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LotjaGi1g1v0693400.1

Overview

Field Value
Gene ID LotjaGi1g1v0693400
Transcript ID LotjaGi1g1v0693400.1
Lotus japonicus genome version Gifu v1.2
Description Glycosyltransferases; TAIR: AT2G37090.1 Nucleotide-diphospho-sugar transferases superfamily protein; Swiss-Prot: sp|Q9ZQC6|IRX9_ARATH Probable beta-1,4-xylosyltransferase IRX9; TrEMBL-Plants: tr|I1NA65|I1NA65_SOYBN Glycosyltransferases; Found in the gene: LotjaGi1g1v0693400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126110118..126113307) extracted from Lotus japonicus Gifu genome v1.2.

AAAAGCTAAACATTCAGTTTGGCAGTAGCAATCATAACCTCAATTGTTTAAACGTTTTCCTTAACACATATTTGGTGGTA TCTAAGTTTATATTATGTCACATGGCTGTGCCTTGTAATAACTAGTCATTCCATTCCACTTTGAACATTGAGCTTCAGGT GGTTAGTTTTAGAGGGTTTTGCAGAAGATGGGTTCAGTAGAAAGATCAAAAAAGAAAATTCATTTATGGAAGAAAGCCAT GCTCCATTTTTCTCTATGTTTTGTCATGGGGTTCTTCACAGGCTTAGCTCCAACAGGTAAATCTTCTTTCTTTTCTGCAG CCACTAATGGAACAACAAGATTTGCACCACCACCACTTGATGAAATGTCACAAAGGAAAGCAAATGTCAATAGAACTTGG ATAGCTCCAACCTTGCCTGTGAAGCCTAGAGGACAGAAAACAACAACAAAGTTGATGGTGAAACAACTTCCTCTGTTGAA GCCTAGAAGGCTTCTAATCATTGTGACTCCAACAAGCACAAAACTTCCTTACCAAGCAGTGTTTTTGAGAAGGTTAGCAA ACACTATAAAACTAGTTCCTCAACCCTTGGTGTGGATTGTGGTGGAAGCTAAAAGTGATTCCACTGAACTGCCAGAGATG CTGAGGAAGACTGGTATCATGTATAGGCATGTGGTTTTCAATGAGAACTTCACTGACTTGGATGCAGAACTGAATCACCA GAGAAATCTTGCACTTAAGCACATTGAACATCACAGGCTCAATGGGATTGTGCACTTTGCTGGTCTTTCCAATGTTTATG ATCTCCAATTCTTCCAGCAGCTTAGAGATATTGAGTATGATTAAACCCTTTTACTTGCTAAACTAATTTTATCTTTAATT CAATATTGTTTACACTGTTATATCTTTTGGGGATTCTTTTGGGTGGCGGGAGTGGAATTAAGCAGAAAAAATTAAGGGAA AATGCATTAGCTAGTGTCTGTGCTAACGTAGTACATGTTTAAAAATTCTTTTACAATTAATTCTAAAAGATAAAATTAAT ATTGGAAAGAAGCTAGTGAGTAAATTCTAGGTGTCAAAGTTGATTCTTAGAAAAGAGGCATTGATCAAAACATGTTAGTC GTTTGGTGAAAGTTTAAAAAATAAGCAACTTTCATGTCTATATAGAAAATACAAGTGGAAATCTTTAGGTGTACCAAACC CAAGTGCTAATAGTAATTATAATAATACTAGGAATCATTAATCATGCTTTATTTTTTAAAATTAAAGTGTACCCTTCTTA ATTATGTATTCATTTGGCAACTGAGCAGGGTGTTTGGAACATGGCCTACAGCATTTTTGGCTGCAAACAGGAAGAATGTT ATAATAGAAGGACCTGTTTGTGATTCTTCTCAAGTCATTGGTTGGCATCTTAGAAGTATGAACAATGAAACTGACACTAT CACTCCTCCCATTCATATTTCAAGTTTTGCTTTCAATAGCTCTATCCTTTGGGATCCAGAGAGATGGGGTCGCACTTCCT CTGTTCAAGACACCTCCAAGGTAAATATTGTGATTTACACATTATGAATTTATCAAATCTAAGTTGTTGTTTTGTTTTTT ACCAAGCTCCGTGGTTGGATCCAGCTTGGCTGCAATCAATTTTTGGTTGTCACTACTGCAGTTAAGGGATCTCGGATGTA GGATGAAGATCGGACATTGCCGGTATATCATATGAAAAACATGTTCTCAGGATCTTAGCTATCTGATTTTCATCCAATGG CCGAGATTCCTTTACTGCAGTGACCGACCGTACTAAAAATTAACCGCATAGAATCCATTTCCAGTGTCATGATCCTTATC ATGATGCTTATCGATGTAAATTTATCTAGGGTCTTTCGTCTCTCCGATAGACAAGCTTTATGTTTAAAAGGTAAAACTAT AAACATCATAACTAGTTGATAATTTTGTTAAAACTCATTTTGAAATGAAAAATTGATATGCACTAAGATACACGTATGCT TATATATATAACAAACGTTAGCTTTAATGAACATGAATATGCCTTCACTGCTTGAACTTCACTTGCGTTTAGTTAACGTT TGGCCAACCTCCAACTACTTTGTAGAAGAAAATAATCAAAGGCAAAAAAAGAGTAGTATATTAGGTAATATAATGACAGC TTTGATTGACTAGTTGAACTAATCAGAATACTAACTATCAACTATGTAGTGTTTTCTACTCTGGCATAATGTCACTGATA ATGCATGTTGCTTCCTTTTACTCCAAGATAGAACCCACATTCAACATCATTAGAAAACGTATTCCTACTGAAATGCAAGC GAAAATATATATCAGTATCACTTAGGCTACGTTTGAATACCTGTTAGCACTTATGTAAACTTATGTGAGCACTTACTTCA ACATAAAAAGTGAATGAAATTTTTTTTATGTATAGGTTACAAGTATGTTCGCATTAATTAATTAGTTTGAGTAGTGGATA CAAAATTTAATACACTTTCCACCCAAAAGTTACACTTTGTATCTAAATCAAACAAAGCTAAACAAGTTTGTTGCTTTTCT TTTCTTCTTCTTTGTCCTTATTACTATCTTGTTTTTTTGTTGTTATCTTAGAATTCAATCAAGTTCGTGAAGCAAGTAGT GCTAGAAGATGAGGGTAAGTTGAAGGGAATTCCAGCAGAGGACTGTTCCAAAATCCTGCTATGGCGTTTCAACTTTCGTG CCCGTTCCATTTCAAATCACTAATTTCTGACTATTAGTATATCAGATAAAAGGGGACCAAATGAAATAATGCAGAAATTG GCCAATACAGGAATTAGATCCCTATTACTTTATGAAATATATTCTTTGATTTTTATTTTGCTAATTTCTTCCGAATGTGT ATTTGATTATAGTTTTGTTGATTCTCAAGTCTCAACGCATACAAAATTTTAGCTAGCTTATGTAAATGAGAGGGTCTTCT GCTATGAAGCACAAACATTTCAAACATATATGATCATTTTTCGAAGAGGTTCTCCAGGTTATAGCAAATTTGTTGTGTAT TTTTTGTTAGTCTCGAAATTTGTGAGTAGCGGTTTTTTTTTTGGGGGTCAATGGGTAGTGGTTTATTCATAAAAACAAGT GGATCAAGGTTGGGCTCATTTACAAAAACCAGTCAAAGATTTTTTTGGGGTGAAAAAGGGGACAAATCCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0693400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTCAGTAGAAAGATCAAAAAAGAAAATTCATTTATGGAAGAAAGCCATGCTCCATTTTTCTCTATGTTTTGTCAT GGGGTTCTTCACAGGCTTAGCTCCAACAGGTAAATCTTCTTTCTTTTCTGCAGCCACTAATGGAACAACAAGATTTGCAC CACCACCACTTGATGAAATGTCACAAAGGAAAGCAAATGTCAATAGAACTTGGATAGCTCCAACCTTGCCTGTGAAGCCT AGAGGACAGAAAACAACAACAAAGTTGATGGTGAAACAACTTCCTCTGTTGAAGCCTAGAAGGCTTCTAATCATTGTGAC TCCAACAAGCACAAAACTTCCTTACCAAGCAGTGTTTTTGAGAAGGTTAGCAAACACTATAAAACTAGTTCCTCAACCCT TGGTGTGGATTGTGGTGGAAGCTAAAAGTGATTCCACTGAACTGCCAGAGATGCTGAGGAAGACTGGTATCATGTATAGG CATGTGGTTTTCAATGAGAACTTCACTGACTTGGATGCAGAACTGAATCACCAGAGAAATCTTGCACTTAAGCACATTGA ACATCACAGGCTCAATGGGATTGTGCACTTTGCTGGTCTTTCCAATGTTTATGATCTCCAATTCTTCCAGCAGCTTAGAG ATATTGAGGTGTTTGGAACATGGCCTACAGCATTTTTGGCTGCAAACAGGAAGAATGTTATAATAGAAGGACCTGTTTGT GATTCTTCTCAAGTCATTGGTTGGCATCTTAGAAGTATGAACAATGAAACTGACACTATCACTCCTCCCATTCATATTTC AAGTTTTGCTTTCAATAGCTCTATCCTTTGGGATCCAGAGAGATGGGGTCGCACTTCCTCTGTTCAAGACACCTCCAAGA ATTCAATCAAGTTCGTGAAGCAAGTAGTGCTAGAAGATGAGGGTAAGTTGAAGGGAATTCCAGCAGAGGACTGTTCCAAA ATCCTGCTATGGCGTTTCAACTTTCGTGCCCGTTCCATTTCAAATCACTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0693400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSVERSKKKIHLWKKAMLHFSLCFVMGFFTGLAPTGKSSFFSAATNGTTRFAPPPLDEMSQRKANVNRTWIAPTLPVKP RGQKTTTKLMVKQLPLLKPRRLLIIVTPTSTKLPYQAVFLRRLANTIKLVPQPLVWIVVEAKSDSTELPEMLRKTGIMYR HVVFNENFTDLDAELNHQRNLALKHIEHHRLNGIVHFAGLSNVYDLQFFQQLRDIEVFGTWPTAFLAANRKNVIIEGPVC DSSQVIGWHLRSMNNETDTITPPIHISSFAFNSSILWDPERWGRTSSVQDTSKNSIKFVKQVVLEDEGKLKGIPAEDCSK ILLWRFNFRARSISNH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 48 48 - –
PANTHER
PTHR10896
1 330 330 3.5E-149
IPR005027
PANTHER
PTHR10896:SF59
1 330 330 3.5E-149 –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 18 18 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
19 30 12 - –
TMHMM
TMhelix
21 43 23 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
31 48 18 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
49 336 288 - –
Gene3D
G3DSA:3.90.550.10
101 336 236 1.6E-63
IPR029044
SUPERFAMILY
SSF53448
101 334 234 8.15E-68
IPR029044
CDD
cd00218
104 330 227 4.79955E-81
IPR005027
Pfam
PF03360
123 327 205 5.3E-60
IPR005027

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0015018
Molecular function Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity Catalysis of the reaction: UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0693400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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