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PS51360

Source: ProSiteProfiles

Description

Plus3 domain profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 27

Transcript Name Description Predicted domains Domain count
Lj0g3v0127099.1
– PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max] gi|356495372|ref|XP_003516552.1|
Domains
26
Lj0g3v0127099.2
– PREDICTED: zinc finger CCCH domain-containing protein 44-like [Cicer arietinum] gi|502161282|ref|XP_004512106.1|
Domains
36
Lj1g3v0116660.2
– Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] gi|15239925|ref|NP_199176.1|
Domains
12
Lj1g3v3357590.1
– Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1|
Domains
35
Lj1g3v3357590.2
– Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula] gi|357467443|ref|XP_003604006.1|
Domains
34
Lj1g3v4528600.1
– PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine max] gi|356521329|ref|XP_003529309.1|
Domains
10
Lj2g3v0547900.1
– Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357498959|ref|XP_003619768.1|
Domains
20
Lj2g3v0547900.2
– Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357498959|ref|XP_003619768.1|
Domains
20
Lj4g3v0450520.1
– PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine max] gi|356521329|ref|XP_003529309.1|
Domains
10
Lj4g3v0450530.1
– PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine max] gi|356521329|ref|XP_003529309.1|
Domains
10
Lj6g3v0365860.2
– PREDICTED: zinc finger CCCH domain-containing protein 44-like [Fragaria vesca subsp]. vesca] gi|470138342|ref|XP_004304916.1|
Domains
11
Lj6g3v0365860.3
– Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|357460663|ref|XP_003600613.1|
Domains
20
LotjaGi1g1v0563100.2
– Zinc finger CCCH domain protein; TAIR: AT2G16485.2 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A0B2RGJ5|A0A0B2RGJ5_GLYSO Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100
Domains
40
LotjaGi1g1v0563100.3
– Zinc finger CCCH domain protein; TAIR: AT2G16485.1 GW repeat- and PHD finger-containing protein NERD; Swiss-Prot: sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19; TrEMBL-Plants: tr|A0A151TCZ6|A0A151TCZ6_CAJCA Zinc finger CCCH domain-containing protein 44; Found in the gene: LotjaGi1g1v0563100
Domains
18
LotjaGi1g1v0702300.1
– RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|A0A0B2PDF2|A0A0B2PDF2_GLYSO RNA polymerase-associated protein RTF1 like; Found in the gene: LotjaGi1g1v0702300
Domains
11
LotjaGi1g1v0748600.1
– RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|V7CYR4|V7CYR4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0748600
Domains
11
LotjaGi1g1v0784500.1
– Zinc finger CCCH domain protein; TAIR: AT5G08430.2 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7KGZ1|K7KGZ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0784500
Domains
28
LotjaGi2g1v0168800_LC.1
– Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|V7C2T6|V7C2T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0168800_LC
Domains
25
LotjaGi2g1v0168800_LC.2
– Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|V7C2T6|V7C2T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0168800_LC
Domains
25
LotjaGi2g1v0384000.1
– Zinc finger CCCH domain protein; TAIR: AT3G51120.1 zinc finger CCCH domain-containing protein 44; Swiss-Prot: sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44; TrEMBL-Plants: tr|G7KGD4|G7KGD4_MEDTR Zinc finger CCCH domain protein; Found in the gene: LotjaGi2g1v0384000
Domains
41
LotjaGi4g1v0053300.1
– RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|K7L2P2|K7L2P2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0053300
Domains
11
LotjaGi4g1v0053300.2
– RNA polymerase-associated protein RTF1 like; TAIR: AT1G61040.1 plus-3 domain-containing protein; Swiss-Prot: sp|Q9C950|VIP5_ARATH Protein RTF1 homolog; TrEMBL-Plants: tr|K7L2P2|K7L2P2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0053300
Domains
11
LotjaGi6g1v0050200.1
– Zinc finger CCCH domain protein; TAIR: AT5G63700.1 zinc ion binding / DNA binding protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7LRF3|K7LRF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050200
Domains
28
LotjaGi6g1v0050300_LC.1
– Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|A0A151UA03|A0A151UA03_CAJCA Uncharacterized protein At5g08430; Found in the gene: LotjaGi6g1v0050300_LC
Domains
14
LotjaGi6g1v0050300_LC.3
– Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|A0A151UA03|A0A151UA03_CAJCA Uncharacterized protein At5g08430; Found in the gene: LotjaGi6g1v0050300_LC
Domains
15
LotjaGi6g1v0050400.1
– Zinc finger CCCH domain protein; TAIR: AT5G63700.1 zinc ion binding / DNA binding protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|K7LRE8|K7LRE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050400
Domains
24
LotjaGi6g1v0050400.2
– Zinc finger CCCH domain protein; TAIR: AT5G08430.1 SWIB/MDM2 and Plus-3 and GYF domain-containing protein; Swiss-Prot: sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430; TrEMBL-Plants: tr|A0A0S3S5P0|A0A0S3S5P0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0050400
Domains
8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF159042 SUPERFAMILY 1 3.70