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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0714000 |
Transcript ID | LotjaGi1g1v0714000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Basic helix-loop-helix transcription factor; TAIR: AT4G02590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|O22768|UNE12_ARATH Transcription factor UNE12; TrEMBL-Plants: tr|C0JP11|C0JP11_LOTJA Putative basic helix-loop-helix protein BHLH3; Found in the gene: LotjaGi1g1v0714000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128224017..128226298) extracted from Lotus japonicus Gifu genome v1.2.
AAATTCAATCCTGTTGCAAAGTGTTAACTTAACATGGATTGGCTTGAACATTTCCGGATTATGATTAAGTTAGGTCGTTT ATGATTGAGTTTTTTTTGTTGCTTTTCTGGGATCTTTGGACCTTTAATGTCAAATATATACTCTGAGCATCCTTGAATAA ATGATCTCTTGTTGTGGAGAGTTTTTTTTTTCTTCCTTTTCCTCTTTATTGTTCTCACTAGTTTTTTCTGAGAGGGTAAA GGGGGAGTTGATCAAGTATAAATTTTTCTCCTATTGATGATCTATAACCTTATTGCAGGTTTATCATGGGCAGCCCATGT CTACTACGATGCCTGCTGCTCCCCATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCA CACAGCATAGCTGAAAGGGTGAGCTTCAGGATATTTGCATGAATACAGACTGTTTGCTGGTTATGAATTTATGATGTTCA ACATTTATTTTGTGGGTTAACTTCATAGCTCATTTTCTTCTTTGATTACAGTTGCGCAGAGAAAGAATAGCAGAAAGAAT TAGGGCATTGCAAGAGCTGGTTCCAAGTGTCAACAAGGTATGTGATTTCTCTTGAATATCATTTTGATTTTATTACAAAA TGTGATTTTGCATTTGTCTTTGGCAAGAGTGAATTTGTCTTTGGTAAAGTAAGGCATCTATGTTATGTATAGCTTGAAAT GTTAAAATGATAGAGTATGGAGTTGACATATACAGATGCATACATTATAATTCTCTCCACTTTTTAGTTCGCTGATTTGA TAATGACACATAGTTTGTTGCCTATTTTGTGTGGGTAGATTCATATTTTCTGAACAAAAATGATATTACTCATCAATTAT TCCAAAAAAACGAAATTGTGATTTTTTTTAGGTGTGTATTTTCTGTCTTTGTAGACATTGTTCGTTGCATAATTGTTTAG CATCACATCACCATCTCCACTGCCGTTCTTGAAAAGAATTGTGGATGGAGTTTGTTCACATCACATATATGTAAAATCTA CTGATCCATTTTTTATGCATTGTACTGTGGTGTAATTAGACATGGAAGTCTTGCTTCTCATAAATGGATAAAAAAGTTGA ATAGCATCTGCATATATTCTAATTTGGTTTGTATCAAATTTTGGAGTGCTTGATTATGAGATAAATCTACTTGACTTTAA GGGGTGATAGTTTTTGTATTATGTTGAATAGCAGCTGCATGACTGCTGTGTTTGTAAAGAAGATAATATGCTGAATCATT CCATTCTTTCTAATATTATGTTGCATTTGTACTCTGTTCAGACTGATAGAGCCGCCATGTTAGATGAAATAGTGGATTAT GTGAAGTTCTTAAGGCTTCAAGTGAAGGTAACATGCTACTCTGCTCTTTATGGATCCTGTGTTTAATTCAGGTCAAAATT TGTTATTAATGACAGTTTATAATGCCCTTTCTCCGGATTACTGGTTTTTCTTGTTAAATCCGTTAACCTATTATTTTTTG TGCCCCCACATCACTGAGGTGTATTAGTTAGGATTCAACTCATTGTCGTGAACCCCGCTAAAGGGTGGTTTCCACTTGGA CGAGAACCCATTGGCCAATGAATATTATCCCTCAAGCCTGGGGAATATCTAAATACAATCAAATAATGATAGCATTCTCA GGTTGCTTAATGCACCGTAGTTACTTCTAACTATCCAATCATTTGTAAGGGTCTTCTGTTGGAATAGATATTTCTGTTTG ATCCATGATTTAAATATGAAGGAAAAAGGCTCCTTTCTCAATCCAAAATTGAATTTTATGCAGTGTGAAATTAAGAGTTC AAACGACTTCCAATGACTGTCAATTGATCTGCCTTTCAGGTTTTGAGCATGAGTAGATTGGGCGGAGCAGGTGCAGTGGC ACCACTGGTAACTGATATCCCATTATCGTCAGTGGAGGTAATTATTTGAGGAACAAGTATCTACAAAAAATAAATATGCG TTTAATATCTTTAAGCAATCTAAACATTTTCTGGTGAATGGTGATAATCAGGAAGAAGGCGGTGAAGGTGCGAGAAACCG ACCAGCTTGGGACAAGTGGTCAAATGATGGTACAGAAAAACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCA TGCAATTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAACCACCGGAT AGCTCTAGTATGGTCAAGCCGGAAACTAATCCTCCTTCATAA
CDS sequence (LotjaGi1g1v0714000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACTACGATGCCTGCTGCTCCCCATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGA TCCACACAGCATAGCTGAAAGGTTGCGCAGAGAAAGAATAGCAGAAAGAATTAGGGCATTGCAAGAGCTGGTTCCAAGTG TCAACAAGACTGATAGAGCCGCCATGTTAGATGAAATAGTGGATTATGTGAAGTTCTTAAGGCTTCAAGTGAAGGTTTTG AGCATGAGTAGATTGGGCGGAGCAGGTGCAGTGGCACCACTGGTAACTGATATCCCATTATCGTCAGTGGAGGAAGAAGG CGGTGAAGGTGCGAGAAACCGACCAGCTTGGGACAAGTGGTCAAATGATGGTACAGAAAAACAGGTAGCTAAGCTTATGG AAGAAAATGTTGGGGCTGCCATGCAATTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATA TACCAGTCACAACCACCGGATAGCTCTAGTATGGTCAAGCCGGAAACTAATCCTCCTTCATAA
Protein sequence (LotjaGi1g1v0714000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTMPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVL SMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAI YQSQPPDSSSMVKPETNPPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 170 | 170 | 3.1E-96 | – | |
PANTHER | 1 | 170 | 170 | 3.1E-96 | – | |
MobiDBLite | 1 | 29 | 29 | - | – | |
Gene3D | 17 | 74 | 58 | 7.9E-14 | ||
SUPERFAMILY | 22 | 83 | 62 | 1.27E-15 | ||
ProSiteProfiles | 24 | 73 | 50 | 16.12 | ||
Pfam | 29 | 73 | 45 | 3.3E-8 | ||
SMART | 30 | 79 | 50 | 9.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0714000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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