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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0691800 |
| Transcript ID | LotjaGi1g1v0691800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein; TAIR: AT3G53390.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A2QVV2|CREC_ASPNC Probable catabolite repression protein creC; TrEMBL-Plants: tr|V7D0Q6|V7D0Q6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0691800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125991323..125998043) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAGCAACTAACTCCGAAGCTATAATCATAGCCGTCCATTTCGTTGACTGAAGGTTCCATTTGCTGAAAAAGAAAA AACCGATTCCCACAATTGGAATTGCCAATGCTATAGAACCGTATTTATATGAAATAGCCGCAACAAAAAAACCCATTATA ATTTAATTTTATTTAATTTCCTTTCATTTCTTCTTCTCTTTGATCTGAGAAAATCGAGAAAAACATAGAGCGAAGAAAAA GAAGAAGAAGAAGAAGAAGAAGACATTGTTCGTTGCTGTTAGAAACCCTAGCAATAGCAGAGTGATACAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGTGTGTGTGATTGATTGATGGTGATGATGATCGGTGCGTAGTGCGGTGGTGACGATGAT GAACACAGCGAACGGCATGGTGTCTCCGTCGTCGACTTCAGCGGGTAACAACAACAACGCACAGTCGCCTGGTCTCAAGA CCTATTTCAAAACCCCTGAAGGCCGATATAAGCTTCAATACGAGAAAACTCACCCTTCTGGTCTTCTTCATTACGCTCAT GGCAAAACCGTTACTCAGGTTTCCCCTCTCTTCTCCTTCAATTCTTAACCCCCGATACTTATGTGGAATCTAATCTACCT TTTTGCATCGTCTTGCTTTGTGATTGGATTCGTTTTTAGGGTTTCACTTGTGATTCATTTCTATGATCTCTGATTTTGAC TTGTTCAAGTTTTTGATCTAATTTCAATCTCAGTGGCATTTTTTTATTGGTTGGCATTCTGGGATTAGTGGTTGACTTTC AGAATTAAGTTTCATTCACCTGTGATTGTTTTGGATTAGATTCTTACTTATGGCCTATGGGAGTGAGTTCTCAACTGATA GATAAGTGATTGATTCATTGATTCTAGGTTAATGTTTTACTGACACTCTAAATCAAACTGCTCCAATTGATATTGATAGA TATGAAGAAAGAAAAGAGAGAGAAATGTGAGATATCATAGGAAAAGTAGATAGAGAATTAGAGATAGGAAGAGAAAGTAA GTGAAATTGAGATGGAAGAGAAAGTGGAGTGTGAATGAAAGTTGGGATGCAAAGAAGCTAGTTTCAACTTATGTGGAAAG TTGTTTATTAGAAGATTTATAGATATGATTGTTTTTTATCATTTTTCTTTTTTTTTTCTAGAAGTTTTTTGTTGAACTTT TTTCTTTAGAGCAATGATACCTGGCTCGAATAATGCCGCCTACGAATTAAATGAAATGGTTATTTCAACATCCCTCTTGA CAACCATACAGTGGGCTCCAGTATTTAATTAGTAATTTTCAATTTTTTTCAATAAAAGCAAGTTAATATACTAGGCTACG AATTTTCGTTTCGAGCCATGTCATTTCGCTTTTTTTTAATCTAAACTGGTTCTTGACTGTCTTTGAGCTATCTTCTAGAA TCAGTTTCGAGGAATGCTGGTCTTTTTTTGCTGGATGAATTCTTTAATGTTTTTTTCTTTCTGTTACTGTTTGTTGATTG GGCACGTTGTTGTTGGTTTGATTGGATGATCAGGTAACCTTAGCACATCTTAAGGACAAGCCTTCGCCTTCAACCCCGAC GACGGCGTCGTCTTCGAGTTTTAGTGCCGGTAGTGGGGTGCGGTCAGCGGCAGCTAGATTGCTGGGAGGAAGCAATGGAA GCCGAGCACTTAGTTTTGTTGGAGGCAATGGTGGCAGCAAGAGCAACGGGTTAAACAGTAGGATTGGTTCAATTGGTGCC TCGAGTTCAAGTAATGCAGTGGCTAATCCAAATTTTGATGGGAAAGGAACTTACTTGATATTCAATGTTGGGGATGCAAT TTTCATAAGTGATTTGAATTCTCAAGACAAGGTATACTGGTTGGGTTTTGATGGATTTTTTTTATTTTGGATTTGCTTCA TCAGGAGTTTCTTCTTGCATGTAGGACCCCATAAAGTCTATTCACTTCAGTAATTCAAATCCCGTATGCCACGCATTTGA TCAGGACTCTAAGGATGGGCATGATTTGCTCATTGGCTTGAGCTCTGGGGATGGTAAAGAAGTGTTCACTATGATTTAAA TTTCCATTTTGTAAGGAAAATTTAAGCTATATGAATTTACTATTCCTGTGTGTATTATTGTAGTCTACTCAGTGTCACTG AGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCTGTCAATAACAGGCA AGATTCAATGAACCGATCCCTTGTGATGCTTTAACTACGAGTGTTAGGCTTTTCTTAAAATTGTTTTATGACTTAATTTG CTAGAGTTCTTTTTCTTTGTGCACGGAGTTGTGATTGCTATGAGTGCTGATACACAAGAAAAGAAAGAGAAAGAGAAAGA GAGAGACCGGGAGAGGGAGAGGGGGGGGGAGATTCATTCTCAAATGTTGATCTAAGTAACAACCTTATTGGCAACAAACA TTTATTCTTTGGATGCTCTCGAGTTTGTTGATTGAGTAGTGTCAGTTTGGGAGAGTAGATTATAAGCAAACAAGTAGGCT GTTAATATTATGCTCAGAAGGTCAGATTTTGATGATATATGTCCCTTGACTGTCACTCTTTGGTCAAAATGAATAAGTTA TATATTGATTCTTGTCCTGGTGTCTGTTAATGATGCAGTTGCCTATTAAACTATTAAATGCTCATTATATGTTATATATG CTGGTGCTTCACAATTGAGTCTGTTTAAAGAGTAAATAGTTGATTTTTATGCGATATAGAATGTGTTCTCCTGTAAATTA TTTCCAATCTTTCTTATAACTTTTGGTACGTAGACAGAACAGAAAGGAACATTTTGTTTTGTTCTCTTTGGTTTCACCCA TGGATTCAAGTTGTGGGCGCATCTTGTGATGTGACTGCAATATTGCAGTTGCGGTAATCGATGCGGTAGTGTTGGCAACT TCATCACACTACAATTGCAGTGCGTTAGAAAAGTCGCGGTGAACGGCCACAACAGCTGTGCATTAGGCCACACCAAAGTG CCACTGGCCTCAGTTCTCATATGAATTGTTCTTCATTCTTCCTTTCTTTGTTTTGTGTAATTAGAGGGAATTTCAAAGGG TTAGGGGAATTTTAGGATGGTAGTGAGCTAGTGATGGAGGAAAAGTAGGATTTGGGAGGGGATGGAGATATGGGATTTGA AAGGCTACAATCAATGCAATCATATTACAAGTTCATGTCACAAGGGCAGCAATGTGAATTGAACCACAATGTTTGCAATC ACAGTGATCTCAACCGCCACTGCAGTTCAGAATCGTGGCTTCCACCCTTTTAGGTGGAACAAGAATGTACCACATTTTCT ACTTTATGTCCTGTCCTATTTATAATATGTCCTGTACCACTACTTTTTCTACATGAATTTTGAAATGCGATTGACTTCAG TGGTTATAATTCTTGGCATTGTGTGGTAGAGAAGTTAGAGGCCTGTTCTTTAAACTTGACATTTTATCAAAGTTGTCCAG ATTACCTTCTAGTAGTTTTATGTATTGGAATAATATGTCAATGACACTAATTGGAAGCAATCTTATTGATACATTGTGAT TTGACAGCCGTTGCACTTGTATTTCTTGGGTTCCTGGAGTTGATGGTGCTTTTGTTGTTGCTCATGCGGATGGGAATTTG TTCGTATATGAAAAGGCAAGACACATTTATCAAGAGAGGAGTTAATTTTTGGTTCACTTGTACAGTTTTCTTGTGCCGAA TTGAGCAGATATTTACCTCCTCTTCATATTGCAGAACAAAGATGGCGCTGGTGATTCTTCATTCCCAGTTATCAAAGATC AAACTCAGTTTTCTGTTTCCCATGCACGGTATAGCAAGGTATTCAGTCTGATGTCTTTTTGGTTTCCTTACAACTACTTT TGCTACAATTAATTTCTTCCTTCATCAGTAATTTTTGCTTGTTCTTCTAGACTGTTGCAGGTTTATCACTGAAAATTTGT TTGATTGCACAATTAACACCTTCAAGGCATAATTTGTTTGGAAGAAATGTTGAACTCTAGGTTTTGACTGTTTTTGTTAT TACAGCTATCACTTTTTAATTTTTTTTTTTTCCTTTGCAGAGTAATCCAGTAGCCAGATGGCATATATGCCAGGGATCGA TTAACAGTATTTCTTTCTCAAATGATGGGGCATACTTAGCTACTGTTGGACGAGATGGTATTTCTTTTCTACAACGTCAT CCTCACTTTGTGTTATTTCTACGACTTATTTCAGAAATAACATCTTAGACTTATTTTACTTATGCGTCCAGGGTATTTGC GAGTGTTTGATTACTTGAAAGAACAACTTATATGTGGTGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAGG TGAGTATGTTTGGGTTTTGTCAATTAATTAGTAAAATTGGCATGTTTGGATTAGTTCCAATTTTCTTTGTTCACCTTACT CCAGAGCTTGTAAAGTACTTATTTTACTTTAGCTTGTCACTCTCTCTTTAAAATTTTAATTCACACATTGAGAAAAGAAA CCATAACAAACACTCTGCTTTAACAGCATGGATGGAAAATATATTTTGACGGGAGGAGAAGATGATTTGGTTCAGGTTTG GAGTATGGAAGATCGCAAAGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTAAGTTGGTTGGTAGTTTTCAGTTGAC AAATTTTCCTAACATGCTGATTTAGTTTGTGTCAAATCCGTGATCAGGTCAGTGGAGTGGCATTTGACTCGTATTGGTCA TCACCAAATTCAAATGACAATGGAGAGACCATTATGTATCGGTTTGGTTCCGTTGGTCAGGTACTCAGAAAAATGTTTTC AGTATAAATTATCTGTCTGTAGCTTTGGCCCTGCTTTAAATTTTTCCGTGCATTTTTCTAGTTGACCTTGAAAATAAAAC TTGTTGTATCTGCCTGCTTGGAAATTGCATAATTACTAGATGGTTTTGGTTTCAAATGTGTGATGGAATGACCCTTGGAA ATATTCAAATTCAGTTGTGGTTTTCTAATTCTGGATCTGTGACTGGTTTCTTAGAATTGAGTAGAAACTAACATGTCAAG TATGTGCTTAGTTAAAGCTACCATAAAAGCAGAAGTGGAAAAATAAATTAGGAAGGCTTTATATAAGATATTTTACAGAT ATTAGAATTGAGTAGAAAGTTGTAGCAGCTTTCGGGCTTCATATAATGTTTCTGGGTAATTCCAATTCCTCAGTCAGAGT ATACCTGCCAAAATCGAAGCTAGTTGATGTTAATGTAAAACATGTTGGTGTATGCTTGGTAAGAAGATAGTGTGTAATTT GTTTTTTATTTTCAAAACTTGGTGTATTATATAGCAAACTGATGTAGGTAAGACAATCATCAACTTCACTCGTCCCTCAA GAAGATGGAGAGGGACAAGGCTAAACTGTGTGGCTTCACTTGAATATTTGCCATTTTGCCCATGATGTTAAAAAGAAATA TGGCCATATCATAATCAGTTACCTATGACTACTATTGTATGGGGGGATTATATTGTTTAAATTTTTTCCCAGCTCTTATG TTCGCACAAATTTTGGGGCTTAAGATGTTTTGGTTGTCAGGACACTCAACTGCTTCTATGGGACCTGGAAATGGATGAGA TTGTAGTGCCTTTAAGGCGATGCCCACCTGGTGGATCACCGACATACAGTACTGGAAGCCAGTCATCCCACTGGGACAAT GTTGTCCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGAGATGTTCCGAAAATCTCTCCGCTGGTTGCTCACCGGGT GCATACTGAACCACTCTCTGGCTTGATATTTACCCAGGAATCCGTACTTACTGCCTGCCGTGAGGGCCACATAAAAGTCT GGATGAGACCTGGAGCTCCTGAGAGCCAACCAAGCAACTCGGAAACATCGTTAGCTACTAGTCTCAAGGAGAAGCCTTTA CTTTCGAGCAAGCTCAGCAATTCTAGTTACAAATAATGACGAAATCTTAACATAAAGCGAATTTTAAGCAATTTTTTTCA ATATGGTTTGTTTATCTTTTATCTGGTTGGTTCACAGTTTTAACATCTTGATTCAAGTATAAATGAACCAGCTGGTCTCT CTGTATATTCAGTAATCACGGATGAGAATGCCATTGATGGAAGTGAGAGGATGAGCATGCCTCCTGTAATTACCAAACGG CCATTTATTAGGGTGTCTGATTAGGAATTACAGGAATAATGTGAAATTGGTCCTTAGAGATCGGTACTTTCAAAGTGAAT ACAAACAAGCCATTATTTATTGTCTTAGTATTTAATCTAATAATTTATAGTTTACTAACAACCTAGATTGCATAAAGTTG AGTATCGAACTGTTTGCTTGCTGTTATGTTGTTATTTTTAACGATGTCATGAGTATATAATCTGAACGTTTGGGATGGTA TAAAATACAAGGTTATAGCGAGTTTACGAAGATGCTGATAAGATTCTACTATATTCCAGTTTTTAAACTCTAATTAGACT CTAATTAGTGAAGGAGCTTGGAGTGAATTATACTGACCCTTAACAGATTTTTGAAATACAGATCACAGATTTTCTGTCGG TAACTTAACCAACTTAAATTCCGAAAATCTCTATTCAAGATTGAATTTTGGTGTGAGACCACCACCATATTTTTAACAAC G
CDS sequence (LotjaGi1g1v0691800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAACACAGCGAACGGCATGGTGTCTCCGTCGTCGACTTCAGCGGGTAACAACAACAACGCACAGTCGCCTGGTCT CAAGACCTATTTCAAAACCCCTGAAGGCCGATATAAGCTTCAATACGAGAAAACTCACCCTTCTGGTCTTCTTCATTACG CTCATGGCAAAACCGTTACTCAGGTAACCTTAGCACATCTTAAGGACAAGCCTTCGCCTTCAACCCCGACGACGGCGTCG TCTTCGAGTTTTAGTGCCGGTAGTGGGGTGCGGTCAGCGGCAGCTAGATTGCTGGGAGGAAGCAATGGAAGCCGAGCACT TAGTTTTGTTGGAGGCAATGGTGGCAGCAAGAGCAACGGGTTAAACAGTAGGATTGGTTCAATTGGTGCCTCGAGTTCAA GTAATGCAGTGGCTAATCCAAATTTTGATGGGAAAGGAACTTACTTGATATTCAATGTTGGGGATGCAATTTTCATAAGT GATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAATTCAAATCCCGTATGCCACGCATTTGATCA GGACTCTAAGGATGGGCATGATTTGCTCATTGGCTTGAGCTCTGGGGATGTCTACTCAGTGTCACTGAGACAGCAATTAC AGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCTGTCAATAACAGCCGTTGCACTTGTATT TCTTGGGTTCCTGGAGTTGATGGTGCTTTTGTTGTTGCTCATGCGGATGGGAATTTGTTCGTATATGAAAAGAACAAAGA TGGCGCTGGTGATTCTTCATTCCCAGTTATCAAAGATCAAACTCAGTTTTCTGTTTCCCATGCACGGTATAGCAAGAGTA ATCCAGTAGCCAGATGGCATATATGCCAGGGATCGATTAACAGTATTTCTTTCTCAAATGATGGGGCATACTTAGCTACT GTTGGACGAGATGGGTATTTGCGAGTGTTTGATTACTTGAAAGAACAACTTATATGTGGTGGGAAAAGTTATTATGGTGC TTTGTTATGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACGGGAGGAGAAGATGATTTGGTTCAGGTTTGGAGTA TGGAAGATCGCAAAGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTCAGTGGAGTGGCATTTGACTCGTATTGGTCA TCACCAAATTCAAATGACAATGGAGAGACCATTATGTATCGGTTTGGTTCCGTTGGTCAGGACACTCAACTGCTTCTATG GGACCTGGAAATGGATGAGATTGTAGTGCCTTTAAGGCGATGCCCACCTGGTGGATCACCGACATACAGTACTGGAAGCC AGTCATCCCACTGGGACAATGTTGTCCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGAGATGTTCCGAAAATCTCT CCGCTGGTTGCTCACCGGGTGCATACTGAACCACTCTCTGGCTTGATATTTACCCAGGAATCCGTACTTACTGCCTGCCG TGAGGGCCACATAAAAGTCTGGATGAGACCTGGAGCTCCTGAGAGCCAACCAAGCAACTCGGAAACATCGTTAGCTACTA GTCTCAAGGAGAAGCCTTTACTTTCGAGCAAGCTCAGCAATTCTAGTTACAAATAA
Protein sequence (LotjaGi1g1v0691800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNTANGMVSPSSTSAGNNNNAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPSPSTPTTAS SSSFSAGSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGLNSRIGSIGASSSSNAVANPNFDGKGTYLIFNVGDAIFIS DLNSQDKDPIKSIHFSNSNPVCHAFDQDSKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCI SWVPGVDGAFVVAHADGNLFVYEKNKDGAGDSSFPVIKDQTQFSVSHARYSKSNPVARWHICQGSINSISFSNDGAYLAT VGRDGYLRVFDYLKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWS SPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRCPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKIS PLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGAPESQPSNSETSLATSLKEKPLLSSKLSNSSYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 6 | 550 | 545 | 0.0 | – | |
| PANTHER | 6 | 550 | 545 | 0.0 | – | |
| SUPERFAMILY | 155 | 514 | 360 | 1.72E-34 | ||
| SMART | 217 | 263 | 47 | 48.0 | ||
| SMART | 292 | 331 | 40 | 1.8E-5 | ||
| ProSiteProfiles | 299 | 437 | 139 | 16.375 | ||
| Pfam | 303 | 331 | 29 | 4.4E-4 | ||
| SMART | 334 | 373 | 40 | 0.0084 | ||
| ProSiteProfiles | 341 | 382 | 42 | 10.007 | ||
| Pfam | 348 | 373 | 26 | 0.015 | ||
| SMART | 376 | 428 | 53 | 1.2 | ||
| SMART | 478 | 515 | 38 | 15.0 | ||
| MobiDBLite | 515 | 551 | 37 | - | – | |
| MobiDBLite | 520 | 551 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0691800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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