Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0705200 |
| Transcript ID | LotjaGi1g1v0705200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7G5U0|A0A1J7G5U0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0705200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127368345..127371681) extracted from Lotus japonicus Gifu genome v1.2.
CGAGAAACCTCAAGAGATGTGAGTGTATTTTATTTTTTTAGTATTTAACATTTTAAAAAAATCAACATATTTTATAACAA TAAAAACTTAATGCTTAAGTCACTTTTGTTAATATATATAAATAGATACTTTGAGAGAAAATATAGATTGTAAAAAATAT TGAAAGGAAAGCAGCAGGGGAAACTCAAATGGAGCTGGGAGATGATCAAAACGACGCTGTATCATCACCTCCCTCCACAG TGACTTTAACCTCACTTTCAATTTCAGACTCTTCCACCGGCGACATACATCACGCGCCGCCGCCGCAGCCGCAGCATCCA ATCTTTCCGGTCGAGATCGTGGAAGAAATCATAATCAGGTTTCCGGTGAAGTTCCTCTCGCAGCTCCGGTGCGTCTGCAA GTCCTGGAACGCCCTGATTTCCGATCCCAAATTCGCCAGAAGGCACCTTCGCCGGCTCAACCGCCGCATCCTCCTCGTAC ACTTGAGGAACCGCTCACATGAAAACCATTTCGTGTCTTACCCGCTCACCTCCGTTCTCAAGCCTGTGACCACCGGTGGT ACACAAATCGATAGCCCTCTGGATTATTTAATCATTGGGTCCTGCGATGGCATCATCTGTTGTTTCAAGTTCAGTCATAA ATCTGGTTATTCCTTTGTTGTCTGGAACCCTTCAATTCGGAAATTCTGGGAATTGCCACCTTTGGAAAATCTACTGCTAG AGGATTGTGATGCTGATGCACATACATTTCCTTCCTATGGGTTTGGTTACGATCATCTCTCTGATAGTTTCAAGGTGATT GTGATCTTTTACTATGTATGTCTTGCAGAAACTCATGTCATGGTTCATACTTTGGGCTCCAATTCTTGGAGAAGGATTCA GGATTCACCTTGTATCCCTTATTGGGGCTGTTGTCATAATGGAAAATTTGTGAGCGGTGCAGTTAATTGGTTGACAGGTG ATGGTGAAGATGGTTTCAATCGGGGCCACGGTATTATTTCTCTTGATTTGGGGAAAGAATCGTATCAAGAATTTTTGCAG CCTGATTATGGAATTGAGGTTGACTACTTGACCATGGGTGTCATGAGAGATTGCTTGTGCTTACTTGCTAATTCAGATGT TTGGGTTATGAAGGAGTATGGAAATAATGATTCCTGGACTAAATTGTTCAGTTTGCCTTCTGACTTCTGGCATGCATGTT GTCCCTATATTCTGGGTTGCAATTCACTTTGTGTTCTTGAGGATGATGAAACAATATTCTTCCAGTATAGGAATTTAGAT ATTTATAATTATAAAAGTGGCACTTTTAGGAGTTCTGCTCTAGAATACAAACCTGGTTTGATCGAAGGTATGTACTTTGG TATCTAAGATATGTATGTTGTGATTGAGAGTTTGATTTCACCTTTTCCTCAAAATTAGAAGGTAGTAGATTATGTGTCAC TTTTGCCGTTTTAAGTTCTTGAAGAATGTATCAACTACCAATTGACTATTATTAATTTTGCATATCCATTTTCCCATTGA TATCACCCTTCAAGCAAGTTCTGTTGTTTACATTTATATATTCAAATGCTAGTTGTCGATGCATGTGTATTTTCAATTTT GCTATGAAGTCTAGTAGGGAACCTTGTGATGCTGATATTTAGCGGCTTTCCTGTCATGATGCCTGTGTTGTGTTTTGTTA GAGCTTTGGCCTCTCGGTTTTATGCTTGCTGTCATGCCTGCAAACTATGTTGCGTCTTGTTTTATGGGGGTGCCATATGC TACCTGCACTAATCAGTTCTGGCCCTTCTAAATCTTTGCTTTGGAGGGCTACTGGACTGGCTAGGCTTCATTTATGTTTT GAGCCACTGTTTTTTTTTCTCCTGAATGATGCTGCCATTGGTTTACTGGCTTTCTCAGCATATGTTTTGGGCTGCTGATG ATGTTGTGCTTGGAGACTGTTATTGGCTCAAGGGACTAGTAGGTATCTGTTTTTGTTTTTCTTCCACTTCTTTTGGTCGT TGTAGGTATGTATCTTCGTTTGGCTCACTTAAGAGAGTCTTGTTACCAAGTTTATTGCTCATCAATATATTATCTTTCTT CTTAAAAAAAAATACATTTCAGCATGTGTCAAATGAGTTTGAGTGCTTATGTTAGCCTTTAGGTCCTTCACTTTGATATT TTAGTTATATTTATCGCTTGTCCATTTTTTCCCTTTATTCCATTGAGCTTAATGACTGAATCACTATGTCAAGGGGTGAG ATTTTCTTTTCTCCTTTTATTTTTTATGATCTTCAGGGTCAAATCCAATATGGTGATTATTGAATTCACTTAAAAATTGT TTCAGATTAAAAAATAATAATTTTTAGATGTCTAAAAAAGATATTATTTTTTAGAAATTTTTAGAAAAACATAAGCTCAT TTGTGTTTATTTGCACGAATTAAAATTACTTTTTTTCTCTCTCTCATTTATCATAAATTTTCCTGATAAACTAATTGAAG TAGTTTTTTAAAATACAGTAGAAACTCTTTAAATTAATAATGTCAGGACCGGAGAAATTTATTAATTTAGAGTTATTAAT TTATCGATAAATTAATAATTATTAATTTAAAGAGTTTTTAAGTAATTATACTGTTTAGGGGTGCAGATCTCGATTAACTA AAAGCAGGAGAGTTCTCTGCTAGGGTTCTGGAATCTAGTCCATCCAGCGGCGCAGCCACTAGGGACGGCGGCGGCCCGAA GGCAGGCTCAGGCTTCCTTCCCTGTCTTGTTCGCGTCTTCCTCCCCTGCTAGTTTGCCCGTGCTGTGTCTGTTCTGTGTT CCCAGGTTCACGACTCACGCCGCTCTTCTTCTGGGCGGCGGTCGTGACTTCCCTGCGCGAGGCCCTTCTTCTCTTTCTTT TCTGGACCCTGTTCTGCCCCCAATCGCAACTCCTTCGATCTCCTTCCTCTTGGCTGCTCTGTTTCGATTGTTTCTCTTCG GTGGATACCCGATTGTGGCTCTTGTTCTCTGTGCTGTTCAGGCTTGTCTTTTATGTCGTTAGTGGAAAGTTTTGTTGCTG CTGTAGGGTCTGAAGAGGATGGAGGTGATTGTGAGGATGATGTCGCTGATGATGGTGGGGCGATCTTTAGCCAAGATTCC TCTGGGGTAAGGAGGTCATGTGTTTCGCTTCCCTAGGGTGGGTTTTTGGTGACTTGGTGTTTCTGATTGAATCTGGTTGT TTTTCCTTTGGTGTTTGGTGTGGTAGTATGCCTTTGGGTTTTTGTAATCTTCTGATCTTGAGGTTTTTGGTCCTGTAGTT TTTTAGGTTTTTAGGTTGGCGTTCTCTGAGTTGGGTCTCTTTCTTTTTGGTTTGGTG
CDS sequence (LotjaGi1g1v0705200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTGGGAGATGATCAAAACGACGCTGTATCATCACCTCCCTCCACAGTGACTTTAACCTCACTTTCAATTTCAGA CTCTTCCACCGGCGACATACATCACGCGCCGCCGCCGCAGCCGCAGCATCCAATCTTTCCGGTCGAGATCGTGGAAGAAA TCATAATCAGGTTTCCGGTGAAGTTCCTCTCGCAGCTCCGGTGCGTCTGCAAGTCCTGGAACGCCCTGATTTCCGATCCC AAATTCGCCAGAAGGCACCTTCGCCGGCTCAACCGCCGCATCCTCCTCGTACACTTGAGGAACCGCTCACATGAAAACCA TTTCGTGTCTTACCCGCTCACCTCCGTTCTCAAGCCTGTGACCACCGGTGGTACACAAATCGATAGCCCTCTGGATTATT TAATCATTGGGTCCTGCGATGGCATCATCTGTTGTTTCAAGTTCAGTCATAAATCTGGTTATTCCTTTGTTGTCTGGAAC CCTTCAATTCGGAAATTCTGGGAATTGCCACCTTTGGAAAATCTACTGCTAGAGGATTGTGATGCTGATGCACATACATT TCCTTCCTATGGGTTTGGTTACGATCATCTCTCTGATAGTTTCAAGGTGATTGTGATCTTTTACTATGTATGTCTTGCAG AAACTCATGTCATGGTTCATACTTTGGGCTCCAATTCTTGGAGAAGGATTCAGGATTCACCTTGTATCCCTTATTGGGGC TGTTGTCATAATGGAAAATTTGTGAGCGGTGCAGTTAATTGGTTGACAGGTGATGGTGAAGATGGTTTCAATCGGGGCCA CGGTATTATTTCTCTTGATTTGGGGAAAGAATCGTATCAAGAATTTTTGCAGCCTGATTATGGAATTGAGGTTGACTACT TGACCATGGGTGTCATGAGAGATTGCTTGTGCTTACTTGCTAATTCAGATGTTTGGGTTATGAAGGAGTATGGAAATAAT GATTCCTGGACTAAATTGTTCAGTTTGCCTTCTGACTTCTGGCATGCATGTTGTCCCTATATTCTGGGTTGCAATTCACT TTGTGTTCTTGAGGATGATGAAACAATATTCTTCCAGTATAGGAATTTAGATATTTATAATTATAAAAGTGGCACTTTTA GGAGTTCTGCTCTAGAATACAAACCTGGTTTGATCGAAGGTATGTACTTTGGTATCTAA
Protein sequence (LotjaGi1g1v0705200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELGDDQNDAVSSPPSTVTLTSLSISDSSTGDIHHAPPPQPQHPIFPVEIVEEIIIRFPVKFLSQLRCVCKSWNALISDP KFARRHLRRLNRRILLVHLRNRSHENHFVSYPLTSVLKPVTTGGTQIDSPLDYLIIGSCDGIICCFKFSHKSGYSFVVWN PSIRKFWELPPLENLLLEDCDADAHTFPSYGFGYDHLSDSFKVIVIFYYVCLAETHVMVHTLGSNSWRRIQDSPCIPYWG CCHNGKFVSGAVNWLTGDGEDGFNRGHGIISLDLGKESYQEFLQPDYGIEVDYLTMGVMRDCLCLLANSDVWVMKEYGNN DSWTKLFSLPSDFWHACCPYILGCNSLCVLEDDETIFFQYRNLDIYNYKSGTFRSSALEYKPGLIEGMYFGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| SUPERFAMILY | 39 | 113 | 75 | 7.72E-13 | ||
| Gene3D | 43 | 116 | 74 | 8.3E-7 | – | |
| SMART | 46 | 86 | 41 | 2.3E-5 | ||
| Pfam | 47 | 86 | 40 | 4.2E-7 | ||
| PANTHER | 49 | 379 | 331 | 4.8E-57 | – | |
| PANTHER | 49 | 379 | 331 | 4.8E-57 | – | |
| TIGRFAM | 137 | 341 | 205 | 4.2E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0705200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…