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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0710200 |
| Transcript ID | LotjaGi1g1v0710200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT3G23230.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LSX0|ERF96_ARATH Ethylene-responsive transcription factor ERF096; TrEMBL-Plants: tr|I3S7L2|I3S7L2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0710200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127854639..127855307) extracted from Lotus japonicus Gifu genome v1.2.
TTAATATTCTTGTACAAGTCTAATTACAAACACAATAATGGAAAAGGACTTCAGGGAAGGGGAGAAAAAGAAGCAAATTA AGTACAGAGGAGTAAGAAACCGGCCATGGGGGAAGTTCGCGGCAGAGATTCGAGACTCGAATAGGCACGGTGCTCGAGTG TGGCTTGGGACATTTAACACTGGAGAGGAGGCTGCAAGAGCTTATGATCGTGCAGCTTTTGCAATGAGAGGTACTTCGGC TGTTCTCAACTTTCCAAATGAGTACAACATGGCTAATTCTCCTAATCCTACCAAGTCCTGTTCATCATCATCTTCTTCAA TGATTGAAACAGAGCATGTTGGTAAACAAGTTTTCGAATTTGAGTGTTTGGATGACAAGTTGCTAGAGGAACTCCTCAAC TTTGATGACAATACATACCAACAGCAAAAAAATTCATAAGTAGGAATTGAACTGAGCCATTTCGTTACAGAATTGCGGAT TGATGCAGTCGCAATTGCACTCACTATGAAGACTTCAAACCTCTTTATATTGTGACAGCAATTGCGATTACGGACTGCAA TTTAGAAACTTGAGTAGGAATCACTTTCTCTTTTTCGCCCAAAACTATGTATGGTTAACTAGGAATGATATGTGACATGG TACATATTCAACTTTTTTATGTAGTGCAC
CDS sequence (LotjaGi1g1v0710200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGGACTTCAGGGAAGGGGAGAAAAAGAAGCAAATTAAGTACAGAGGAGTAAGAAACCGGCCATGGGGGAAGTT CGCGGCAGAGATTCGAGACTCGAATAGGCACGGTGCTCGAGTGTGGCTTGGGACATTTAACACTGGAGAGGAGGCTGCAA GAGCTTATGATCGTGCAGCTTTTGCAATGAGAGGTACTTCGGCTGTTCTCAACTTTCCAAATGAGTACAACATGGCTAAT TCTCCTAATCCTACCAAGTCCTGTTCATCATCATCTTCTTCAATGATTGAAACAGAGCATGTTGGTAAACAAGTTTTCGA ATTTGAGTGTTTGGATGACAAGTTGCTAGAGGAACTCCTCAACTTTGATGACAATACATACCAACAGCAAAAAAATTCAT AA
Protein sequence (LotjaGi1g1v0710200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKDFREGEKKKQIKYRGVRNRPWGKFAAEIRDSNRHGARVWLGTFNTGEEAARAYDRAAFAMRGTSAVLNFPNEYNMAN SPNPTKSCSSSSSSMIETEHVGKQVFEFECLDDKLLEELLNFDDNTYQQQKNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 124 | 117 | 5.2E-55 | – | |
| PANTHER | 8 | 124 | 117 | 5.2E-55 | – | |
| Gene3D | 14 | 75 | 62 | 6.7E-31 | ||
| SMART | 15 | 79 | 65 | 1.1E-35 | ||
| ProSiteProfiles | 15 | 73 | 59 | 23.354 | ||
| Pfam | 15 | 65 | 51 | 7.8E-15 | ||
| SUPERFAMILY | 15 | 74 | 60 | 9.81E-23 | ||
| CDD | 15 | 74 | 60 | 3.73156E-31 | ||
| PRINTS | 16 | 27 | 12 | 6.7E-11 | ||
| PRINTS | 39 | 55 | 17 | 6.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0710200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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