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LotjaGi1g1v0714000.1

Overview

Field Value
Gene ID LotjaGi1g1v0714000
Transcript ID LotjaGi1g1v0714000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Basic helix-loop-helix transcription factor; TAIR: AT4G02590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O22768|UNE12_ARATH Transcription factor UNE12; TrEMBL-Plants: tr|C0JP11|C0JP11_LOTJA Putative basic helix-loop-helix protein BHLH3; Found in the gene: LotjaGi1g1v0714000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:128222582..128227953) extracted from Lotus japonicus Gifu genome v1.2.

TTACCAAAGATAGATACCCTTCTAGGAAAAGAGGATGTCTTTTTAAGCAGAACAAAGCCAACTCCATTTTGCTCTTCCAA GTAGGAAACTGAGTCACTACTGAGTAGAAAAAAAGCAGACTGAACAACAACAAAGCTTCATGTAGATTCCACTTCCGCGT CGCCAACTCGTTTTCCCCCAACTCACCCGAGTCCACTCTCATGGCCAACAACCCTTCGGACGCTCCCGCCGCCGACGACT TCCTCGAGCAAATCCTCGGCCTCCCGCCCTTCGGCTCCGGCGACTCTGGCTTAGTCGGACCCGACATCGGACTTGCCGGT ACGGCTCCGATGATGCTTCAGCTCAACTCCGCCGATCATGGCAACCATCATCACCTCGCCGCCGGTGGTCCCTTTCATGC ACCTGTGTACCAGTTAGGGTTGAGCTTGGACCAAGGGAAAGTAGTAGGAGGAGGAGGGTTCTTGAAGCCCGAGGACGCTT CTGGTAGTGGAAAGCGTTTCCGTGACGACGTCGTTGATGGTAGACCTAAGAATGTAAGACCGCGTCTTTTTCGATTCTCT TTGTTTCATCACAAAATTGTCTGAAATGCTTTCACAACTGAAAAAGAAGAACCCTCTGTGTGTTGATATAGTCTTTGTTT GGATTGAAACTGAGCTTGGTGCTTCAATTGTTTCAGTTTAATATGTATGTTTATTTTTAGTAAGAGCTAGATTAATACTA TTCAGTTAGTTTTGATGCAGAAGCATAATTTTAAATGTTGATTTTAGTATGTATATGTAATATGTAATATCAACTTTGAT TTTTTCACCCCATCAATATCGAGATTCCGTACGGTTTTCTTGGATGTGAGGATTCACTTTAGAGCATTGATAGAGTGGTA GAGAAGGGAAGGAGGGAATAGAATGTTTGGAAACCTGTAAGAAGTAGAGTTTTATGCTGTGTGCTGTGTTCATTCTTGTA TGGTAAACAATAACTCAATACAATAAAGTTTGGTGGTAAACAAATGTAATGACTTGGAGGGTATCTGATCTTTGACATGG AATTACAAGCAAATGAAGCTGGGAAGGGATGTATTATTGTAGAGGGAAAAAAAGGGAGTTATATTGGCCAAGGTTTTTTC CATTGTCACTCGTTTGTGGGACTTTAGCACCACTGGTGCTTTCTATTTATATATATAAATTTGGCATTCCAAAAAAAAAA TCCTAATCTAATTATTATAGGATGATCATTGTGATTATTGATTTTCTTCTTAGCCAGATTCAAATTACGACCATTACATA GCTGTATAAAGCACACAAAATATTTTAAAATTTTATGAGTTTATGTATGGAAATAGTACCTAGTAAGCAGACGAATGATA ATCTGTTTGCGAATAGGAAATGAGTTCCTTCAATGTTCGTATTGACAACTTTGTTAGGTGTATGCTTGTCGATGCCAGCC AACTTGTGATAGACATCAACTACAGGTCTCACTGAAGCTTTGTATTTGGAGTCGGTGAATGGGCTATCATTTAGAGCTTA GGAGTTGACTTGGAATACATCTATTGGAAAGTAGAAACTGACATAAGGAAGATGAATAGAAATTGAAGATTAATGAATTA TGCACGAGGATTAAATCTAGACTGAGAATGATTGTGGGTCAACCTTAAGTGATATAAATTCAATCCTGTTGCAAAGTGTT AACTTAACATGGATTGGCTTGAACATTTCCGGATTATGATTAAGTTAGGTCGTTTATGATTGAGTTTTTTTTGTTGCTTT TCTGGGATCTTTGGACCTTTAATGTCAAATATATACTCTGAGCATCCTTGAATAAATGATCTCTTGTTGTGGAGAGTTTT TTTTTTCTTCCTTTTCCTCTTTATTGTTCTCACTAGTTTTTTCTGAGAGGGTAAAGGGGGAGTTGATCAAGTATAAATTT TTCTCCTATTGATGATCTATAACCTTATTGCAGGTTTATCATGGGCAGCCCATGTCTACTACGATGCCTGCTGCTCCCCA TCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGGTGAGCT TCAGGATATTTGCATGAATACAGACTGTTTGCTGGTTATGAATTTATGATGTTCAACATTTATTTTGTGGGTTAACTTCA TAGCTCATTTTCTTCTTTGATTACAGTTGCGCAGAGAAAGAATAGCAGAAAGAATTAGGGCATTGCAAGAGCTGGTTCCA AGTGTCAACAAGGTATGTGATTTCTCTTGAATATCATTTTGATTTTATTACAAAATGTGATTTTGCATTTGTCTTTGGCA AGAGTGAATTTGTCTTTGGTAAAGTAAGGCATCTATGTTATGTATAGCTTGAAATGTTAAAATGATAGAGTATGGAGTTG ACATATACAGATGCATACATTATAATTCTCTCCACTTTTTAGTTCGCTGATTTGATAATGACACATAGTTTGTTGCCTAT TTTGTGTGGGTAGATTCATATTTTCTGAACAAAAATGATATTACTCATCAATTATTCCAAAAAAACGAAATTGTGATTTT TTTTAGGTGTGTATTTTCTGTCTTTGTAGACATTGTTCGTTGCATAATTGTTTAGCATCACATCACCATCTCCACTGCCG TTCTTGAAAAGAATTGTGGATGGAGTTTGTTCACATCACATATATGTAAAATCTACTGATCCATTTTTTATGCATTGTAC TGTGGTGTAATTAGACATGGAAGTCTTGCTTCTCATAAATGGATAAAAAAGTTGAATAGCATCTGCATATATTCTAATTT GGTTTGTATCAAATTTTGGAGTGCTTGATTATGAGATAAATCTACTTGACTTTAAGGGGTGATAGTTTTTGTATTATGTT GAATAGCAGCTGCATGACTGCTGTGTTTGTAAAGAAGATAATATGCTGAATCATTCCATTCTTTCTAATATTATGTTGCA TTTGTACTCTGTTCAGACTGATAGAGCCGCCATGTTAGATGAAATAGTGGATTATGTGAAGTTCTTAAGGCTTCAAGTGA AGGTAACATGCTACTCTGCTCTTTATGGATCCTGTGTTTAATTCAGGTCAAAATTTGTTATTAATGACAGTTTATAATGC CCTTTCTCCGGATTACTGGTTTTTCTTGTTAAATCCGTTAACCTATTATTTTTTGTGCCCCCACATCACTGAGGTGTATT AGTTAGGATTCAACTCATTGTCGTGAACCCCGCTAAAGGGTGGTTTCCACTTGGACGAGAACCCATTGGCCAATGAATAT TATCCCTCAAGCCTGGGGAATATCTAAATACAATCAAATAATGATAGCATTCTCAGGTTGCTTAATGCACCGTAGTTACT TCTAACTATCCAATCATTTGTAAGGGTCTTCTGTTGGAATAGATATTTCTGTTTGATCCATGATTTAAATATGAAGGAAA AAGGCTCCTTTCTCAATCCAAAATTGAATTTTATGCAGTGTGAAATTAAGAGTTCAAACGACTTCCAATGACTGTCAATT GATCTGCCTTTCAGGTTTTGAGCATGAGTAGATTGGGCGGAGCAGGTGCAGTGGCACCACTGGTAACTGATATCCCATTA TCGTCAGTGGAGGTAATTATTTGAGGAACAAGTATCTACAAAAAATAAATATGCGTTTAATATCTTTAAGCAATCTAAAC ATTTTCTGGTGAATGGTGATAATCAGGAAGAAGGCGGTGAAGGTGCGAGAAACCGACCAGCTTGGGACAAGTGGTCAAAT GATGGTACAGAAAAACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAATTTCTTCAATCAAAGGCACT CTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAACCACCGGATAGCTCTAGTATGGTCAAGCCGGAAA CTAATCCTCCTTCATAAATCTTAGGCACACATGTTGCACAATCTATTGGTCCCAGAAAGGGTTCACCTAATACTACTGGG ACCTAGGAGCTATTTGTCTGTTCCAAACCCCATTAATTAAGTCATTGGCAAGCATCAAGTTGCAATCAAAGTCAGATGCC ATAATTATTTCTTTTTTGCCTTTCTTTCAGCTTTTGTCCATACAGGGTTCAATGTCAATGCCTTAGAAAATACAAGCAGA CCCCTTTGTTGTCTTGCCAAGTATCAAGTAAAGAGGAAGAAATTGTCAAAAGTTCACTTGATGCACTGTTCTCTTTTGTG TTAATGGGTGGGAGGTAGTGGAATGTGATCAATGCGCTTTGACAGTGGGGCTTAGTTTTTTTTGTAGTGGGCTGTGGGAC CTTCTAAAGGGTTAGAGTGGTGTGTATATTTTTAATAGTGATGTAGCACTAGAGGATTTGAATTTTAGAGGTGAAATGGA TAATAGTTGCTTTATTGCCAAGTCTAGCAGAAAATAATGATGCATTTTGTGTGTTATTCAAAAAGTAATTAGACGACTTT TCCATTCTCCTTAGTCATTATTGGATTTTGATTCATTAGATAGAGATGTGAAATATTGGTGTAGCCGTGTAGGTGCACAA AACACAGTCCTCATCAATCAGTTAGTTATAATCTTATTCACACATGTATTCTGACTTATTTTCTTTCCCACTTTCTTGTC CGACATTTTTTTATTACTTCATTCAACATATCTCTTCTATTCTTATCTCGTTTTAAAGGTGGGTGTGGAATGAATGTGTA TAAATTTTACTCCTCCTTAGTCCTGTTGGCCCAAGAAAGAAAAACGCATTCAGCCTAAAACTCTCGAGGAAGTCGAATTC TGACTAAAGAAAGGAAGAGGAAGTTGCACCAAGTTAATGGGGCGGCAAAACTCGACAACAACAATTACTGCTAAACACAG GCACATGTAACACGTGCCACATTGACCAAGTCAAATTCCCCCCACGATGGTCGAAAACATGGCCAGGAAACGGTTGGAGC AGTTGAAGCACACGATCTCCACCACCATGCGCAGAACTTCCGGAGCAAGCATCAGATCGTGGGAGAAACCAGACCCACTA ACCTATCCACTGAGAAAAAAAAAAAAAACCGTCAAGGACACGCAGAGCACGAAACTCTATAAATAGGAGAATCCAATTCA GAAAGAATCCAATTCAGAAAGGGGGTTGGCAACTGAAAGTCTGAAAAATTCACCAGAAAGCTCTGATGTCCGCATCAATG AGACTCAAGGAGCAAAACGTGATGATGAAGGAGTACGTTGCAGAACCAACACTTTAGTTTCCCTGCATTTCAGCTTGTTG ATTTCCAGTTCTTTTGTGCAGTTTGTTTGTCGAAATCTGCAGTTCATGTAGTTTTCATGTTATTTTAGTTTGTTTGACTG TTTTGTAATCGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0714000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCAACAACCCTTCGGACGCTCCCGCCGCCGACGACTTCCTCGAGCAAATCCTCGGCCTCCCGCCCTTCGGCTCCGG CGACTCTGGCTTAGTCGGACCCGACATCGGACTTGCCGGTACGGCTCCGATGATGCTTCAGCTCAACTCCGCCGATCATG GCAACCATCATCACCTCGCCGCCGGTGGTCCCTTTCATGCACCTGTGTACCAGTTAGGGTTGAGCTTGGACCAAGGGAAA GTAGTAGGAGGAGGAGGGTTCTTGAAGCCCGAGGACGCTTCTGGTAGTGGAAAGCGTTTCCGTGACGACGTCGTTGATGG TAGACCTAAGAATGTTTATCATGGGCAGCCCATGTCTACTACGATGCCTGCTGCTCCCCATCCTCCAGCCATGCGTCCTA GGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAAAGAATAGCAGAAAGA ATTAGGGCATTGCAAGAGCTGGTTCCAAGTGTCAACAAGACTGATAGAGCCGCCATGTTAGATGAAATAGTGGATTATGT GAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGCGGAGCAGGTGCAGTGGCACCACTGGTAACTG ATATCCCATTATCGTCAGTGGAGGAAGAAGGCGGTGAAGGTGCGAGAAACCGACCAGCTTGGGACAAGTGGTCAAATGAT GGTACAGAAAAACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAATTTCTTCAATCAAAGGCACTCTG CATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAACCACCGGATAGCTCTAGTATGGTCAAGCCGGAAACTA ATCCTCCTTCATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0714000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MANNPSDAPAADDFLEQILGLPPFGSGDSGLVGPDIGLAGTAPMMLQLNSADHGNHHHLAAGGPFHAPVYQLGLSLDQGK VVGGGGFLKPEDASGSGKRFRDDVVDGRPKNVYHGQPMSTTMPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAER IRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSND GTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSMVKPETNPPS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR16223:SF155
7 287 281 8.0E-147 –
PANTHER
PTHR16223
7 287 281 8.0E-147 –
MobiDBLite
mobidb-lite
87 145 59 - –
MobiDBLite
mobidb-lite
94 109 16 - –
Gene3D
G3DSA:4.10.280.10
134 191 58 1.9E-13
IPR036638
SUPERFAMILY
SSF47459
139 200 62 3.4E-15
IPR036638
ProSiteProfiles
PS50888
141 190 50 16.12
IPR011598
Pfam
PF00010
146 190 45 7.7E-8
IPR011598
SMART
SM00353
147 196 50 9.5E-11
IPR011598

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0714000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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