Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0719400 |
| Transcript ID | LotjaGi1g1v0719400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | zinc finger (AN1-like) family protein; TAIR: AT2G41835.1 zinc finger (C2H2 type, AN1-like) family protein; Swiss-Prot: sp|Q0D5B9|SAP16_ORYSJ Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16; TrEMBL-Plants: tr|C6TE01|C6TE01_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0719400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128971552..128973239) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGACTCCCGAATTTCCCGATCTTGGCAAACATTGCTCCGTCGCTGATTGCAAGCTCATCGATTTCTTGCCCTTCAC CTGCGATCGCTGCAATCAGGTACCTTTCTCAAATCTGGTATATTGGTTTATTGTAAATCATTTACTTTGCTGAAAATGAA TTGAACCATGTGTTTCCAAATCATATATTATTATTATTCAAGGACGAATTGCATTCAAGTTTCTATTGATTATATACATG AGCATGCCGGATATGTTTGGTTGTGTTTTAGCTGAACATTTATCTTAGTTCCGATAAGCATTTTTTTGACCATCAAGTTC ATGGGGTTTCAAATAGTTGGTAGTGATTATGCATGATGGCTTTATCAGGATGTACCATTATCATGTTGGCCCCAACTCCA AAGTACTGGAGCATAGAGACTTTGATCCCAGATTCATGAACCAATTATCCCTAATGGTTTAGTCGTGTGTTTGGATTTCC ATTGAACTCAATGTGGATCCATGTCGAAGCTAACGTGGCAAAATCTTGCTTCTCCAATCCACGTTAAATTGAACGTGACA AATTCTAGCTTACCTTTAGTACCTTGAGTTGCGTGAAATCACATTTGCATTTGCGCCAACACCAAACTAAGCATACACTA AGTATGTGTATGTTTTTGTGTTCGTATCAACACAAATTTGATTTCAAATATCTTAGGACACAAAGGGAGAAGCAGAATTT TGCAATGTTTAGTTCAACGTGAATCGGCATTGAGTCCAAGGGAAATCCAATTACACACTAAGTTGTTAAGTCAAGATATA TGAGTAATTTTATAATTATATTTCTATGATGGGATTATGGATGACTATTCTCTTTGTTTTCAATTATGAAACTCTTTGTT TTGGCTATAACTATATCTGCTCAATATCTTGCAGGTATATTGTTTGGAGCACCGAAGTTATATAAAGCATCAGTGTACTA AAGCTGACAAACGAGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAATTCCAGAACAAGATCCA AACATAACTTGGGAGAATCACGTTAACACCGACTGTGACCCATCAAATTATGAGAAAGCCACAAAGAAGATAAAATGCCC GGTCCCTGGGTGCAGGGAGATCTTGGTGTTCTCAAACACAATCAAGTGCAGGGACTGCTTGGTTGACCATTGTTTGAAGC ACCGGTTTGGACCTGATCACAAATGTTCCGGACCCAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTTTTATGAATAGG AGTAGAAAAGATGCGCCAAAACCCAATTTAACTTCATCCTCATCATCGAACTGGACTACAAGCTTTCTTAACATGGCTTC GAATATTCGAGCTTCAGCTGAAGCGAGCATATCAAAATTGAGTGGTGAAACTAACCAAGCCATGCAGACATCACGGGGTG GTGTGGGACAGAGCAGTGGCAGTGGGAATAGAAATTATCAAGCGGAGCAATGCCCTCAGTGCAGCGCGAAGTTTTCCTCA GTCACTGCACTGGTGGATCATGTTCAAAAAGTTCATGAAAGGAGTGGCAACCGATCTGGGGTGAAGAAGACAATTGATGC ATGTCCCAAGTGTAGTAAAGGATTTCTAGACCCGGTTTCGCTTGTAGAGCATGTTGAAAGGGATCATGGTGGTAGTTCTA GAGCATAG
CDS sequence (LotjaGi1g1v0719400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGACTCCCGAATTTCCCGATCTTGGCAAACATTGCTCCGTCGCTGATTGCAAGCTCATCGATTTCTTGCCCTTCAC CTGCGATCGCTGCAATCAGGTACCTTTCTCAAATCTGGACACAAAGGGAGAAGTATATTGTTTGGAGCACCGAAGTTATA TAAAGCATCAGTGTACTAAAGCTGACAAACGAGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTA ATTCCAGAACAAGATCCAAACATAACTTGGGAGAATCACGTTAACACCGACTGTGACCCATCAAATTATGAGAAAGCCAC AAAGAAGATAAAATGCCCGGTCCCTGGGTGCAGGGAGATCTTGGTGTTCTCAAACACAATCAAGTGCAGGGACTGCTTGG TTGACCATTGTTTGAAGCACCGGTTTGGACCTGATCACAAATGTTCCGGACCCAAAAAGTTGGAAACAAGTTTTTCATTT ATGAGTTTTATGAATAGGAGTAGAAAAGATGCGCCAAAACCCAATTTAACTTCATCCTCATCATCGAACTGGACTACAAG CTTTCTTAACATGGCTTCGAATATTCGAGCTTCAGCTGAAGCGAGCATATCAAAATTGAGTGGTGAAACTAACCAAGCCA TGCAGACATCACGGGGTGGTGTGGGACAGAGCAGTGGCAGTGGGAATAGAAATTATCAAGCGGAGCAATGCCCTCAGTGC AGCGCGAAGTTTTCCTCAGTCACTGCACTGGTGGATCATGTTCAAAAAGTTCATGAAAGGAGTGGCAACCGATCTGGGGT GAAGAAGACAATTGATGCATGTCCCAAGTGTAGTAAAGGATTTCTAGACCCGGTTTCGCTTGTAGAGCATGTTGAAAGGG ATCATGGTGGTAGTTCTAGAGCATAG
Protein sequence (LotjaGi1g1v0719400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTPEFPDLGKHCSVADCKLIDFLPFTCDRCNQVPFSNLDTKGEVYCLEHRSYIKHQCTKADKRDVTVVICPLCAKGVRL IPEQDPNITWENHVNTDCDPSNYEKATKKIKCPVPGCREILVFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKLETSFSF MSFMNRSRKDAPKPNLTSSSSSNWTTSFLNMASNIRASAEASISKLSGETNQAMQTSRGGVGQSSGSGNRNYQAEQCPQC SAKFSSVTALVDHVQKVHERSGNRSGVKKTIDACPKCSKGFLDPVSLVEHVERDHGGSSRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 300 | 300 | 9.0E-151 | – | |
| PANTHER | 1 | 300 | 300 | 9.0E-151 | – | |
| Gene3D | 2 | 69 | 68 | 5.0E-11 | ||
| SUPERFAMILY | 6 | 63 | 58 | 1.59E-8 | ||
| SMART | 13 | 63 | 51 | 0.15 | ||
| Gene3D | 91 | 161 | 71 | 7.5E-8 | ||
| SUPERFAMILY | 104 | 154 | 51 | 3.14E-8 | ||
| SMART | 110 | 140 | 31 | 140.0 | ||
| SMART | 112 | 153 | 42 | 0.047 | ||
| Pfam | 112 | 152 | 41 | 1.5E-7 | ||
| MobiDBLite | 206 | 232 | 27 | - | – | |
| Gene3D | 211 | 298 | 88 | 9.1E-9 | – | |
| SMART | 235 | 258 | 24 | 0.0094 | ||
| ProSiteProfiles | 235 | 263 | 29 | 8.683 | ||
| Pfam | 236 | 258 | 23 | 4.0E-4 | – | |
| ProSitePatterns | 237 | 258 | 22 | - | ||
| ProSiteProfiles | 272 | 300 | 29 | 8.808 | ||
| SMART | 272 | 295 | 24 | 14.0 | ||
| ProSitePatterns | 274 | 295 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0719400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…