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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0712900 |
| Transcript ID | LotjaGi1g1v0712900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT2G30590.1 WRKY DNA-binding protein 21; Swiss-Prot: sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21; TrEMBL-Plants: tr|A0A0R0KWS7|A0A0R0KWS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0712900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128077503..128080365) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTCCACTTTTGCTCCTCTCTTTACTCCTCAGTTTCATATTTTACTTTTTTCTCTCCAGAACTAGAAATATAATAATA TTTAATAGTAATATTCTTCATGACTGAAACTTCTGTATCCTTGTTGTTGTGTGAATTGTCAAGCTAAGCTACTGCTTAGT TCTTCTCTTTCACACCTTTCAATCTCAAAACCCTGGTGGAAGGAAGAAGAATCTAGGGTTTGACACCACCATCTCCATCA AAGGTTCGTGCTTTGTTACTTTTTACTGCCATTTTTGCTTTTCACTGGAAATTTTGGTGTCATTTTGAAATCTCTGCTTG CTCTTTTTCATCTACATTGCCAGGTACAAGTAGACCCATACCAGTTAATTCTAATTCTGGGTTTTCCTTGTTTTCAAATT TTACCCCTTTATTGAACTTAAATTTTGAAGCTTGAATTAGAAATCATGTGTTCTTTGTTCTCTCTGTGGTGAAAAAATGA ATTTTTATGTTTATCTATAAAATGGGGGTGAATGTCAGAATGTGCTATGCATTTTTTTGATGAATGGGAGTTTTTTTAGT ATTCTGGTGTTCTTCTTGGCTTAGGTTTGTTTCCCATTGTTGGTTTGGGAATTAGTTTCTCTCTTTTGTTGTTTTTGTAG ATAGGTAGAGGCTGAGATGGAGGAGGTTGAAGAAGCTAACAGGGCAGCTGTTGAGAGCTGTCATAGAGTCATAAGTATGT TGTCTCAGCCTCAGGATCAAGTTGAGTATAAGAATTTAATGGTGGAGACTGGAGAAGCTGTGAAGAAGTTCAAGAGAGTT GTTTCCCTTCTCAGTAATGGTGGTGTGGGTCATGCAAGAGTCAGGAAGTTGAAGAAACTTCCAATCCCTTTTTCTCAAAG CATCCTTAAGGACAACCCAAATTGCAAAACCAATCACAACCAGTCAAAAACTTTTGAGTTTCCTCAAATTGGTTTTCCTG ACAATTCAGTTCAGGAATTGGGTTCAAGCGTTAGAAGTTCAATCTGTCTGGGAAATGGTAATCCGTCTTTGGAATTGAGC TCGAACGGGAAAAATCCTCTTGTCATTGCCCAACAACCCTTATCAACTCACTACAACATCCTTCAGCAGCAGCAGCAGTT GCAAAGGTTGTCATGGCAGCAGCTACAAATGAAACAGCAAGCGGAAATGATGTTCCGGAGAAAGAATGGTGTTATAAATC TGAATTTCGATAACTCTAGCTGCACACCGTCAATGTCATGTACCAGGTCTTTTGTTTCTTCCTTGAGCATAGATGGAAGC TTGGCTAACATGGATGGAAGTGCCTTCCAATTAGCAGGAGCTGCACACCCTTCTGATCAGAATTCAGAACAGCACAAGAG AAAATGTTCTGCCGGAGGTGATGAGGGTAGCACAAAATGTGGGAGCAGTGCTAAATGCCATTGTTCAAAGAAGAGGTTAG ATTCACTTCCTCATCGAATTCGAATTCAACTTTTTTATATGTTATAGTATTACAGTCACATACATTAATCATTGCTGTCT GTTGTGTGAAGATTTAATATTCATTCTGATATGTCATGATTGTTACATGCATCCTCCCCAGGAAGCATAGAGTGAAAAGA TCAATTAAGGTGCCTGCTGTCAGCAACAGAATTGCAGATATCCCTCCCGATGATTATTCATGGAGGAAGTATGGACAGAA GCCAATCAAGGGTTCACCTCACCCTAGGTATGTTCGAGCTCTCTTTCTGAATTATTTAAATGGCACCTAAGCATAACTCT GCTGTAATGATTGATAAAGTGTCTAAGCTCTCTGGTTAATATTGTTTACTATGCAGTTTGGTTTGCATTGATAATTTTAA GCTTTTCTTTCGAGCCTTAAAAGTACAAATGTTGTTATCAACCCTTAATTTTTTTCGTGTGTATAAGTTAGTGGCAGTGG TTGTGCTTCGGTTTGGGTTGCTAATTATATCTCTGCGTCGTACTTAGCTCCTTGGAGGTATTAAGGTAGATCAGGATATT GCAGACTTGTGTGATTGAAATAGTCCTAGATTGTTCACTAGTCTCTCTTCATATTTTAGAACAAATATTGTAACCACAGT TCAATGTGGTAGGATTTTGTAGGTTAATCACAAGAATTTTTGTCATGGCTATTCTGTTTCTGATGCAAACATGAATGAGA AATCAATATCTGGTATTTTGGAAGTGTCAACATATAAGACCTTTATCCCCTTCAACTAAAAGACACAATCAAAATGTCTC TATTTCTCAATGTGTCTTCATCTAAGATTTCCTATTTGATGTGCAACATGTTTACTTAACCTTTGAGTGTGGACTGTTAG TTTTGTTTCTGAGGAAATTGACTCTGATTTTTCTTTTTTCAGGGGATACTACAAATGCAGCAGCGTGAGAGGCTGCCCTG CAAGGAAGCATGTTGAGAGGTGCTTGGATGAGCCTTCCATGCTAATTGTTACCTATGAAGGAGACCACAACCACCCCAAG TTACCATCACAATGTGCAAATGCTGCAGAGCTTAACCAAGATCAAGCTCCATCATTTAATTTGTCAAAACCTCTTGAGCC TTGAGATGATGTTGTACAGATTTAAGTTGTGCAGGCTGGGATTTTGCTAGCACAGTTTTCAGCTTTTGGTTAGTTTGTTA GTGAGTTAAGTTAAAAGCTCAGATGAGGTTCGGTGATAGAATGCAGTGAACTATATAGTCTGCAAAATTGTTAAGTTTCG ATTCTATGAACTATTTTCTTTTTCTTAAGCATATGTTATAAACAATTGACAGAAAAAATGTTATAACCATTTCAAAGATT TTTAAGGGCCAGCTCGAGTTGGTTGCAAGTTTTCACTTTTTGGTTTTCAAATTTGTGTTGGGC
CDS sequence (LotjaGi1g1v0712900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGTTGAAGAAGCTAACAGGGCAGCTGTTGAGAGCTGTCATAGAGTCATAAGTATGTTGTCTCAGCCTCAGGA TCAAGTTGAGTATAAGAATTTAATGGTGGAGACTGGAGAAGCTGTGAAGAAGTTCAAGAGAGTTGTTTCCCTTCTCAGTA ATGGTGGTGTGGGTCATGCAAGAGTCAGGAAGTTGAAGAAACTTCCAATCCCTTTTTCTCAAAGCATCCTTAAGGACAAC CCAAATTGCAAAACCAATCACAACCAGTCAAAAACTTTTGAGTTTCCTCAAATTGGTTTTCCTGACAATTCAGTTCAGGA ATTGGGTTCAAGCGTTAGAAGTTCAATCTGTCTGGGAAATGGTAATCCGTCTTTGGAATTGAGCTCGAACGGGAAAAATC CTCTTGTCATTGCCCAACAACCCTTATCAACTCACTACAACATCCTTCAGCAGCAGCAGCAGTTGCAAAGGTTGTCATGG CAGCAGCTACAAATGAAACAGCAAGCGGAAATGATGTTCCGGAGAAAGAATGGTGTTATAAATCTGAATTTCGATAACTC TAGCTGCACACCGTCAATGTCATGTACCAGGTCTTTTGTTTCTTCCTTGAGCATAGATGGAAGCTTGGCTAACATGGATG GAAGTGCCTTCCAATTAGCAGGAGCTGCACACCCTTCTGATCAGAATTCAGAACAGCACAAGAGAAAATGTTCTGCCGGA GGTGATGAGGGTAGCACAAAATGTGGGAGCAGTGCTAAATGCCATTGTTCAAAGAAGAGGAAGCATAGAGTGAAAAGATC AATTAAGGTGCCTGCTGTCAGCAACAGAATTGCAGATATCCCTCCCGATGATTATTCATGGAGGAAGTATGGACAGAAGC CAATCAAGGGTTCACCTCACCCTAGGGGATACTACAAATGCAGCAGCGTGAGAGGCTGCCCTGCAAGGAAGCATGTTGAG AGGTGCTTGGATGAGCCTTCCATGCTAATTGTTACCTATGAAGGAGACCACAACCACCCCAAGTTACCATCACAATGTGC AAATGCTGCAGAGCTTAACCAAGATCAAGCTCCATCATTTAATTTGTCAAAACCTCTTGAGCCTTGA
Protein sequence (LotjaGi1g1v0712900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEVEEANRAAVESCHRVISMLSQPQDQVEYKNLMVETGEAVKKFKRVVSLLSNGGVGHARVRKLKKLPIPFSQSILKDN PNCKTNHNQSKTFEFPQIGFPDNSVQELGSSVRSSICLGNGNPSLELSSNGKNPLVIAQQPLSTHYNILQQQQQLQRLSW QQLQMKQQAEMMFRRKNGVINLNFDNSSCTPSMSCTRSFVSSLSIDGSLANMDGSAFQLAGAAHPSDQNSEQHKRKCSAG GDEGSTKCGSSAKCHCSKKRKHRVKRSIKVPAVSNRIADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVE RCLDEPSMLIVTYEGDHNHPKLPSQCANAAELNQDQAPSFNLSKPLEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 346 | 346 | 6.1E-138 | – | |
| PANTHER | 1 | 346 | 346 | 6.1E-138 | – | |
| MobiDBLite | 221 | 251 | 31 | - | – | |
| Pfam | 234 | 279 | 46 | 2.3E-16 | ||
| Gene3D | 265 | 343 | 79 | 7.6E-30 | ||
| ProSiteProfiles | 276 | 342 | 67 | 29.746 | ||
| SUPERFAMILY | 279 | 341 | 63 | 6.02E-27 | ||
| SMART | 281 | 341 | 61 | 1.9E-37 | ||
| Pfam | 283 | 340 | 58 | 3.7E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0712900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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