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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036128
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.388s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0563100.2
n.a. Zinc finger CCCH domain protein; TAIR: AT2G16485.2 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A0B2RGJ5|A0A0B2RGJ5_GLYSO Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100 LjG1.1_chr1 109564605 109577030 -
3 domain predictions
1 GO term
LotjaGi1g1v0563100.3
n.a. Zinc finger CCCH domain protein; TAIR: AT2G16485.1 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A151TCZ6|A0A151TCZ6_CAJCA Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100 LjG1.1_chr1 109568623 109573171 -
3 domain predictions
1 GO term
LotjaGi1g1v0702300.1
n.a. RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|A0A0B2PDF2|A0A0B2PDF2_GLYSO RNA polymerase-associated protein RTF1 like; Found in the gene: LotjaGi1g1v0702300 LjG1.1_chr1 127063599 127066310 -
3 domain predictions
1 GO term
LotjaGi1g1v0748600.1
n.a. RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|V7CYR4|V7CYR4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0748600 LjG1.1_chr1 132119242 132122611 +
3 domain predictions
1 GO term
LotjaGi1g1v0784500.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.2 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7KGZ1|K7KGZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0784500 LjG1.1_chr1 135719097 135726390 +
3 domain predictions
1 GO term
LotjaGi2g1v0168800_LC.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|V7C2T6|V7C2T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0168800_LC LjG1.1_chr2 58098227 58108775 -
3 domain predictions
1 GO term
LotjaGi2g1v0168800_LC.2
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|V7C2T6|V7C2T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0168800_LC LjG1.1_chr2 58098432 58108725 -
3 domain predictions
1 GO term
LotjaGi2g1v0384000.1
n.a. Zinc finger CCCH domain protein; TAIR: AT3G51120.1 zinc finger CCCH domain-containing protein 44; Swiss-Prot: sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr|G7KGD4|G7KGD4_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0384000 LjG1.1_chr2 88026227 88032863 +
3 domain predictions
1 GO term
LotjaGi2g1v0451800.1
n.a. Zinc knuckle (CCHC-type) family protein, putative; TAIR: AT5G43630.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homolog; TrEMBL-Plants: tr|K7K5H3|K7K5H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0451800 LjG1.1_chr2 94498338 94506937 +
3 domain predictions
1 GO term
LotjaGi2g1v0451800.3
n.a. Zinc knuckle (CCHC-type) family protein, putative; TAIR: AT5G43630.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homolog; TrEMBL-Plants: tr|K7K5H3|K7K5H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0451800 LjG1.1_chr2 94498338 94506937 +
3 domain predictions
1 GO term
LotjaGi2g1v0451800.5
n.a. Zinc knuckle (CCHC-type) family protein, putative; TAIR: AT5G43630.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homolog; TrEMBL-Plants: tr|K7K5H3|K7K5H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0451800 LjG1.1_chr2 94498465 94506370 +
3 domain predictions
1 GO term
LotjaGi4g1v0053300.1
n.a. RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|K7L2P2|K7L2P2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0053300 LjG1.1_chr4 6450760 6454676 -
3 domain predictions
1 GO term
LotjaGi4g1v0053300.2
n.a. RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|K7L2P2|K7L2P2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0053300 LjG1.1_chr4 6451770 6453740 -
3 domain predictions
1 GO term
LotjaGi6g1v0050200.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G63700.1 zinc ion binding / DNA binding protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7LRF3|K7LRF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050200 LjG1.1_chr6 9010514 9019090 -
3 domain predictions
1 GO term
LotjaGi6g1v0050300_LC.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|A0A151UA03|A0A151UA03_CAJCA Uncharacterized protein At5g08430; Found in the gene: LotjaGi6g1v0050300_LC LjG1.1_chr6 9032460 9045218 -
3 domain predictions
1 GO term
LotjaGi6g1v0050300_LC.3
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|A0A151UA03|A0A151UA03_CAJCA Uncharacterized protein At5g08430; Found in the gene: LotjaGi6g1v0050300_LC LjG1.1_chr6 9032518 9045170 -
3 domain predictions
1 GO term
LotjaGi6g1v0050400.1
n.a. Zinc finger CCCH domain protein; TAIR: AT5G63700.1 zinc ion binding / DNA binding protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7LRE8|K7LRE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050400 LjG1.1_chr6 9047841 9056267 -
3 domain predictions
1 GO term
LotjaGi6g1v0050400.2
n.a. Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|A0A0S3S5P0|A0A0S3S5P0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050400 LjG1.1_chr6 9048458 9056299 -
3 domain predictions
1 GO term