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LotjaGi1g1v0698800.2

Overview

Field Value
Gene ID LotjaGi1g1v0698800
Transcript ID LotjaGi1g1v0698800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Eukaryotic translation initiation factor 3 subunit A; TAIR: AT4G11420.1 eukaryotic translation initiation factor 3A; Swiss-Prot: sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A; TrEMBL-Plants: tr|A0A0S3RYH0|A0A0S3RYH0_PHAAN Eukaryotic translation initiation factor 3 subunit A; Found in the gene: LotjaGi1g1v0698800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126662515..126668706) extracted from Lotus japonicus Gifu genome v1.2.

ATGACTTCGTTTTTGAAACCTGAAAACGCCCTGAAAAGGGCGGAAGGTTAGTCAGTAGATTTTTATTTTTTTTTCAGAAT TTTGCCCGATAATAATTGATGCAATTGAATTTAACCGTTGTGGTTCTATGTGCGATTCGATTCGATGTACAGAGCTGATC AATGTGGGGCAGAAGCAGGATGCTTTGCAGACCCTCCATGATGTTATTACTTCGAAGAGATATAGGGCTTGGCAGAAGAC CCTTGAGAGGATTATGTTCAAGTATGTTGAACTGTGCGTGGAGCTGCGCAAAGGGAGGTTTGCGAAGGATGGGCTTATCC AATATCGTATCATATGTCAGCAAGTGAATGTTAGCTCGCTGGAGGAGGTTATCAAACATTTCATGCACTTGTCGACTGAG AAAGCTGAACAAGCCCGTAGCCAGGCCCAGGCATTGGAAGAAGCGCTTGATGTTGATGATCTGGAGGCTGATAAGAGGCC TGAGGACTTGATGCTAAGCTATGTCAGTGGTGAGAAAGGAAAGGACAGATCTGATCGGGAGCTTGTCACCCCTTGGTTTA AATTTCTGTGGGAAACTTACAGGACAGTGCTTGAAATATTACGGAACAACTCAAAATTGGAAGCCTTGTATGCTGTAATA TTTCTTGTCCTTATACTAATTTTTGGTGTTATAGTTGCTTCATGAGTATCTTTCTGATTTTTGAAAATTTAGATATTATG CGATCAATTCAATCAATACCTATGTTTGATGCCTGACTTGATCAATTGGTTGTTGTTTATATTTTAATGCTGACCTTCAT CTTTCTCTCTGCCTGTCTGGTTTTGAGAGACCGGTTAATACATGACATTGTGGAATTTTTGGTTTACCATATGCCATGTT GTATGAACTTAATCTTGCATTGTTTCCGAGTTTTAGTGTTATTAAATTTAAATGACTAACAGTGGCTGGTATTTCAGATG AGTAGCAGTTAATTAAATGGGTTTTAGGATATTTTGTTATCCATTAACTCATTCCTACTTGTCTCTGTCATTTCCTATTG TTGCTTGCCTTCTGGTAAAGAATGATGATTTGATGATGCGTACTTGCATTTTTATGTCAACTTTCTAATAGAGAATCCAC CTGCAGATGACAGCCCATCGAGCTTTCCAGTTTTGTAAGCAATATAAACGTACGACAGAATTTCGAAGACTTTGTGAAAT TATAAGAAACCATTTGGCCAATCTTAATAAATATCGGGATCAACGAGACCGTCCTGATCTTTCTATTCCTGAAAGCTTGC AACTTTATCTTGACACCAGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGTTGGTCATCTCTCTCTC TCTCTCTCTTCCTCCCCTCATTTATGGCATGCTTGGTTTTGTTATTGTTTATACCATAGATAAAGAATTCATGGCAAATA CAATCTGTGAATTTGTTTATGCAGGAAGCCTTTCGATCAGTGGAAGATATCCACGGTCTAATGTGCATGGTCAAGAAAGT GCCCAAGGCATCCTTGATGGCTATTTACTATGTTAAGCTGACAGAAATATTTTGGGTATCATCAAGTCATCTGTATCATG CGTATGCATGGTTCAGGCTCTTTTTATTACAAAAGAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTGTTAGCT TCATCTGTTGTTCTGGCTGCTCTCTCAGTGCCTCCTCATGATCACACTCATGGTGCATCTCATTTGGAACTGGAGCATGA AAAAGAGAGAAATTTGAGGATGTCTAATCTCATTGGCTTTAATCTTGAAAACAAACCGGAGAGCAGAGAAGTGGTATTTT CCTTCCCCTCAATTGTACTACAAAGGTACCTTGTAGATATTTTTTCATAAAACTTACTATTTACTCTTGTTTCTGTTTTG GCTGTCCACAGCTCTCAAGATCATCACTTCTTGCTGAACTGGTAAGATGTTCTTGTTAATTCTAACTACTTGAAATGCAC AATTCTTTTCAGAACTTTATTAATTCTTTCCTTTAGCTCTGCTCTTTTTTAATTCACATATAAGATCTTGGAGTATACTT CTGTTGCGGTTATTGTAATTATGTAATATGTTTTTATGTAGATGATGAGCGGGTTTGGCTTCAATAAAATAAATTTTAGT ATTGTAGGATCTCTTCTTTTATTTTTGTTCTTTGACTGTAATTTTTTTTTCTTAAATATTTGGTATCCTTTTAAAATTTG ATTAATACTTCTTTTTTTAGCAACTTAGGCCGGTTTTGGAAGAGATTAATTGAGCTTACCGTATATTATATGCGCTTGCA AATGTTTAGGATAGCTTTTGTTTAATAGCTTATGACCTTCTTATAACTACTTATCAACTGTTTTGACTTTATTCTCATAA ATTCATATTAGCTTATGATTAAGTGTATACGATACCTATACCCTATTTTAAAATTATTTTAATAAGCTAATCAAATTAGC TTATGAATAAGATCTTATTGTCATAAGTGTTTAATTAAATCTGGTTATCAAAACGCACCCTTATTCTCTACTTTCTCTGC CAAACTGCTATATATCTTTTCCTCTTTCTTGTTTAAGATTTTTATCTTTGCATTTCACGTGTGAATATTTGTTGCTTTTT TAAGTATTTTAACCTCAGTATACATTCACTGCCATGCCTGTTTATGGTATTTGGATTAGATGGAAAGGATAGAAATTTTA AAATGTTGGCATTATATTTGTTGTCGCGGTAACTACAAAACCCAAACCCAGTTCTCCTCTTTGTGAAAATATTCTCAGTC AAGTAATAGTGTAACGTCACTATTAGTTAAAGTGCAGGCCCAATATAGACTACTAACTCAGCAAGACTGTAAAACAATGA GACTTTTAAATTTTAACAATATCCTAATCCTGAATGATGTATTTTATCTCAACAATTATGTGGATGTATGTTGTGCGTAA ATGATCTGATCAGTTAAACTTTTTCCATAGTAGATTGATTTTTTTTCTTTTAAAACGGCCTTAGTAATGTATATGTTAGT ATGTGTGTGTGTGTATATATATATTTAAATTGGTTATCAACTGCAAGCCTTCAAAGTAATGCAATCTTTTCAATTAATAG TGTGGTAGATTCGGTCTGAAGTTTGTGTCTTTCCATTCATTACAGGCTTCGAAGGGTGTGATGTCATGTGTAACACAGGA AGTGAAGGACATTCACTATCTTTTGGAGCATGAATTTCTCCCTTCAGATCTTGCACAGAAAGTGCTGCCCTTGTTAACTA AATTCTCAAAACTAGGTGGTAAGCTTTCCACTGCTTCATCCATTCCAGAAGTGCATTTGTCACAGTATGTTCCGGCACTG GAAAAACTAGCGACCTTGAGGTTGCTACAGCAGGTATGTTTTCAGTTTACTCCTTTTTACTGGCATGTGCATGGATGCTT TTTCTTCTGTTTAAATGTGCTTCTCTATGTTAATTTATTTCCTCTTTTTCTCCCAGGTTTCTAATGTGTACCAGACTATG AAGATTGAGACTTTATCTGGGATGATCCCCTTCTTTGAATTTTCTGTGGTGGAAAAGATTTCTGTGGATGCTGTTAAGCA GAAGTTTGTATCAATGAAAGTTGACCACATGAAAAATGTTGTAATTTTTTGTAAAATGGTATGTTTTTCTTCATTTTGGT GTGGTTGTCCTCTTTTAAACTTTATGATGCAGTATAATTACTTTTTCTTGTTAGTTCAGCCAAATAACTTAACAGATAAA GTTTCTGTCATGTTATGTTATTCAAGGTATACATTGGTTTGTCAATTGATCATCTTTCATCAGAATCATGATGCCATGTG ATATAAAAATGAGTTATTTGTTTGACAACGTTCTGAAATTTCTATACACTTCAATAGGTCATTTACGTAGTTTTTTGTGC GGCCGTCAAGGATTTTTCTAAATTATTATGTTTCGATTGTATTTCAGCACTGTCTATCACAATTTACCAGTTGTTTATTG GCAATTGCTTGATTTCTATTGCAGAGTCTTGAGTCTGATGGCTTAAGAGACCACTTGGCCAATTTTGCTGAGCGATTGAA TAAGGCTAGACAAATGATTTATCCTCCTGATAGGAAACCATCAAAACTTGGAGCTTTGCTTCCGACTTTGACTGAAGTCG TGGCCAAAGAGCACAAAAGGCTCCTTGCTCGAAAATCAATTATTGAGAAGAGGAAAGAAGAGCAAGAACGACAGCTTCTT GAAATGGTATAGTATAGTCCTAGTAATTGGTATTTAGGTGTTGCATATAAGGAGTTATGGTTTTTAAATGATTTCACTTT CCTTTGATGTTTATATTTGAAGGAGCGTGAGGAGGAATCGAAGAGATTAAGACTGCAGAAAATAACAGAAGAGGCAGAAC AAAGAAGGCTTGCGACTGAGTATGAGCAGAGGAAGAATCAAAGGATCCTTAGGGAGATAGAGGAAAGAGAAAATGAAGAA GCTCAAGCTTTACTTCAGGAAGCTGAAAAACGTATCAAAAAAAGGGGGAAAAAGCCAATGATTGAGGGGGTAAGTTGAAG TCTGGCTTCTATTGAATTTCTGATTTGGGTCAGCAAATGTTGACGATATATTGTATCTACAGGAAAAAATTACCAAGCAG ACATTGATGGAGTTGACTTTGACTGAACAACTCCGTGAAAGGCAGGAAATGGAAAAGAAGCTGCAAAAACTTGCTAAAAC CATGGATCATTTGGAAAGAGCCAAAAGAGAAGAAGCTGCTCCGCTTATTGAAGCTGCATATCAACAGCGCCTAGTAGAAG AGAGGGTTCTTCATGAGCGTGAGCAACAAGTATGTTGAATTCTCTTGTTTGCTAGAATAACTTGTGTGCTTGTGTAAATA TTTGGTTTTGTATTTTCTTCTTTCGGAAATTCTCAAATTATTTTATTTTTCATCCTTTTTTTGTCTTGAATCTTCACCAC CCAAAACTCTTACTGTTTGAAACAAATTTTGTCTCATACTAATTGTGTCAGTCCATGATATGATGCAGCTAGAGGTTGAA GTAAGCAGACAGCGGCATGAGGGAGATCTTATTGAGAAGGAGAGGCTTTCTCGAATGATGGGCAGTAAAGTTAGTATCAT CAACCCTTTGGCTTCTCTTCTTTTTGTCTTGGCCATTCCAATATACAAGTTTCTTTTTTTTCTTCTCATTGGAGGATGTA CATGGGGGACCTATTTTGACTATCAATTGTTGTTACTTGTCTTCAAAATAGTGGGACTATCAGTTATTAAACTTACCTTT TAAATACAGTTTCCTGTTGTTTCGTATACAGTCTTGCCCTTTGCTGATGCTTTTGTCATGTGATTGTCATTGCAGGAGAT ATATCAAGAGAGAGTTGTCAATCAGCGCCAAGCAGAATTTAACAGATTGAATAGAGAAAGGGAGGAGCGGCTCTCTAAGA TTTTACAAACCAGGAGGCAGGATAGGGAGAAAGCGAGGAAGTTGAAGTACTATCTTCAGGTAGAAGAAGAGAGACAACAA AAATTGCGTGAGGAGGAAGAGGCTAGGAAGCGTGAAGGTAACTAATTACTATTACTGTCTGTTCAGGGACACTTCAATGC CTGATGTTGCTTTTTTCTCATCATTTTAATATTGAAATATTATTCTTAACATGTTTAATATGTTTTTTGTTCCACCAAAA TTCCCATTTTATTTAATTCACAATCTAATTTCTTATCTTCTATTTTGCCCTTACCCAACTCATGCTGTTCTTAAACTCCA GAGGCTGAGAGGAAAAAGAAGGAAGAGGCTGAACGCTTAGCAAAATTAGCTGAGATTAGTGAAAAACAGAGGCAGAGAGA GCGGGAGCTTGAAGAAAAAGAGAGGCAGAGGAAGGAAGCATTGTTGGGCAGACCAACCGAACCAGTTCTTAAGCCCGCTG AGCCTCCTGCTCGACCGTTGGAATCTGCACCTGCTGCAGCAGCTGCCGTTGCAAACCCAGGGAGATATGTTCCCAGACAC CGACGCCAAGGAGGTGAACCTGCAGCCGCTGCCGCTGCTGCTCCTCCTCCTCCGGAAACAGATCGTTGGAATAACAGTAG CAGCCGGCCGGATGGTGACAGGTGGCGCAGTGAGGATCGCAGAACCTCCTTTGGTTCTGGTGCTCCAAAGTCATCCACCA CATGGTCATCTTCCAGGAATCGTGATCGTTGA 

CDS sequence (LotjaGi1g1v0698800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTTCGTTTTTGAAACCTGAAAACGCCCTGAAAAGGGCGGAAGAGCTGATCAATGTGGGGCAGAAGCAGGATGCTTT GCAGACCCTCCATGATGTTATTACTTCGAAGAGATATAGGGCTTGGCAGAAGACCCTTGAGAGGATTATGTTCAAGTATG TTGAACTGTGCGTGGAGCTGCGCAAAGGGAGGTTTGCGAAGGATGGGCTTATCCAATATCGTATCATATGTCAGCAAGTG AATGTTAGCTCGCTGGAGGAGGTTATCAAACATTTCATGCACTTGTCGACTGAGAAAGCTGAACAAGCCCGTAGCCAGGC CCAGGCATTGGAAGAAGCGCTTGATGTTGATGATCTGGAGGCTGATAAGAGGCCTGAGGACTTGATGCTAAGCTATGTCA GTGGTGAGAAAGGAAAGGACAGATCTGATCGGGAGCTTGTCACCCCTTGGTTTAAATTTCTGTGGGAAACTTACAGGACA GTGCTTGAAATATTACGGAACAACTCAAAATTGGAAGCCTTGTATGCTATGACAGCCCATCGAGCTTTCCAGTTTTGTAA GCAATATAAACGTACGACAGAATTTCGAAGACTTTGTGAAATTATAAGAAACCATTTGGCCAATCTTAATAAATATCGGG ATCAACGAGACCGTCCTGATCTTTCTATTCCTGAAAGCTTGCAACTTTATCTTGACACCAGATTTGAGCAGCTGAAAATT GCCACTGAACTTGAACTCTGGCAGGAAGCCTTTCGATCAGTGGAAGATATCCACGGTCTAATGTGCATGGTCAAGAAAGT GCCCAAGGCATCCTTGATGGCTATTTACTATGTTAAGCTGACAGAAATATTTTGGGTATCATCAAGTCATCTGTATCATG CGTATGCATGGTTCAGGCTCTTTTTATTACAAAAGAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTGTTAGCT TCATCTGTTGTTCTGGCTGCTCTCTCAGTGCCTCCTCATGATCACACTCATGGTGCATCTCATTTGGAACTGGAGCATGA AAAAGAGAGAAATTTGAGGATGTCTAATCTCATTGGCTTTAATCTTGAAAACAAACCGGAGAGCAGAGAAGTGCTCTCAA GATCATCACTTCTTGCTGAACTGGCTTCGAAGGGTGTGATGTCATGTGTAACACAGGAAGTGAAGGACATTCACTATCTT TTGGAGCATGAATTTCTCCCTTCAGATCTTGCACAGAAAGTGCTGCCCTTGTTAACTAAATTCTCAAAACTAGGTGGTAA GCTTTCCACTGCTTCATCCATTCCAGAAGTGCATTTGTCACAGTATGTTCCGGCACTGGAAAAACTAGCGACCTTGAGGT TGCTACAGCAGGTTTCTAATGTGTACCAGACTATGAAGATTGAGACTTTATCTGGGATGATCCCCTTCTTTGAATTTTCT GTGGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAGTTTGTATCAATGAAAGTTGACCACATGAAAAATGTTGTAAT TTTTTGTAAAATGAGTCTTGAGTCTGATGGCTTAAGAGACCACTTGGCCAATTTTGCTGAGCGATTGAATAAGGCTAGAC AAATGATTTATCCTCCTGATAGGAAACCATCAAAACTTGGAGCTTTGCTTCCGACTTTGACTGAAGTCGTGGCCAAAGAG CACAAAAGGCTCCTTGCTCGAAAATCAATTATTGAGAAGAGGAAAGAAGAGCAAGAACGACAGCTTCTTGAAATGGAGCG TGAGGAGGAATCGAAGAGATTAAGACTGCAGAAAATAACAGAAGAGGCAGAACAAAGAAGGCTTGCGACTGAGTATGAGC AGAGGAAGAATCAAAGGATCCTTAGGGAGATAGAGGAAAGAGAAAATGAAGAAGCTCAAGCTTTACTTCAGGAAGCTGAA AAACGTATCAAAAAAAGGGGGAAAAAGCCAATGATTGAGGGGGAAAAAATTACCAAGCAGACATTGATGGAGTTGACTTT GACTGAACAACTCCGTGAAAGGCAGGAAATGGAAAAGAAGCTGCAAAAACTTGCTAAAACCATGGATCATTTGGAAAGAG CCAAAAGAGAAGAAGCTGCTCCGCTTATTGAAGCTGCATATCAACAGCGCCTAGTAGAAGAGAGGGTTCTTCATGAGCGT GAGCAACAACTAGAGGTTGAAGTAAGCAGACAGCGGCATGAGGGAGATCTTATTGAGAAGGAGAGGCTTTCTCGAATGAT GGGCAGTAAAGAGATATATCAAGAGAGAGTTGTCAATCAGCGCCAAGCAGAATTTAACAGATTGAATAGAGAAAGGGAGG AGCGGCTCTCTAAGATTTTACAAACCAGGAGGCAGGATAGGGAGAAAGCGAGGAAGTTGAAGTACTATCTTCAGGTAGAA GAAGAGAGACAACAAAAATTGCGTGAGGAGGAAGAGGCTAGGAAGCGTGAAGAGGCTGAGAGGAAAAAGAAGGAAGAGGC TGAACGCTTAGCAAAATTAGCTGAGATTAGTGAAAAACAGAGGCAGAGAGAGCGGGAGCTTGAAGAAAAAGAGAGGCAGA GGAAGGAAGCATTGTTGGGCAGACCAACCGAACCAGTTCTTAAGCCCGCTGAGCCTCCTGCTCGACCGTTGGAATCTGCA CCTGCTGCAGCAGCTGCCGTTGCAAACCCAGGGAGATATGTTCCCAGACACCGACGCCAAGGAGGTGAACCTGCAGCCGC TGCCGCTGCTGCTCCTCCTCCTCCGGAAACAGATCGTTGGAATAACAGTAGCAGCCGGCCGGATGGTGACAGGTGGCGCA GTGAGGATCGCAGAACCTCCTTTGGTTCTGGTGCTCCAAAGTCATCCACCACATGGTCATCTTCCAGGAATCGTGATCGT TGA 

Protein sequence (LotjaGi1g1v0698800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTSFLKPENALKRAEELINVGQKQDALQTLHDVITSKRYRAWQKTLERIMFKYVELCVELRKGRFAKDGLIQYRIICQQV NVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRT VLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSIPESLQLYLDTRFEQLKI ATELELWQEAFRSVEDIHGLMCMVKKVPKASLMAIYYVKLTEIFWVSSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLLA SSVVLAALSVPPHDHTHGASHLELEHEKERNLRMSNLIGFNLENKPESREVLSRSSLLAELASKGVMSCVTQEVKDIHYL LEHEFLPSDLAQKVLPLLTKFSKLGGKLSTASSIPEVHLSQYVPALEKLATLRLLQQVSNVYQTMKIETLSGMIPFFEFS VVEKISVDAVKQKFVSMKVDHMKNVVIFCKMSLESDGLRDHLANFAERLNKARQMIYPPDRKPSKLGALLPTLTEVVAKE HKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEERENEEAQALLQEAE KRIKKRGKKPMIEGEKITKQTLMELTLTEQLRERQEMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQQRLVEERVLHER EQQLEVEVSRQRHEGDLIEKERLSRMMGSKEIYQERVVNQRQAEFNRLNREREERLSKILQTRRQDREKARKLKYYLQVE EERQQKLREEEEARKREEAERKKKEEAERLAKLAEISEKQRQRERELEEKERQRKEALLGRPTEPVLKPAEPPARPLESA PAAAAAVANPGRYVPRHRRQGGEPAAAAAAAPPPPETDRWNNSSSRPDGDRWRSEDRRTSFGSGAPKSSTTWSSSRNRDR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Hamap 1 933 933 27.153
PANTHER 1 927 927 0.0
PANTHER 1 927 927 0.0
Coils 93 120 28 -
Gene3D 217 267 51 1.5E-25
Gene3D 268 343 76 7.4E-18
ProSiteProfiles 316 513 198 15.953
Gene3D 357 496 140 3.0E-13
Pfam 373 508 136 4.9E-18
SMART 441 532 92 1.3E-6
SMART 441 532 92 1.3E-6
Coils 561 602 42 -
Coils 615 649 35 -
Coils 667 697 31 -
Coils 796 856 61 -
MobiDBLite 806 861 56 -
MobiDBLite 806 960 155 -
MobiDBLite 923 940 18 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0698800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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