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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0691900 |
| Transcript ID | LotjaGi1g1v0691900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G03170.1 FASCICLIN-like arabinogalactan-protein 11; Swiss-Prot: sp|Q8LEJ6|FLA11_ARATH Fasciclin-like arabinogalactan protein 11; TrEMBL-Plants: tr|A0A1J7FW15|A0A1J7FW15_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0691900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125999790..126001416) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAATCAGCAAAACTCTAACACCACCAATTAATCAAAATTGAAACTCACAACCCAATCTTCACCCCCAATTAATGAAA ATTGAAACTCACAACCCACCTCCAAATGCAGAACATAGCCAATACGGAAAGCACGATGCTCTTATATCACTTGGAGAGGA AATCCAAAGCATAAGAATATGCAACAATAAACTAACATCGAAGACCACTAAGAGAAACAGACATCACACTACATCTTTAT CAAGAACCTTAAGATATTGAGCTTATGAGTCACATATCTTATTGTTTTTTTCTTACTCATTTTTAATCAATGTATGACTC TTAAATTAGTTTTAATTCTCAATGGGGAAACAATCCTCCTTCACTAAAATCTCTTGCTTTTAGCAACAAAATTAATTAAT TGAGGGCCCCTTGCCACCTTAATACCTGATGTTTAATTGTAACCTTTCACCTAACCTTTAAATTCTCAATTCACCCTCTC CTTAACAAGACACAACATAACAATATATATACCACATCCCTGCTTCCCCTTCCAATAGAAATCAAATCACAAACTCTTCT TCTTCTTCTTCCAGCTTCCTCACAATGGCAAAGGCAAATCTATCCCATCTCCTCCCTCTCCTCCTCCTCAACATGTTCCT CTTCCTCTTCCAAACAATCTCTGCTCAAACAGCAGCAGCTCCAGCACCAGCAGGACCCACCAACATCACCCAAATCCTTG AGAAAGCAGGGCAATTCACAACCTTCATCAAGATTCTCAAAGCAACCCAAGTAGCTGACCGCATCAATTCTCAGCTCAAC AACTCAAACCAAGGCCTCACCATTTTCGCACCCACAGACAACGCCTTCTCCAGTTTAAAACCAGGGACATTGAACTCCAT CAACACACAGGACCAATTGCAGCTTATTCAGTTCCATATTCTTCCTACACTCTACTCAATGTCACAGTTCGAAACCGCCA GTAACCCGTTGCACACACAGGCTGGGAACAGTGGCGACGGTGAGTACCCTCTGAACGTGACCACCTCAGGGAACCAGGTG AACATAACAACAGGGGTGGTCGAGACCACCGTGTCCAACACTATCTACAGTGATAAGACGCTCGCGGTGTATCAGGTGGA GAAGGTGCTCCTTCCTCTGGCGCTTTTTGGCCAAGCTCCAACCGCCGCGCCGGCGGAGGCTCCGGCGCCGACCAAGCCGG AGAAAAATGTCCGGGCTTCTGATTCTCCATCTGGGTCGTCGTCGGATGCATCAGTTGATACTTCCAGTGCGGTGGGTGTC AGTGTCACCTACATTGGTGCAGTTGTTGCTGCCATTGTTGTTTCTTGTTTGTGGATGTAAGTTTTAGGATGGCATGGCTG TCTCATTTTTTTCCTATTTTCTTTTGTTTTTTAATTTGATTTTTATTTTATTATTTTTCCCTTCTATTGGGAGTTTGAAC TTTGAATTGAGTGATGATGGAGATCCCGTGTACTTGTGTTGCTATTTGCTATCAGGTTAAAAAATACATTTTTGTTTGGA TTCATGTTCAATGTAAAACATTTTCTATTCTTTATGTTGGGAGAGACTGAGAGTGAGAATGGCTTGGAGGTGGGTAGAAG CTTAAACCAAAATGTCTTGAGGTAATT
CDS sequence (LotjaGi1g1v0691900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGGCAAATCTATCCCATCTCCTCCCTCTCCTCCTCCTCAACATGTTCCTCTTCCTCTTCCAAACAATCTCTGC TCAAACAGCAGCAGCTCCAGCACCAGCAGGACCCACCAACATCACCCAAATCCTTGAGAAAGCAGGGCAATTCACAACCT TCATCAAGATTCTCAAAGCAACCCAAGTAGCTGACCGCATCAATTCTCAGCTCAACAACTCAAACCAAGGCCTCACCATT TTCGCACCCACAGACAACGCCTTCTCCAGTTTAAAACCAGGGACATTGAACTCCATCAACACACAGGACCAATTGCAGCT TATTCAGTTCCATATTCTTCCTACACTCTACTCAATGTCACAGTTCGAAACCGCCAGTAACCCGTTGCACACACAGGCTG GGAACAGTGGCGACGGTGAGTACCCTCTGAACGTGACCACCTCAGGGAACCAGGTGAACATAACAACAGGGGTGGTCGAG ACCACCGTGTCCAACACTATCTACAGTGATAAGACGCTCGCGGTGTATCAGGTGGAGAAGGTGCTCCTTCCTCTGGCGCT TTTTGGCCAAGCTCCAACCGCCGCGCCGGCGGAGGCTCCGGCGCCGACCAAGCCGGAGAAAAATGTCCGGGCTTCTGATT CTCCATCTGGGTCGTCGTCGGATGCATCAGTTGATACTTCCAGTGCGGTGGGTGTCAGTGTCACCTACATTGGTGCAGTT GTTGCTGCCATTGTTGTTTCTTGTTTGTGGATGTAA
Protein sequence (LotjaGi1g1v0691900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKANLSHLLPLLLLNMFLFLFQTISAQTAAAPAPAGPTNITQILEKAGQFTTFIKILKATQVADRINSQLNNSNQGLTI FAPTDNAFSSLKPGTLNSINTQDQLQLIQFHILPTLYSMSQFETASNPLHTQAGNSGDGEYPLNVTTSGNQVNITTGVVE TTVSNTIYSDKTLAVYQVEKVLLPLALFGQAPTAAPAEAPAPTKPEKNVRASDSPSGSSSDASVDTSSAVGVSVTYIGAV VAAIVVSCLWM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 9 | 241 | 233 | 8.0E-95 | – | |
| Phobius | 9 | 22 | 14 | - | – | |
| PANTHER | 9 | 241 | 233 | 8.0E-95 | – | |
| Phobius | 23 | 31 | 9 | - | – | |
| Phobius | 32 | 228 | 197 | - | – | |
| SUPERFAMILY | 35 | 184 | 150 | 1.24E-27 | ||
| ProSiteProfiles | 38 | 182 | 145 | 20.895 | ||
| Gene3D | 38 | 185 | 148 | 6.9E-15 | ||
| Pfam | 50 | 184 | 135 | 2.7E-21 | ||
| SMART | 79 | 185 | 107 | 4.3E-20 | ||
| MobiDBLite | 195 | 225 | 31 | - | – | |
| MobiDBLite | 209 | 225 | 17 | - | – | |
| TMHMM | 228 | 250 | 23 | - | – | |
| Phobius | 229 | 250 | 22 | - | – | |
| Phobius | 251 | 251 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0691900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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