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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002014
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.544s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0064519.1
n.a. PREDICTED: TOM1-like protein 2-like [Glycine max] gi|356509355|ref|XP_003523415.1| chr0 22299584 22304430 +
4 domain predictions
1 GO term
Lj0g3v0266459.1
n.a. PREDICTED: TOM1-like protein 2-like [Glycine max] gi|356509355|ref|XP_003523415.1| chr0 137992745 138000928 -
4 domain predictions
1 GO term
Lj0g3v0327759.1
n.a. PREDICTED: target of Myb protein 1-like [Glycine max] gi|356570650|ref|XP_003553498.1| chr0 171333229 171336419 +
3 domain predictions
1 GO term
Lj1g3v0130080.1
n.a. PREDICTED: TOM1-like protein 2-like [Cicer arietinum] gi|502159182|ref|XP_004511421.1| chr1 1661723 1664782 -
4 domain predictions
1 GO term
Lj1g3v0265400.1
n.a. PREDICTED: TOM1-like protein 2-like [Glycine max] gi|356509355|ref|XP_003523415.1| chr1 2899641 2908255 +
4 domain predictions
1 GO term
Lj1g3v1380930.1
n.a. PREDICTED: target of Myb protein 1-like [Cicer arietinum] gi|502137213|ref|XP_004503010.1| chr1 16703655 16715949 +
4 domain predictions
1 GO term
Lj1g3v2063200.1
n.a. PREDICTED: TOM1-like protein 1-like [Glycine max] gi|356507893|ref|XP_003522697.1| chr1 24284729 24291078 +
4 domain predictions
1 GO term
Lj1g3v2432900.1
n.a. PREDICTED: TOM1-like protein 2-like [Glycine max] gi|356530201|ref|XP_003533672.1| chr1 28464421 28469476 +
3 domain predictions
1 GO term
Lj1g3v4483960.1
n.a. PREDICTED: target of Myb protein 1-like [Glycine max] gi|356570650|ref|XP_003553498.1| chr1 52722846 52726140 -
4 domain predictions
1 GO term
Lj1g3v4495350.1
n.a. PREDICTED: target of Myb protein 1-like [Glycine max] gi|356570650|ref|XP_003553498.1| chr1 52846220 52850839 +
4 domain predictions
1 GO term
Lj1g3v4538770.1
n.a. PREDICTED: target of Myb protein 1-like [Glycine max] gi|356570650|ref|XP_003553498.1| chr1 53527489 53527947 -
3 domain predictions
1 GO term
Lj3g3v2315220.1
n.a. PREDICTED: VHS domain-containing protein At3g16270-like [Glycine max] gi|356522998|ref|XP_003530129.1| chr3 28229694 28234425 +
3 domain predictions
1 GO term
Lj3g3v2737370.1
n.a. PREDICTED: target of Myb protein 1-like [Glycine max] gi|356570650|ref|XP_003553498.1| chr3 33735259 33737492 -
2 domain predictions
1 GO term
Lj3g3v3639590.1
n.a. PREDICTED: TOM1-like protein 2 [Vitis vinifera] gi|225461774|ref|XP_002285602.1| chr3 44170389 44173965 +
4 domain predictions
1 GO term
Lj4g3v2858430.1
n.a. PREDICTED: target of Myb protein 1-like [Glycine max] gi|356516423|ref|XP_003526894.1| chr4 38186775 38191827 +
4 domain predictions
1 GO term
LotjaGi1g1v0165000.1
n.a. TOM1-like protein 2; TAIR: AT1G21380.1 Target of Myb protein 1; Swiss-Prot: sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2; TrEMBL-Plants: tr|A0A0S3RDF2|A0A0S3RDF2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0165000 LjG1.1_chr1 31088439 31098167 -
4 domain predictions
1 GO term
LotjaGi1g1v0270600.1
n.a. TOM1-like protein 2; TAIR: AT1G21380.1 Target of Myb protein 1; Swiss-Prot: sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2; TrEMBL-Plants: tr|A0A0L9UFL9|A0A0L9UFL9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0270600 LjG1.1_chr1 66010226 66018938 -
4 domain predictions
1 GO term
LotjaGi1g1v0328000.1
n.a. ENTH/VHS/GAT family protein; TAIR: AT5G63640.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate; TrEMBL-Plants: tr|A0A0L9UDW3|A0A0L9UDW3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0328000 LjG1.1_chr1 78260720 78273205 +
4 domain predictions
1 GO term
LotjaGi1g1v0401200.1
n.a. TOM1-like protein 2; TAIR: AT4G32760.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2; TrEMBL-Plants: tr|A0A0B2PRM5|A0A0B2PRM5_GLYSO TOM1-like protein 2; Found in the gene: LotjaGi1g1v0401200 LjG1.1_chr1 88926102 88932667 +
4 domain predictions
1 GO term
LotjaGi1g1v0452100.1
n.a. TOM1-like protein 2; TAIR: AT2G38410.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2; TrEMBL-Plants: tr|G7KW31|G7KW31_MEDTR ENTH/VHS/GAT family protein; Found in the gene: LotjaGi1g1v0452100 LjG1.1_chr1 95172907 95181302 +
4 domain predictions
1 GO term
LotjaGi1g1v0701400_LC.1
n.a. TOM1-like protein 2; TAIR: AT1G06210.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|P0CR79|HSE1_CRYNB Class E vacuolar protein-sorting machinery protein HSE1; TrEMBL-Plants: tr|I1N9R3|I1N9R3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0701400_LC LjG1.1_chr1 126957992 126960257 +
3 domain predictions
1 GO term
LotjaGi1g1v0708900.1
n.a. TOM1-like protein 2; TAIR: AT1G06210.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q54GH3|TOM1_DICDI Target of Myb protein 1; TrEMBL-Plants: tr|I1N9R3|I1N9R3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0708900 LjG1.1_chr1 127710757 127714332 +
4 domain predictions
1 GO term
LotjaGi2g1v0450500.1
n.a. TOM1-like protein 2; TAIR: AT5G16880.1 Target of Myb protein 1; Swiss-Prot: sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2; TrEMBL-Plants: tr|A0A151SD01|A0A151SD01_CAJCA TOM1-like protein 2; Found in the gene: LotjaGi2g1v0450500 LjG1.1_chr2 94382532 94386661 -
4 domain predictions
1 GO term
LotjaGi3g1v0368300.1
n.a. VHS domain-containing protein; TAIR: AT3G16270.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9C5H4|Y3627_ARATH VHS domain-containing protein At3g16270; TrEMBL-Plants: tr|I1KGL0|I1KGL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0368300 LjG1.1_chr3 75466499 75471456 +
3 domain predictions
1 GO term
LotjaGi3g1v0542400.1
n.a. TOM1-like protein 2; TAIR: AT5G16880.1 Target of Myb protein 1; Swiss-Prot: sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2; TrEMBL-Plants: tr|A0A0L9TAI5|A0A0L9TAI5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0542400 LjG1.1_chr3 95882073 95886307 +
4 domain predictions
1 GO term
LotjaGi4g1v0415700.1
n.a. ENTH/VHS/GAT family protein; TAIR: AT5G63640.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate; TrEMBL-Plants: tr|A0A0L9UDW3|A0A0L9UDW3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0415700 LjG1.1_chr4 79127040 79133016 +
4 domain predictions
1 GO term
LotjaGi5g1v0270300.1
n.a. Protein MOR1; TAIR: AT2G35630.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q94FN2|MOR1_ARATH Protein MOR1; TrEMBL-Plants: tr|K7LKK4|K7LKK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0270300 LjG1.1_chr5 58336999 58359530 -
2 domain predictions
1 GO term
LotjaGi5g1v0270300.2
n.a. Protein MOR1; TAIR: AT2G35630.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q94FN2|MOR1_ARATH Protein MOR1; TrEMBL-Plants: tr|K7LKK4|K7LKK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0270300 LjG1.1_chr5 58339046 58359241 -
2 domain predictions
1 GO term
LotjaGi5g1v0270300.3
n.a. Protein MOR1; TAIR: AT2G35630.2 ARM repeat superfamily protein; Swiss-Prot: sp|Q94FN2|MOR1_ARATH Protein MOR1; TrEMBL-Plants: tr|A0A0R0I414|A0A0R0I414_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0270300 LjG1.1_chr5 58340141 58359241 -
2 domain predictions
1 GO term