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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0712100 |
| Transcript ID | LotjaGi1g1v0712100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix (BHLH) family transcription factor; TAIR: AT4G16430.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O23487|BH003_ARATH Transcription factor bHLH3; TrEMBL-Plants: tr|A0A072UDK3|A0A072UDK3_MEDTR ABA-inducible bHLH-type transcription factor; Found in the gene: LotjaGi1g1v0712100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128010081..128012613) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAAAAAAGAAAATAAAAAATAAAAATTAAGTGGAGAAAAACAGAAAAAGAAAGAGTTATAGCAACAGTTTTGGTTTT TCAGATCTAGAGCTAGATTTAGCCAAAAAAAAATCAATATTCAATAGATCCTCTTGTGAATGTTAAGGTTTATCCAATCT CTGTAACTTCACTGATTGTTGAAGCTTCTCACTTGTTGCCGACACAGAGAGAAAAAGACAAAGAAAAACCTCAAATTTTC TGCTGTTCCAGGTAATTCCTTAACCTTGGTCTTCAGATTACCATGACCCAGAACTGTATTTTGTTGTTATTGTGTGTGAT TAGCTTGTATTCAACATAAAGTTAGGTTCTTTCTGATATTCATGAAGTATCTGACTATTTGGGTGTTTCCAAGTTTCTGC TTGTTAGCATGTTTCTGATTTTTTTAAGCTTTTTTTTTTGTTGATGAATAGTTAGCAGAAGTTGAGGTTCAAGTTGGGAT AAAGTTTTGAAATTTGAAGAGATTTATGTGATATTGATTGAGGGTAGGGTGCAGAAAGATGACAGCTGAGAGGTTTTGTG AGAATGAAGAAGATAAGGCTAAGTTGGAATCTGTGTTGGGTGCTGAAGCTGTTGCCTTCTTTAGTTCGGCGGTTTCCAAC GATGTTTTCGCGGATGTTATTGTTCCGCCGAGTCCTGATTTGGGTACCCACCAGCGGTTATGTCACCTTGTTGAGGTGTC CAAGTGGGACTATGCAATTTTGTGGCAGGTTGCTGGGTTGAAATCTGGTGGTTATGTCTTGAAATGGGGTGATGGGCATT GTCAGGATCCGAAAGTGGGGCAAAGGAGTGAGCAGCAGGAGGAGGAGAAGGATGGTGTCAAGAAGCAGGTGTTGCAGAAG GTTCATGCTTGTTGTGGTGGATCTGACTCGAAAGATGCCATTTTTACAAGGTTGGATAGGGTTTCAGATATGCATATGTT TTACTTGACCTCTGCGTATTACGTGTTTGGTTTTAATTCCCAGTGTGGTCCTGGCAGCTCTTTTAAGTGTAGTAAATCAA TTTGGGCTTCTGAAGCTGCTAGTTGTTTAAACCAATATGAGTCAAGATCATTTCTGGCGAAACTGGCTGGTTTTCAAACT GTTGTTTTTGTGCCTTTCAAGGGTGGGGTTGTTGAGCTTGGTTCGAAGGAAATGATGCCGGAAGAACAGGGTGTTTTGGA TATGGTCAGGGCAACATTTGGGGAATCTAGTTCTGCACAGGGAAAGGTGTTACCGAAGATTTTCGGGCATGAGTTAAGCC TTGGAGATACAAAATCTCAGTCCATAACTATTAGTTTCTCTCCTAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCG TATGAAGTTCAAGCGCTGGGGGTAAACCATGCTTATGGGAATTCGTCCAATGGGTGCATAGGAGACGGTGAGGCGAAAAT GTTCCCTCAGTTAAATCAAATGATTCCTGGGAATTTTAATCCTCAAGCTAGGGTTTCTAGTTTAGATTTGGGTAATGAAG ACGCGTCCTCACCTCATCTTGATGACCGGAAGCCCAGAAAAAGAGGGAGAAAGCCTGCCAATGGGAGAGAGGAACCACTG AATCATGTTGAAGCCGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCCAACAT ATCTAAAATGGACAAGGCGTCTCTGCTTGGCGATGCTATTACACATATCACCGATCTCCAGAAGAAGATCAAGCTTTTGG AAACTGAAAAGGACATGACTGGCAAGAAGGACCAGCAGTTGCCACTTCCGGATATTGATTTTCAGTCTAGACAGGATGAT GCAGTTGTGAGAGTGAGCTGCCCCTTAGATACTCACCCCGTTTCTGGAATTGTTAAAATGTTCAGAGAGCATCAAATTGT AGCTCAAGATTCCAGCGTTTCAACTGCGCAGGATAAGGTAATTCATACATTCTCCATACGAACTCAAGGTGGGGAGGCTG CTGCTGTGCAATTGAAAGAAAAGCTTGAAGCATCTCTCTCCAAAAATTGATTTGAAATTGTAGATGTAGTGCATATCAAT GCAAACTATGAGAAAAAACATGTATGAATGTAATGCTAGCAGACATGACTTGAGAGTGTTTCTAGGCTACTTTTGTAATA AGATATGGAGCTAGGAATCCCTATGTACGTGACAAAATTAGTAATGTTGTAGACTTGAATTATGTAATGCATGAGCTGTG AATGTAATATACTCTTCAAGCTTAAGTGAATAGGAACTGCTATATCATTGGAGAAGCTAAGAATTTTTTATACCATTGCT AGTATACATCAGAGCGTGTATATAACTTTCAGTGCAGAGATTTGCATGCTTATTACAGTTCATGTTTTATGATCAAGATT TCATTTGAAGACATTCATGGTCACTGTTAGGTACCCCCTCTGGATATTCATCTGTATTCACCCCCACAACAACCTACATA CATCCCATTATTTTACCATATAATCCTTATTAACATACTAATATGAGTTGCTG
CDS sequence (LotjaGi1g1v0712100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGCTGAGAGGTTTTGTGAGAATGAAGAAGATAAGGCTAAGTTGGAATCTGTGTTGGGTGCTGAAGCTGTTGCCTT CTTTAGTTCGGCGGTTTCCAACGATGTTTTCGCGGATGTTATTGTTCCGCCGAGTCCTGATTTGGGTACCCACCAGCGGT TATGTCACCTTGTTGAGGTGTCCAAGTGGGACTATGCAATTTTGTGGCAGGTTGCTGGGTTGAAATCTGGTGGTTATGTC TTGAAATGGGGTGATGGGCATTGTCAGGATCCGAAAGTGGGGCAAAGGAGTGAGCAGCAGGAGGAGGAGAAGGATGGTGT CAAGAAGCAGGTGTTGCAGAAGGTTCATGCTTGTTGTGGTGGATCTGACTCGAAAGATGCCATTTTTACAAGGTTGGATA GGGTTTCAGATATGCATATGTTTTACTTGACCTCTGCGTATTACGTGTTTGGTTTTAATTCCCAGTGTGGTCCTGGCAGC TCTTTTAAGTGTAGTAAATCAATTTGGGCTTCTGAAGCTGCTAGTTGTTTAAACCAATATGAGTCAAGATCATTTCTGGC GAAACTGGCTGGTTTTCAAACTGTTGTTTTTGTGCCTTTCAAGGGTGGGGTTGTTGAGCTTGGTTCGAAGGAAATGATGC CGGAAGAACAGGGTGTTTTGGATATGGTCAGGGCAACATTTGGGGAATCTAGTTCTGCACAGGGAAAGGTGTTACCGAAG ATTTTCGGGCATGAGTTAAGCCTTGGAGATACAAAATCTCAGTCCATAACTATTAGTTTCTCTCCTAAGGTGGAAGATGA TTCTGGTTTCACTTCTGACTCGTATGAAGTTCAAGCGCTGGGGGTAAACCATGCTTATGGGAATTCGTCCAATGGGTGCA TAGGAGACGGTGAGGCGAAAATGTTCCCTCAGTTAAATCAAATGATTCCTGGGAATTTTAATCCTCAAGCTAGGGTTTCT AGTTTAGATTTGGGTAATGAAGACGCGTCCTCACCTCATCTTGATGACCGGAAGCCCAGAAAAAGAGGGAGAAAGCCTGC CAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCCGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTTTATGCCT TAAGAGCTGTTGTTCCCAACATATCTAAAATGGACAAGGCGTCTCTGCTTGGCGATGCTATTACACATATCACCGATCTC CAGAAGAAGATCAAGCTTTTGGAAACTGAAAAGGACATGACTGGCAAGAAGGACCAGCAGTTGCCACTTCCGGATATTGA TTTTCAGTCTAGACAGGATGATGCAGTTGTGAGAGTGAGCTGCCCCTTAGATACTCACCCCGTTTCTGGAATTGTTAAAA TGTTCAGAGAGCATCAAATTGTAGCTCAAGATTCCAGCGTTTCAACTGCGCAGGATAAGGTAATTCATACATTCTCCATA CGAACTCAAGGTGGGGAGGCTGCTGCTGTGCAATTGAAAGAAAAGCTTGAAGCATCTCTCTCCAAAAATTGA
Protein sequence (LotjaGi1g1v0712100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTAERFCENEEDKAKLESVLGAEAVAFFSSAVSNDVFADVIVPPSPDLGTHQRLCHLVEVSKWDYAILWQVAGLKSGGYV LKWGDGHCQDPKVGQRSEQQEEEKDGVKKQVLQKVHACCGGSDSKDAIFTRLDRVSDMHMFYLTSAYYVFGFNSQCGPGS SFKCSKSIWASEAASCLNQYESRSFLAKLAGFQTVVFVPFKGGVVELGSKEMMPEEQGVLDMVRATFGESSSAQGKVLPK IFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGVNHAYGNSSNGCIGDGEAKMFPQLNQMIPGNFNPQARVS SLDLGNEDASSPHLDDRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDL QKKIKLLETEKDMTGKKDQQLPLPDIDFQSRQDDAVVRVSCPLDTHPVSGIVKMFREHQIVAQDSSVSTAQDKVIHTFSI RTQGGEAAAVQLKEKLEASLSKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 502 | 499 | 5.9E-240 | – | |
| PANTHER | 4 | 502 | 499 | 5.9E-240 | – | |
| Pfam | 51 | 227 | 177 | 2.0E-41 | ||
| MobiDBLite | 312 | 362 | 51 | - | – | |
| MobiDBLite | 312 | 327 | 16 | - | – | |
| MobiDBLite | 329 | 362 | 34 | - | – | |
| Gene3D | 350 | 424 | 75 | 3.0E-15 | ||
| ProSiteProfiles | 351 | 400 | 50 | 16.456 | ||
| CDD | 354 | 405 | 52 | 7.39873E-15 | ||
| SUPERFAMILY | 354 | 421 | 68 | 7.46E-18 | ||
| Pfam | 355 | 401 | 47 | 5.4E-10 | ||
| SMART | 357 | 406 | 50 | 1.2E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0712100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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