTACTCAGTCTAAGAAACCTGATGATGATGATGTGAAGCCGCCTCGACTTGTGCTTTTTGGCCAAACGATTC TCACAGAGCAACAAATCTCTCTGAGTTCATCCGCTGACAACACAGTTTCCCCGGTTCTTACTGGAAACAACAGTTCATCG GATGGAAATGCAGATAAAAAGACTAATTTTTCTAATGGTTTTGGATCTGCTCTTGATCGGCAAGATAGTTTGCCTAGTTT GGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGAAGGACCATGAACCTCACATTACTCAATTCTTATG ATGAACTGTACAAAAAACTAGCTGATATGTTTGGGATACAAAAATCTGGGGTGTTGAGTCATGTGCTCTACTGTGATAAA ACAGGAGCAGTTAAACACATTGGAGATGAAGCATTCAGGTACATATCAAAATCATTATATGATCTTTTGTATTGCAAATT CATGCAGCTAGCTTGACATGTTTATCTATTTGATGCTATTGTAGTGACTTCACCAAAACAGCTAGGAGGTTGACCATTCT AATGGATTCCAGCAGCGACAATGGGAGAGTTTAGTGAGAGAGAGAGAGGAAGATAAATAAACTATCTTTTCAATTGTACA GCTGGTTGGTCAATTTCTCAATTGCCATTTTGACCCCTCACCCTTATTCAAGCAATTGATAGCATGTTCGAATTCACATT CAGGTCTTCCCGAATCAATTCTATTACCACAAAAGCTGCTAGGAACAGCTTCTCTCATGATCAATTTTTCCAACGTGAAA AATTACCGCGTCTTCAAACATGCACTGATTGGAAGGAGATAGTCTGATCTATTTTGGATATTAAACTGGACTAATGTTTC TCTTGTATCTCCAAGGGACATTTGGATTTGAATTTTTTTCATGAGTTTGGATTTCCGTTAAACTAACTCATATCAACGTT TGAGTCTACGTGACAAAATTTTGCTTGTCCGCCGATGCATTGAGATGTGTTTTTTCTGCTAGAAACTAGAGGGGGACTTC AAGTGATGGTTGCTCATGTTTTCCTTTTCTTTCTGATTACACAATTTGCTACCTTGAGTTTATTCTTTTTTAAATAATTC TGCTAGGTGTGGTGGAGAAAGGGTTAGATCCTATATCCCTATAAATATGATTGGTTTGTAGGAGTGGCCTCTGTATTTAG ACTCTTTGACAATGGTTTTGTAATATAAAAGTAGTAGGACCTAGTGTTATTGAGACCAATTAGGGGTGTCATTTTCCTTG ATTTCTTGTGGCTTGGGTACACATACTAGTTAGATCGCGTGCAATGAGCGTCAATTTATTTGCAATCACTCTTCCATCTT GCATTAAATGCATTCATCTATGGCTGAAATTTTATATGGTGTCAATTACTATAAAATTGGCTTATGTTTCCCAAAATATA ATTATAGCAGGGTTGGTTCCAACTTCAAGCAAGCTCAGTCCCTTATTTTTTTAGTTGGTTGTTATATGTATTTTTAATTT CAACATTATTTTATAGGTAAGGAAATTGGTACATAGTTGCATTATTCTTTGTATGGATTTGGACTAGCAATTCAATTCCA AATGTTGTATGACATTAGCAATGAGACATTGACAACAAGCCAAATAAAAGTGTGAATACGTGCCTTTTCTCTGCTGAGAC ACATTATGTTTTTCTTGAGGTAGGTGGATGCATTTTTTTATCTTCCAAATAATAAAACTTTCTTGCTTGACTTGGAAAAT TGAAGAGTGGAAGAAAGAAAAAAGAGAAACCAAGATTAAGTTTGTTGAAAGTCTAATCAGCTGATAGAAACATATATATA AAGATAGAGTTGACTTAATTGGCAGTATAGTGTGGTGTAAGACTGTTTCACACACGGCAACAGATTCACAAAGATCATGA GCTTGAATCTCCATTTCCCGGCAAGGAATAATAAGGTACCATGTGGAAGAAGTAACATCAAAGGAGGAAGAAAAAGAGAA GATGTACTTGTGCAACATTTTTTTTAATAAAGTTTAATTGGTTCTTCCGGATCATGTGATGAGTCCTCCAAATATATATA TTTCTTTAGTAATTTTAGTCTCTAAATTTTTGCAATAATTAAGCC
CDS sequence (LotjaGi1g1v0691000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTGAGTACAGAGTCAAAGGAGAAATTGAAAGAGGTGGTGGAGAGGTGTTTAGATCCTCAGCTATGGCATGCTTG TGCTGGAGGGATGGTGCAAATGCCACAGGTGAATGCTAAGGTCTTCTACTTCCCTCAGGGTCACGCAGAACATGCATGTG AGCCTGTGGATTTCAGAAGTTACAACAAACTTCCATCTTGCATTCAATGCAGAGTCACAGGTATCAAATACATGGCTGAT CCTGAAACAGATGAGGTTTGTGCAAGAATTAGGCTTGTTCCTCTTCACAGCAATGAGGTTGATTTTGATGATGATGGTGT TGGAGGGGGAGTCAATGAAACCAAGGATAACAAACCCCCTTCTTTTGCAAAAACATTGACACAATCTGATGCCAACAATG GCGGTGGTTTTTCTGTTCCTAGGTATTGTGCAGAGACAATTTTCCCTCGTTTGGACTATTCAGCTGATCCTCCTGTTCAG AACATCTTGGCTAAAGATGTTCATGGTGAGATATGGAAATTCAGACACATTTATAGGGGCACGCCGAGGCGGCATCTTTT GACTACAGGGTGGAGCACTTTTGTCAATCACAAGAAGCTTATTGCAGGGGACTCAATTGTGTTTCTGAGAGCAGAGAATG GAGATCTTTGTGTTGGAATTCGGCGCGCTAAAAGGGGTGGTAGTGGTGGTGGACCGGATCCTTCATCAGGCTGGAATTCC GCTGGTGGAACCGGATTTCACCCTTTATCTTATGCAGGATTTGCAGACAGTAACCAACTCCTGAGAAACGGTCATGGTAA TGGCAATGGATTGAGCCCAACGAGTGCGAGTTTGATGTGTAGGGGGAAGGTGAGGGCACAAGCAGTGATTGAGGCTGCTA CACTTGCTGCTAATATGCAGCCATTTGAGGTGGTTTACTATCCTCGGGCAAGTACTCCGGAGTTTTGTGTTAAGGCCTCT TTGGTTAGAGCAGCAATGCAGGTTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACCGAGGACTCCTCGCG GATTAGTTGGTTTATGGGAACTGTGTCCTCTGTTCAGGTTGCTGATCCAAGATGGTCAGACTCTCCTTGGAGACTTCTAC AGGTTGCATGGGATGAACCAGATTTACTTCAAAATGTTAAAAGGGTGAGCCCTTGGCTGGTTGAAATCGTGTCGAACATG CCTAACATCCACCTTTCCCCTTTCACGCCACCGCGAAAGAAAATGAGATTGCCTCAACACCCAGATTTCCCCCTCGATGG CCAGATTTCAGTGCCAACATTTCCCGGCAACCACCTTCTAGGTCCCGGAACTTCCTTCGATCGTTTATACGAAAATAGTC CTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTATATCCTTATCAGATCTCCACCTCAGTAAACTGCAGTCAGGT CTATTTTCATCTAATTTCACTCAATTTGATCATATTCATCATGCTGCTGCTGCTACACCAATGAGGGTCCCCAACATTAA CCCAACATTGCAAAAACCCAGCACTAGTGAAAATATCTCTTACTTACTATCCATGACAACAACAACAAACTCTACTCAGT CTAAGAAACCTGATGATGATGATGTGAAGCCGCCTCGACTTGTGCTTTTTGGCCAAACGATTCTCACAGAGCAACAAATC TCTCTGAGTTCATCCGCTGACAACACAGTTTCCCCGGTTCTTACTGGAAACAACAGTTCATCGGATGGAAATGCAGATAA AAAGACTAATTTTTCTAATGGTTTTGGATCTGCTCTTGATCGGCAAGATAGTTTGCCTAGTTTGGAGACAGGTCACTGTA AAGTTTTTATGGAATCAGAAGATGTAGGAAGGACCATGAACCTCACATTACTCAATTCTTATGATGAACTGTACAAAAAA CTAGCTGATATGTTTGGGATACAAAAATCTGGGGTGTTGAGTCATGTGCTCTACTGTGATAAAACAGGAGCAGTTAAACA CATTGGAGATGAAGCATTCAGTGACTTCACCAAAACAGCTAGGAGGTTGACCATTCTAATGGATTCCAGCAGCGACAATG GGAGAGTTTAG
Protein sequence (LotjaGi1g1v0691000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVSTESKEKLKEVVERCLDPQLWHACAGGMVQMPQVNAKVFYFPQGHAEHACEPVDFRSYNKLPSCIQCRVTGIKYMAD PETDEVCARIRLVPLHSNEVDFDDDGVGGGVNETKDNKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQ NILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKRGGSGGGPDPSSGWNS AGGTGFHPLSYAGFADSNQLLRNGHGNGNGLSPTSASLMCRGKVRAQAVIEAATLAANMQPFEVVYYPRASTPEFCVKAS LVRAAMQVRWCPGMRFKMPFETEDSSRISWFMGTVSSVQVADPRWSDSPWRLLQVAWDEPDLLQNVKRVSPWLVEIVSNM PNIHLSPFTPPRKKMRLPQHPDFPLDGQISVPTFPGNHLLGPGTSFDRLYENSPAGMQGARHAHYGISLSDLHLSKLQSG LFSSNFTQFDHIHHAAAATPMRVPNINPTLQKPSTSENISYLLSMTTTTNSTQSKKPDDDDVKPPRLVLFGQTILTEQQI SLSSSADNTVSPVLTGNNSSSDGNADKKTNFSNGFGSALDRQDSLPSLETGHCKVFMESEDVGRTMNLTLLNSYDELYKK LADMFGIQKSGVLSHVLYCDKTGAVKHIGDEAFSDFTKTARRLTILMDSSSDNGRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 693 | 681 | 0.0 | – | |
| PANTHER | 13 | 693 | 681 | 0.0 | – | |
| SUPERFAMILY | 117 | 225 | 109 | 7.06E-29 | ||
| Gene3D | 120 | 224 | 105 | 7.3E-38 | ||
| CDD | 120 | 222 | 103 | 6.87251E-22 | ||
| Pfam | 122 | 223 | 102 | 1.5E-20 | ||
| SMART | 122 | 224 | 103 | 2.4E-20 | ||
| ProSiteProfiles | 122 | 224 | 103 | 12.703 | ||
| Pfam | 292 | 374 | 83 | 5.4E-30 | ||
| Gene3D | 329 | 403 | 75 | 6.2E-25 | – | |
| MobiDBLite | 566 | 598 | 33 | - | – | |
| Gene3D | 609 | 693 | 85 | 3.2E-12 | – | |
| ProSiteProfiles | 610 | 693 | 84 | 17.843 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi1g1v0691000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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