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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0708900 |
| Transcript ID | LotjaGi1g1v0708900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TOM1-like protein 2; TAIR: AT1G06210.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q54GH3|TOM1_DICDI Target of Myb protein 1; TrEMBL-Plants: tr|I1N9R3|I1N9R3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0708900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127710757..127714332) extracted from Lotus japonicus Gifu genome v1.2.
GGGTAAACCAAACAGGCCCAAGATACTGATAAGTTCATATACTTAATCGCTTGGATAAAAGGTCGGTCAACTTAGTCACT ATGGTCATCTACAACATCGGTCAAGTCCAATATTTAACACAACATCAAAAGTGTGTATTTCTTTCTATAGAGACAAACTT CTTAGTATTCAATATCAACACTTTTCGAGACCAATTTAACCATTCACTACGTCCGCGATAATCCATCACCACCACAAGGC TCCAATCAAGCCACGTAATCATCATTCATCATCAAACACTCACAAATCCCTCTCTTTCATATTCAGTTGAATCTTCTAAA GTTGAACTTTCCACTCTCTTCATTCTACAGTTACAACCTTCATCTAATCTAGGGTTCATCAATTTCAGGAAAAACTGTTT TGTCTGAACAGAAATGGACAAGCTGAACCTAGCTCAACTCGGCGAGAGGTTGAAGACGGGTGGGGCCCAGATGGGTCGGA TCGTGTCCGGCAAGGTGAAGGATCTCCTCGCCGCGCCGACGCCGGAATCCAAGATGGTCGACGAAGCCACGCTGGAGACG CTGGAGGAGCCGAATTGGGGCATGAATCTGAGGATATGCGGGATGATCAACAGCGACGAGTTCAACGGTTCGGAGGTGGT GAAGGCAATCAAGAGGAAGATCAATCACAAGAGCCCTGTTGTTCAGAGACTCAGTCTTGATTTGCTGGAAACGTGTGCTA TGAACTGTGAGAAGGTGTTCTCTGAAGTGGCTTCTGAGAAGCTTCTTGAGGACATGGTTCGGTTGATTGATAACGTGGAA GCGTATCATGAGAATCGGAGAAGGGCTTTTCAGTTGGTTAAGGCTTGGGGTGAGTCTGAGGATCTTGCTTATCTTCCTGT GTTTCGTCAAACTTATATGGTAAGGTTTTCTTATTTGTTTCTCTTGTGATCTTGTCTTTTTGTTTTGTTCTGTTTTTTGT TTTTTTGCTATAAAAGCATAACTCCATCCATGTTATTGCAATCATTGTTTATCTGATTTTGGAAACAACTGAATCACTGA CTTTTTTTAACCTTTTTTCAATCATGGCACAGGGCAATGAGGTGTTACAATATGTTAGCTATAGTAGTATGTTTACCGTG TGTGTTACACAGAGAGAGTTTATATGTATGTGCATTGTGATCAAACCAGCAGGGCATGATCAATATGCTGATCTATGTAT GTGTATCATGATTATACGATGATCATGATCAATATAAAATCTGTATCTATGTATGTTCATTGTGATCAAACCAACAGGGC AAAATGAAAATCTGCAGAATTCACCTTATAGTTACTAGTTAGAACTATTATGAGAGGATATTAAAATTAATTCACTTAAG TGAAATTGAAAAACTACAAAACCTTTCTCTGTTAAACATGGTCCGCTTAATTATCAGTCTATCCTTCATTAACCAACTTT CTTACCCGGATTTCCATTAGTCTTGTTCTCATATGGAAAATCTATTGAATGCAATTCTACCCATTTTCTCTTAGCTGGAA CTGAGATCAATAAGAATATTGGATCAAACCATGCCTTTGTCGAAAATAAGTATTTAGTTTTTTTTAGATCTGAGTGTTTT TTTTATGGCATCTCTAATTATTAGGGTATCCTCCATTTAATAAAGTTTCTTACTAGGATTTCTACTGCATGTCCACTCAT CCATCTTAACATTAGCGCTGATTCCGGACATTCAGTACTATAAAGCATCATTGGTTTTATGACATGGTGGTAAATTTTCC TTTGATCTTGAAAGGCACTTTTGATCGCAAATATGTCCAGAACATTTTCATTTCATTCACTAAGGTTGGATACTATGATT ACAGCTTTCCCTATCTCTCCATTTCTTTTATGATAGAATCTAGATATCTGCTAGCTATGCAGTGTATGGTTTTTGGTATA CTGTGATTTCTGATTCTGACATCAAAGCCAATGTTGAATTTGCATACCCGCACCCAAGGCATCTTGTTAAATTTGCATTC TATGTTCTCCAGTTTGTACTCACTTGTTTTTTATGTTATGTTTAGCTTTTCGATATTGTCTGCAAAAGTGTACTATGTGA AAATAGCCTTTCTCATGCTTATCTTTTACAGAATATTGATTTTCATGCACATAACTATCTGGTGCTTCACATTCTACTTT TATGATGTGATGCCTTCTATTTTTAAATTATACTGTGACGGAGTCTTCTGCATCCTTCTCTGTCAAATTCATTTGATCTT ATATCCTCCCTGGTTGATGGCAGAGTTTGAACGGAAGAGGTGAACCACTTGACATGGGAGGAGGAAATTCAGCAGCTGTT CCGTATTCCTTGGAGTCATATACACATCAAGACCCTTTAGATCCCCCTGAAAGATACCCGATTCCTGAAGCAGGACTGCA TGCTCTGGATGGCTCTGCAGCATTCTCTTCTAACCACCTACCCGTATCAGTTGAAGAGAAGAAAGAGCATCTCGTGGTTG CTCGAAACAGTCTTGAGTTGCTCTCTAGCATATTAAATTCTGAGGCAGAGCCAAAACCTTTGAAGGTAAATTTTTTCGAA TTTGAAGAAAGCAGCTTTACGCCTTTACCTTAATGAATTGGTGTTTTCTTTGCTACTTCATGATGTTTACCTGAACTCTT GAATAAGTTGCTTGCTTTTCAATGCTATTCTTATGCAGATAGGGTGTAGATAGAAAAACAAATTGCCCTCACCCTCCTTT TCCCCATGTTATCCAATTAGTAAATGTTAGAGAATTATTATATCACTATATCGATAAGAATTATATTTGCTGATAGAAAT TTCAATATTTGTGTTTGGTTGCAGGAAGATTTAGCTTTGAGCTTGTTGGATAAGTGCAAGCAATCACTCTCTGTCATCAA GGAGATTGTGGAAAGCACTACAAATGATGAAGTGACACTTTTTGAGGCTTTGTATCTTAATGATGAACTGCAACAGGTAG TTTCCAATTATGAGGAGTTGGAAGCTGCTCAAGGATCTGGGGCACAACAACCTCCAAATGCTGACCCTGCCAAGCATGAT GCGGAAGCTGTTCAAAACCCTAATGAGAGACCTGAAAGATTTGAAGGTGGTGAATCTGAAGCTCAGAATCCAAAGCTGCC ACTGAAGTCTGACACTCCTGAAGTCAATGCAACCGATGGGGATGGTCATGATGAAGCCAAAATAGTGGATAGCACAAAAG AGAAGAATGAAGAATCTAGCCTAAAGAGAAATACCGAATAAGGAAAGCACGGGTGGCATGTTTCTTCTAGCTAGCATTAT GTTTTGTCCTTGTCCATATCTTGTAATAACTAATGTAGTTCCTTCTGCGAGGGTGATTACATTCTCCGAATGTGTAGTTT GCAGGAGTTTTATCCTGAGGATTATGATATTCAATCCTTCTATGATTTCATGCTAGTTCCTTATGTTGTTAATGCGGTTC TTCCCTATACTTCCCTCATTTTGATCCACTTTGTTAGTTAAGTTACAAGTAAAGAGTATAGTTAGTACATGCGTATGGAG AGACAACGATCATGTATGCAAACATGGGTAGTGATTTTAGGAGAACGATTCTTCTT
CDS sequence (LotjaGi1g1v0708900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGCTGAACCTAGCTCAACTCGGCGAGAGGTTGAAGACGGGTGGGGCCCAGATGGGTCGGATCGTGTCCGGCAA GGTGAAGGATCTCCTCGCCGCGCCGACGCCGGAATCCAAGATGGTCGACGAAGCCACGCTGGAGACGCTGGAGGAGCCGA ATTGGGGCATGAATCTGAGGATATGCGGGATGATCAACAGCGACGAGTTCAACGGTTCGGAGGTGGTGAAGGCAATCAAG AGGAAGATCAATCACAAGAGCCCTGTTGTTCAGAGACTCAGTCTTGATTTGCTGGAAACGTGTGCTATGAACTGTGAGAA GGTGTTCTCTGAAGTGGCTTCTGAGAAGCTTCTTGAGGACATGGTTCGGTTGATTGATAACGTGGAAGCGTATCATGAGA ATCGGAGAAGGGCTTTTCAGTTGGTTAAGGCTTGGGGTGAGTCTGAGGATCTTGCTTATCTTCCTGTGTTTCGTCAAACT TATATGAGTTTGAACGGAAGAGGTGAACCACTTGACATGGGAGGAGGAAATTCAGCAGCTGTTCCGTATTCCTTGGAGTC ATATACACATCAAGACCCTTTAGATCCCCCTGAAAGATACCCGATTCCTGAAGCAGGACTGCATGCTCTGGATGGCTCTG CAGCATTCTCTTCTAACCACCTACCCGTATCAGTTGAAGAGAAGAAAGAGCATCTCGTGGTTGCTCGAAACAGTCTTGAG TTGCTCTCTAGCATATTAAATTCTGAGGCAGAGCCAAAACCTTTGAAGGAAGATTTAGCTTTGAGCTTGTTGGATAAGTG CAAGCAATCACTCTCTGTCATCAAGGAGATTGTGGAAAGCACTACAAATGATGAAGTGACACTTTTTGAGGCTTTGTATC TTAATGATGAACTGCAACAGGTAGTTTCCAATTATGAGGAGTTGGAAGCTGCTCAAGGATCTGGGGCACAACAACCTCCA AATGCTGACCCTGCCAAGCATGATGCGGAAGCTGTTCAAAACCCTAATGAGAGACCTGAAAGATTTGAAGGTGGTGAATC TGAAGCTCAGAATCCAAAGCTGCCACTGAAGTCTGACACTCCTGAAGTCAATGCAACCGATGGGGATGGTCATGATGAAG CCAAAATAGTGGATAGCACAAAAGAGAAGAATGAAGAATCTAGCCTAAAGAGAAATACCGAATAA
Protein sequence (LotjaGi1g1v0708900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKLNLAQLGERLKTGGAQMGRIVSGKVKDLLAAPTPESKMVDEATLETLEEPNWGMNLRICGMINSDEFNGSEVVKAIK RKINHKSPVVQRLSLDLLETCAMNCEKVFSEVASEKLLEDMVRLIDNVEAYHENRRRAFQLVKAWGESEDLAYLPVFRQT YMSLNGRGEPLDMGGGNSAAVPYSLESYTHQDPLDPPERYPIPEAGLHALDGSAAFSSNHLPVSVEEKKEHLVVARNSLE LLSSILNSEAEPKPLKEDLALSLLDKCKQSLSVIKEIVESTTNDEVTLFEALYLNDELQQVVSNYEELEAAQGSGAQQPP NADPAKHDAEAVQNPNERPERFEGGESEAQNPKLPLKSDTPEVNATDGDGHDEAKIVDSTKEKNEESSLKRNTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 388 | 388 | 2.9E-178 | – | |
| PANTHER | 1 | 388 | 388 | 2.9E-178 | – | |
| Gene3D | 33 | 173 | 141 | 7.1E-32 | ||
| SUPERFAMILY | 35 | 168 | 134 | 2.18E-29 | ||
| SMART | 38 | 168 | 131 | 8.5E-20 | ||
| Pfam | 39 | 146 | 108 | 3.7E-22 | ||
| CDD | 39 | 164 | 126 | 3.95074E-47 | – | |
| ProSiteProfiles | 45 | 172 | 128 | 29.32 | ||
| SUPERFAMILY | 193 | 309 | 117 | 2.28E-18 | – | |
| Gene3D | 222 | 318 | 97 | 1.0E-7 | ||
| ProSiteProfiles | 223 | 310 | 88 | 13.557 | ||
| Pfam | 236 | 309 | 74 | 3.8E-11 | ||
| MobiDBLite | 309 | 394 | 86 | - | – | |
| MobiDBLite | 330 | 347 | 18 | - | – | |
| MobiDBLite | 364 | 394 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
Expression pattern of LotjaGi1g1v0708900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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