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LotjaGi1g1v0710100.1

Overview

Field Value
Gene ID LotjaGi1g1v0710100
Transcript ID LotjaGi1g1v0710100.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|A0A140WWG1|A0A140WWG1_LOTCO AP2/ERF; Found in the gene: LotjaGi1g1v0710100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:127828110..127829383) extracted from Lotus japonicus Gifu genome v1.2.

ATTCAAATTAAACTTCCAAAGCAGAGTTCTAGAATCACAGAAAAAAGCAAATTAACATTTGGCTCACCCATAAAATCAAA AAAATTGTGAGCATTTTGAGATGGATTTTGATTCTCTTCTCTTCCAAAACCAAGATTTTCAATTCTTCCCTGAAAATCCT CAACTTTTCTCCTGGGAAGACAACAACAACAACAGCAACATTTTCTTCAATGATTTCACCACTCTTCTTCCCTTCAACAA TTTCAGTGAGAACTCACAATCACAATCACAATCACAAACCAAGGAAACATCATCATCCTCTGACTCAATCTCAAACTCAA ACTCTAACTCCAACTCTTCAGGATCTGTCTTTAGCTTTGAATCACAATCAGAAGTTTCCTCCCCCAGCAAAACTTGTGCT CCACCAGTGAGAGAAACTTATCAAGCATCATCATCACCTTCACCGCCGCCACCATCAGTTCCTAGTAAGAGGGTGTACAG AGGAGTGAGGACAAGGCCATGGGGGAAATTTGCAGCAGAGATTAGAGATTCAACAAGAAACGGTGTTCGAGTGTGGATTG GAACATTTGACACAGCTGAAGCAGCAGCTTTGGCTTATGACCAAGCAGCATTTTCAACAAGGGGTTCCCTTGCAGTGCTG AATTTCCCAGAGGAAGTTGTGAGAGAGTCAATGAAAGACATGGCTACTAAGCCTTGGGAAAAGGGAACTTCCCCTGTTTT GGCACTCAAGAGAAAGCATGCTATGAGAACAAAGAACAGTGTAAAGCCTTGTAAGAAGAAAATCAAAGGTGAGAAGGTAG AGATGATCAATGCTTGCCAAAATGTGCTGGTTTTGGAGGATTTGGGTGCTGATTATCTTGAGCAGCTTCTGAGCCTGACA TCGTAGCGTTTTTGTTCTGTTTTCTAGTTTTTTTTTTCTGGTTTTTTTGTAATTGTTCATCATCAAACTTGAAGGTTAGA ATTGATTCTTTCATGACTGGATCAAATGTACTATTCGGATATCCTCCTAGCTTGTTCATCATCTCCAGCCCTTAATGACT TTTTCCTCTATCTTGTTCTGAAAAGGAAAAGAAAATTGTATAAAAATGGCTTGAAGATAGTTTTTTTTTTCACCATTCAT GTAGTAGTATGTTGGTAAAGGGTTGTTTATCTTGGGTTTTTTACAGAGTAAATTAAGGAAAGTTATCTTATGGGTTGTTT ACCCATCGGATTATAACCTCATCTTACATTGTGCAATGAAATTATGTATAAAAATACAAATAAAAAATGTGTGG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0710100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATTTTGATTCTCTTCTCTTCCAAAACCAAGATTTTCAATTCTTCCCTGAAAATCCTCAACTTTTCTCCTGGGAAGA CAACAACAACAACAGCAACATTTTCTTCAATGATTTCACCACTCTTCTTCCCTTCAACAATTTCAGTGAGAACTCACAAT CACAATCACAATCACAAACCAAGGAAACATCATCATCCTCTGACTCAATCTCAAACTCAAACTCTAACTCCAACTCTTCA GGATCTGTCTTTAGCTTTGAATCACAATCAGAAGTTTCCTCCCCCAGCAAAACTTGTGCTCCACCAGTGAGAGAAACTTA TCAAGCATCATCATCACCTTCACCGCCGCCACCATCAGTTCCTAGTAAGAGGGTGTACAGAGGAGTGAGGACAAGGCCAT GGGGGAAATTTGCAGCAGAGATTAGAGATTCAACAAGAAACGGTGTTCGAGTGTGGATTGGAACATTTGACACAGCTGAA GCAGCAGCTTTGGCTTATGACCAAGCAGCATTTTCAACAAGGGGTTCCCTTGCAGTGCTGAATTTCCCAGAGGAAGTTGT GAGAGAGTCAATGAAAGACATGGCTACTAAGCCTTGGGAAAAGGGAACTTCCCCTGTTTTGGCACTCAAGAGAAAGCATG CTATGAGAACAAAGAACAGTGTAAAGCCTTGTAAGAAGAAAATCAAAGGTGAGAAGGTAGAGATGATCAATGCTTGCCAA AATGTGCTGGTTTTGGAGGATTTGGGTGCTGATTATCTTGAGCAGCTTCTGAGCCTGACATCGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0710100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDFDSLLFQNQDFQFFPENPQLFSWEDNNNNSNIFFNDFTTLLPFNNFSENSQSQSQSQTKETSSSSDSISNSNSNSNSS GSVFSFESQSEVSSPSKTCAPPVRETYQASSSPSPPPPSVPSKRVYRGVRTRPWGKFAAEIRDSTRNGVRVWIGTFDTAE AAALAYDQAAFSTRGSLAVLNFPEEVVRESMKDMATKPWEKGTSPVLALKRKHAMRTKNSVKPCKKKIKGEKVEMINACQ NVLVLEDLGADYLEQLLSLTS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190
2 261 260 2.2E-83 –
PANTHER
PTHR31190:SF193
2 261 260 2.2E-83 –
MobiDBLite
mobidb-lite
47 110 64 - –
MobiDBLite
mobidb-lite
47 127 81 - –
Gene3D
G3DSA:3.30.730.10
124 186 63 2.6E-28
IPR036955
SMART
SM00380
125 189 65 1.1E-33
IPR001471
ProSiteProfiles
PS51032
125 183 59 22.128
IPR001471
SUPERFAMILY
SSF54171
125 184 60 2.03E-21
IPR016177
Pfam
PF00847
125 175 51 1.1E-11
IPR001471
PRINTS
PR00367
126 137 12 6.5E-10
IPR001471
CDD
cd00018
126 184 59 1.44757E-18
IPR001471
PRINTS
PR00367
149 165 17 6.5E-10
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0710100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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