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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0702200 |
| Transcript ID | LotjaGi1g1v0702200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RmlC-like cupins superfamily protein; TAIR: AT3G04300.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q2SC73|Y5068_HAHCH UPF0345 protein HCH_05068; TrEMBL-Plants: tr|G7KYK0|G7KYK0_MEDTR RmlC-like cupins superfamily protein; Found in the gene: LotjaGi1g1v0702200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127056246..127057170) extracted from Lotus japonicus Gifu genome v1.2.
GTCTTGTCCTCTTTTATCACTGCACAAGATTCCTTCTTTTTCTATCCAAAATCCCACACACACTTTATATATAAATTCTC ACACAGTCTCTTCTGTTGTCAACTTCATTCTTAATTTCTCTTCCTAACTCACTCACTCCATATCCATGGCTTCTTCAGAT TCCAATTCAAACCTTAGAATCTCCATTGAGAGAAACCCCTCCCAGTCACGCCTAGCTGAATTGAACATCAAGTGCTGGCC AAAGTATGCTTCTTTCAATTTAATTTTTTTTTTCTCCTTTTTCTGAACTTAATTTCTGAAATTTGAATGATAACATAACT CTGTATTTATTTCTCTGTTTTCAAATGGATCAAGATGGGGTTGCTCTCCAGGGAAATACCAGTTGAAATTTGATGCAGAG GAAACATGCTATTTGTTGAAAGGGAAGGTGAAAGCATACCCAAAAGGGTCATCAGAATTTGTGGAGTTTGGAGCTGGAGA TCTTGTCACAATCCCAAAAGGACTCAGTTGCACTTGGGATGTATCTGTTGCAGTGGACAAGTACTACAAATTTGAATCAT CATCATCTTCTTCATCATCACCATCCTGCTAATGTTTGTCCAACAAGTTTAATTTTAGCTTTTAATTCATCAAATCATGT ATATCCATTGGAAATTTGTTCACAGAAAAGGTAGCCCTTTTCTTTAATTTATCTTGATTGATTTGTGTACACCATAACAG TAGTGAGACTCATATACATCTTCTTTTTCTTTATATCAATTTCTTCCAATTACATCATATTATATATCTCATTTATTATT TTTCTATCTACTCTTTTATTTAAAAAGTGTTACAGGAAAATTTGTTTAATTGTGCTTGTTTGGTTATGGAGTGATGGGAA TTGAATTGAGATGCTCTGACAGAGAGAGAGAGAAAGATGGAATGA
CDS sequence (LotjaGi1g1v0702200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCAGATTCCAATTCAAACCTTAGAATCTCCATTGAGAGAAACCCCTCCCAGTCACGCCTAGCTGAATTGAA CATCAAGTGCTGGCCAAAATGGGGTTGCTCTCCAGGGAAATACCAGTTGAAATTTGATGCAGAGGAAACATGCTATTTGT TGAAAGGGAAGGTGAAAGCATACCCAAAAGGGTCATCAGAATTTGTGGAGTTTGGAGCTGGAGATCTTGTCACAATCCCA AAAGGACTCAGTTGCACTTGGGATGTATCTGTTGCAGTGGACAAGTACTACAAATTTGAATCATCATCATCTTCTTCATC ATCACCATCCTGCTAA
Protein sequence (LotjaGi1g1v0702200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSDSNSNLRISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGAGDLVTIP KGLSCTWDVSVAVDKYYKFESSSSSSSSPSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 103 | 101 | 6.6E-66 | – | |
| PANTHER | 3 | 103 | 101 | 6.6E-66 | – | |
| Gene3D | 3 | 99 | 97 | 9.3E-34 | ||
| SUPERFAMILY | 21 | 97 | 77 | 1.02E-10 | ||
| Pfam | 24 | 97 | 74 | 1.7E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0702200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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