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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0702300 |
| Transcript ID | LotjaGi1g1v0702300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|A0A0B2PDF2|A0A0B2PDF2_GLYSO RNA polymerase-associated protein RTF1 like; Found in the gene: LotjaGi1g1v0702300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127063599..127066310) extracted from Lotus japonicus Gifu genome v1.2.
GCTGAAACGAGTCCAGTCAGTGTACAAGTGCGCCAATTCCTCTCTCTCTCAGTCGGAGACACCGTCAGGGTTTCTTAGGG TTCTTCTGCTCCGCCGCGAACTAACCAACCAACCTCCACATTGCTCCGCCGTCATCTCCAACCGATTTCTTCACCGCTTT TCATTCTCCTTTCACTGTAAGTCTTCACTATCTCACTGTAATAATGCACACTGAAATTTGTAATGTACAATAGAATCATA TTTCAAATGTGCCATTGCTTGTTACCTATGCTGATTATTCTGTTCACTCTCTTCAATTTTTGAATGCTTCTGAATTTGAA TGTGACTTTGATTGATTATGAATTCCTGTTGTACAAACAAACAAACAGGGTTGTTATTTGTTAATTTCTTGTCATGGCGG ATTTGGAAAATTTGCTTCTCGAGGCTGCGGGGAGGAACCGGCACTCTCTCCCGCCTTCGAGGCGAGGCGGTGAATCTGAT GGTGGGAGTGATTCTGATTCTGGGGGTGATGATGATGATTCGGATGATGAGCGGAGTTATCGGGCCGGAAAGCACTCGGC CATGCAGGTTCCTTTGAAAAAGAGATTGGATTTGACTGAGAGAGATGATCGTGATGGCGATGGTGATGGTTTGGGTGGAA GTAGCAGTGATGAGTCTGATGTTGGTGATGATCTTTACAAGAATGATGGTGATAGGAAGAAGCTTTCTGAGATGACTGAG CTGCAAAGGGAGATGATTTTGTCTGATAGGGCTAGCAAGAAGGATGATAAAGGTTTGTTGGTGAAGTTAACACAGAATCG CGGCGATAAGGGGAAGACAAGAAGTGCATCGAGGATGGAGACTCCACCTCCCTCATTGTCGTCCGGTAGGTCTGCTGACA GGTCTGCTGCCAAGGATGATGCGTTGAATGAGTTGCGTGCGAAGCGGTCGAGGCGGCTGGGTTCCGAAGCACAGGTCACT GTAAGTGAGTTGTCTAGAAGTTCAGGGTTGTCACCAAAGCGCAAACCTTTCAGTATTAGCGGCCCGAGCCGTAGTGAAAG TGAAGGCAGCTCCAGCAGTGATGAGGAGGGTTTGGCTGGAGGTGGAGATGGAGGGGTTATTGACAGCGATGATGACAAGA TAGTATCTGGATTCGGAGGGCCTTCGTTTGAGGATATCAAGGAAATCACCATTCCTAGGTCGAAGCTTGCAAAATGGTTC ATGGAGCCTTTCTTTGAGGAGTTGATTGTTGGTTGTTTTGTGAGAGTTGGTATTGGTAGGTCCAAATCCGGGCCTATCTA CAGGCTCTGCATGGTGAAAAATGTTGATGCCTCGGATCCTGACCGGCTGTATAAATTTGAGAATAGGAGTACATACAAGT ACTTGAATGTTGTCTGGGGAAATGAAACTTCTGCTGCAAGGTGGCAAATGGCTATGGTTAGCGATTCTGCTCCGCACGAG GAGGAGTTTAAGCAGTGGGTTAAGGAAGTAGAGCGAAGTGGTGGACACATGCTGATGAAGAAAGATGTGCTGGAGAAAAA ACAAGATATTCAAAAGATCAACTCATTTGTTTACTCAGCAGCTACTGTGAAGCAGATGTTACAAGAGAAAAAATCTGCCT CATCGAGACGGATAAATGTTGCAGCCGAGAAGGATCGGTTGAGGTGGGAAATGGAATTAGCACAAAGTAAGCATGATGAA GCTGCAGTGGAGAGGATCAAGACAAGACTGGAAGAATTGGAGGCGTCCCGGAAAGCTCAGGAGAAGGATGCCAAGGCTTT AAGGCTTTCTGAAATGAACAGAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTCAATTGAAGCGAGCAAACATGGATT TGAAAGCAGGGGAGGCAGGTTATGATCCTTTTTCAAGGAGATGGACTAGATCAAGGAACTACTATGTTTCAAAACCTGGT GAAGAAGCTGCAGCTGGGAGTACTATTGCTGATGCCGCTGCAGTGGCTGATACCGGAAGCAAGGGGACAAAAGCAGCAGT GGTAGTGGAGACTGGCATGGTGGCTACTGCTGCAGCTTTGGAAGCTGCTGCTGATGCTGGGAAGTTGGTAGACACAAGCG CTCCGGTGGATCAAGGGACAGAGTCAAATGAGCTGCACAATTTTGAGCTGCCAATATCATTATCCGCACTCCAAAAGTTT GGTGGTGCCAAAGGAGTTTATGCAGCATTTATGGCCAGAAAACAAAGAATTGAAGCAGTTGCTGGACTTCAAGTCCCAGA AAATGATGGCAAGGTGCATCCGCTGACATTAACAGTTAGTGATTACAAGAGAAGAAGAGGGCTTCTTTGAAAGGTGTTAA AGCAACAATTTTCATCAGCTCAACTCTCTTCTAAGATGAAATCGGTTTATATTTTGTCTGTGAATAACAAAATTTTACCT TGAACCTTTTCAATTTATCATGGAGTTTTCAGTTCCTTTTTGCTTATACAAAATATAGAGAAAATTGAAAGAGTGCCGGA TATTTGCATAGAAAGTCAGGTTTCGTGACCAAATATTGTTAAGTATATTTTCTTGCAGAGTTTGTTTGTTCTCAGTTCTC ACTCTACACTATTTCATGTGCTTGAAATGTTTTATAACTATATCATGTGCTTGAAATGTTTTAAAAGGGATATCAACTTG GTTCTTATTGGCTTTAGGTTACTTAGAATTTGTTTGGGAGAAGGTTTTTGTCTGGAAGAATAGAAAGTGAAG
CDS sequence (LotjaGi1g1v0702300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGATTTGGAAAATTTGCTTCTCGAGGCTGCGGGGAGGAACCGGCACTCTCTCCCGCCTTCGAGGCGAGGCGGTGA ATCTGATGGTGGGAGTGATTCTGATTCTGGGGGTGATGATGATGATTCGGATGATGAGCGGAGTTATCGGGCCGGAAAGC ACTCGGCCATGCAGGTTCCTTTGAAAAAGAGATTGGATTTGACTGAGAGAGATGATCGTGATGGCGATGGTGATGGTTTG GGTGGAAGTAGCAGTGATGAGTCTGATGTTGGTGATGATCTTTACAAGAATGATGGTGATAGGAAGAAGCTTTCTGAGAT GACTGAGCTGCAAAGGGAGATGATTTTGTCTGATAGGGCTAGCAAGAAGGATGATAAAGGTTTGTTGGTGAAGTTAACAC AGAATCGCGGCGATAAGGGGAAGACAAGAAGTGCATCGAGGATGGAGACTCCACCTCCCTCATTGTCGTCCGGTAGGTCT GCTGACAGGTCTGCTGCCAAGGATGATGCGTTGAATGAGTTGCGTGCGAAGCGGTCGAGGCGGCTGGGTTCCGAAGCACA GGTCACTGTAAGTGAGTTGTCTAGAAGTTCAGGGTTGTCACCAAAGCGCAAACCTTTCAGTATTAGCGGCCCGAGCCGTA GTGAAAGTGAAGGCAGCTCCAGCAGTGATGAGGAGGGTTTGGCTGGAGGTGGAGATGGAGGGGTTATTGACAGCGATGAT GACAAGATAGTATCTGGATTCGGAGGGCCTTCGTTTGAGGATATCAAGGAAATCACCATTCCTAGGTCGAAGCTTGCAAA ATGGTTCATGGAGCCTTTCTTTGAGGAGTTGATTGTTGGTTGTTTTGTGAGAGTTGGTATTGGTAGGTCCAAATCCGGGC CTATCTACAGGCTCTGCATGGTGAAAAATGTTGATGCCTCGGATCCTGACCGGCTGTATAAATTTGAGAATAGGAGTACA TACAAGTACTTGAATGTTGTCTGGGGAAATGAAACTTCTGCTGCAAGGTGGCAAATGGCTATGGTTAGCGATTCTGCTCC GCACGAGGAGGAGTTTAAGCAGTGGGTTAAGGAAGTAGAGCGAAGTGGTGGACACATGCTGATGAAGAAAGATGTGCTGG AGAAAAAACAAGATATTCAAAAGATCAACTCATTTGTTTACTCAGCAGCTACTGTGAAGCAGATGTTACAAGAGAAAAAA TCTGCCTCATCGAGACGGATAAATGTTGCAGCCGAGAAGGATCGGTTGAGGTGGGAAATGGAATTAGCACAAAGTAAGCA TGATGAAGCTGCAGTGGAGAGGATCAAGACAAGACTGGAAGAATTGGAGGCGTCCCGGAAAGCTCAGGAGAAGGATGCCA AGGCTTTAAGGCTTTCTGAAATGAACAGAAAGAACAGGTTTGAGAACTTCAAAAATGCTTCTCAATTGAAGCGAGCAAAC ATGGATTTGAAAGCAGGGGAGGCAGGTTATGATCCTTTTTCAAGGAGATGGACTAGATCAAGGAACTACTATGTTTCAAA ACCTGGTGAAGAAGCTGCAGCTGGGAGTACTATTGCTGATGCCGCTGCAGTGGCTGATACCGGAAGCAAGGGGACAAAAG CAGCAGTGGTAGTGGAGACTGGCATGGTGGCTACTGCTGCAGCTTTGGAAGCTGCTGCTGATGCTGGGAAGTTGGTAGAC ACAAGCGCTCCGGTGGATCAAGGGACAGAGTCAAATGAGCTGCACAATTTTGAGCTGCCAATATCATTATCCGCACTCCA AAAGTTTGGTGGTGCCAAAGGAGTTTATGCAGCATTTATGGCCAGAAAACAAAGAATTGAAGCAGTTGCTGGACTTCAAG TCCCAGAAAATGATGGCAAGGTGCATCCGCTGACATTAACAGTTAGTGATTACAAGAGAAGAAGAGGGCTTCTTTGA
Protein sequence (LotjaGi1g1v0702300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADLENLLLEAAGRNRHSLPPSRRGGESDGGSDSDSGGDDDDSDDERSYRAGKHSAMQVPLKKRLDLTERDDRDGDGDGL GGSSSDESDVGDDLYKNDGDRKKLSEMTELQREMILSDRASKKDDKGLLVKLTQNRGDKGKTRSASRMETPPPSLSSGRS ADRSAAKDDALNELRAKRSRRLGSEAQVTVSELSRSSGLSPKRKPFSISGPSRSESEGSSSSDEEGLAGGGDGGVIDSDD DKIVSGFGGPSFEDIKEITIPRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRLYKFENRST YKYLNVVWGNETSAARWQMAMVSDSAPHEEEFKQWVKEVERSGGHMLMKKDVLEKKQDIQKINSFVYSAATVKQMLQEKK SASSRRINVAAEKDRLRWEMELAQSKHDEAAVERIKTRLEELEASRKAQEKDAKALRLSEMNRKNRFENFKNASQLKRAN MDLKAGEAGYDPFSRRWTRSRNYYVSKPGEEAAAGSTIADAAAVADTGSKGTKAAVVVETGMVATAAALEAAADAGKLVD TSAPVDQGTESNELHNFELPISLSALQKFGGAKGVYAAFMARKQRIEAVAGLQVPENDGKVHPLTLTVSDYKRRRGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 240 | 240 | - | – | |
| PANTHER | 1 | 638 | 638 | 5.5E-215 | – | |
| PANTHER | 1 | 638 | 638 | 5.5E-215 | – | |
| MobiDBLite | 59 | 80 | 22 | - | – | |
| MobiDBLite | 89 | 145 | 57 | - | – | |
| MobiDBLite | 147 | 161 | 15 | - | – | |
| MobiDBLite | 162 | 182 | 21 | - | – | |
| MobiDBLite | 184 | 223 | 40 | - | – | |
| SMART | 249 | 361 | 113 | 9.8E-41 | ||
| ProSiteProfiles | 249 | 384 | 136 | 34.317 | ||
| Gene3D | 250 | 382 | 133 | 3.5E-39 | ||
| SUPERFAMILY | 251 | 381 | 131 | 2.62E-33 | ||
| Pfam | 254 | 359 | 106 | 1.1E-29 | ||
| Coils | 425 | 459 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0702300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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