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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0720900 |
| Transcript ID | LotjaGi1g1v0720900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain-containing protein; TAIR: AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain-containing protein; Swiss-Prot: sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30; TrEMBL-Plants: tr|A0A1J7HTW3|A0A1J7HTW3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0720900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129163421..129167544) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAATGAGAAAAGAGAGTGCATAGGAAGTGGAGAAAGAAAGAAAGCAGAAGGTCTCTTTTAGTCGCTGGCTCCTCATT ATTTCTCACGATTTCCTCTAATTTTCTCGCCAGATTTTCTCGTCAGATTTTCTCGGAATCCAAACACAAACGCTGTTCAA CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTCCTCACCCGTGAGATCCGAGGGCCCCTCACTCTCTCACGTGTTGTT GTTGTTGTCGTCGTCTTCATCCTTTGCCAGTGAATATAGCTTGGTAAGATTCACTTGCTCAGATCACTTTCAAGTTTAGG TTTCCGAATCCCCTTTTCCCGCCTCTTCCATCTCGCTCTGCGCAAAACATGCTACACGTTAGCGTGATCCTTAATCGATC TTCGTGTCTTTTTTCGTCGAATGATGCTGTTCCGTAAATCTAGGTTTTTGTTTTGTTTTTGTTTTTGTTTTTGTTTTCAT TGTTAATTTGTAGTTTAAGGATTGAGTTCACTTGATGGGTTTGGGTTTGATTTCATGAGAAGTTTGTTTTCTTTTCCAAT TTCTATTTTTTCTGCTGATTTTATAAAAAAAGTGAAAATTTATACTTTGGTCTTTGTGGGTTTTTGGATATGTGAAGAAA AATTGAACCTTTTACATAGATGAGTTAGTTATAATTGTGAAAAACACTATTTTTTGAAGTACTTTACCTTGTTTAGTTTA GATGTTTCAATTGGTGTTTACTTATCTGCAGTATCTCTATGTAATGTGTCTGTGGGATGTGTTTTGATGCATTTGGATTT TGGATGTATCATGCTTCTACTTCTTGTTTAATGCAATTTTGGTTATCTGTCTTTCAAGACCTTTAATCTGTTGTTTGATG TCATTTTTTATTTTCTCAGCTGAATCTGTTGCAAATGAAAGGATGTGCTGTGAGTTTGAGCGGTTAAATCCTGCACCGTC TCTGTCGTTATCTCCTACTTTGACACGCGCCGTTGCATCGAGAAACTACGTGATGAATCACTTTACTGTTGACACTGGAG ATTCTCTCGCGAGCCTGCTTGAGCTTGCAGCCAATAATGATGTTGAAGGTTTCAAAAGATTGATCGAGTGTGATCCTTCC TCTGTGGATGAGGTTGGGTTGTGGTATGGTCGTAGGAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGAT GGTTGCTGCTACCTATGGTAGCATTGATATCATGAAACTGATTCTTGCTGTATCTGATGTTGACATCAACCGACCGTGTG GTCTTGACAAGAGCACTGCCCTTCATTGTGCGGCATCAGGTGGGGCTGAAAACGCGGTTGAAGCTGTGAGACTGCTTCTG GCTGCAGGGGCTGATCCGAATTCTGTGGATGCCAATGGGCATAAACCTGTAGATGTTATTGTTTTCCCTCCCAAGCTTGA ACATGTCAAAAACAGTCTTGAAGAGCTTCTTCAAGCTGATGATTCTGATGCTGGAGGGTGTAATCTTAGGGTGATCACAA CCTCATTGAATGCATATTCACTTCCTTTATCAACTTCACCTGAGAACGGGTCTCCTTCCGCACTGGATCTCCAGTTGAAG TCAAAGTCAAGTGATGTCCCTGCTTTTTCTGTATCTGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCAGACATCAA GAACAGCATATATTCAACTGATGAATTCCGGATGTATTCTTTCAAGGTTCGGCCTTGCTCCCGTGCTTATTCACATGATT GGACAGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGTAGAAGGGACCCCAGAAAGTACCATTACAGCTGTGTCCCT TGTCCTGATTTTCGTAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATGCTCATGGGGTATTTGAGTGCTGGCTGCA TCCAGCACAGTATCGAACTCGTCTCTGCAAGGATGGGACAAATTGCTCCAGAAGAATTTGCTTCTTTGCTCATACTGCTG AAGAGCTTAGACCATTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGAGCAAACGCATCTTCTGCCATGGATTTT GCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCGTCGATGTCTGTGATGTCTCCTTCAGCATTCACTCCTCCTATGTC ACCTTCTGCCAACGGCATTTCACACTCTTCTGTTGCTTGGCCTCAGCCAAACATCCCTGCATTGCATCTTCCAGGAAGTA ATCTTCAGTCCAGTCGTCTGAGATCTTCACTCCATGCTAGAGATATTCCTTTTGATGATTTTGACATGTTATCTGATTAT GATCAACAACAGCTGCTTAATGAGTTAGCATGCCTCTCTCCCCGGCCTATGAATTCTAACCCTCTAAATCGCTCCGGACG GATGAAACCCCTGACTCCTTCTAATCTTGATGAGCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATATGCTGATCCAACAC TGAATTCAGCTGTCTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTTTCAGCAGCAGCAAAGCATGTTGTCACCT GTGAATACAAATTTTTCTCCCAAAAATGCTGAGCATCCTTTTCTGCAGGCTTCTTTTGGGGTTCAGACGCCAGGCAGAAT GTCTCCAAGGAATGTCGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACATGAGAAACAACACCAGT TTCGTAGCCTAAGCTTCCGGGAACTTGGCTCCAACTCTGCTGCTGCAGCTGCTGCGGCCTCAGCCAATTCTTGGTCAAAA TGGGACTCCCCCAATGGTAAGCTGGATTGGGCAGTCAGTGCAGATGAATTAGGTAAGCTTCGGAGATCATCTTCGTTTGA GCTTGGGAACAATGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTTAAAGAATCTCCAAATGAGACTAAAGAGA AATCGTCAACTGCTGTCTCAAGTGTTGCAGCTGCTGGATCCTCCGCTGAGGGATCAAATATGAACACCCAAATGGAGTCC GTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGAAAGGAGTT TGGCTGATCCTGAGGTAGTTAACAACAAAATGGATTCAGTAAATACTATATTTATATATGCTTTTTTAAAGTTTTTTGTT GATGGAAGAAGATTACAGTAACTAAGAAAGGAAGCAGAAAGAAAAAGAGCGAGGGGGCGAAATTCATTTTCAAGTTTAGT ATTACAAAGAAGTAACTTAGAAGGGTCAGAAAACCACTAGGTTGGCATTGAAACAATTGATGCCAGTGCAGGGTTTTTTT GGCTGCCAATCTTTTCAATTCTTAGGTTCACATTGCTGTCATTTTTTGCTTCCAGGAGGAGCAAATGTTCTATCAAAATG AAGTCCTATTCCTAGGTTTTACCTATCTTATTTTTATTTGTTTTTATTTTGGGTAGAAAAGGAAGTTACAAAAGGGTCAT TGGAGTTGATTTCCCTGAGTCTCCATTTTGGTTCAGTTTTGGGGATGGAAATACAATGTATTGGCCTTGATATTTCTCAT GTAATTTGGAATCAATAATTGTAGCTAAGATGCCAGGGAGTGGGAAAATTAGGGATATTTGAAGATTTCCTTTGGGCATG TAACATTCAATTGAAGTTTATTGATATATTATTTTTGATATATTATTTTAATACCTTTGTTTCTATTTTTCAAGTGGATC CTACTATTGTACCCATTTTTATTTGGACCTGGTTATTACTTGTAATTTTCTTACTGTGTAATCATTTGTTTATATAATTA TATCGGTGATGACATGCAATTTTTTATGAACTGGTGATGATCTCAATCATGAAGTGCGGTTCTCAATCCTTGTAAACTGT AGATGATCTTAATCATGAATTGTATTTCTCAATCCTGTCATTAAGTAGAGGGTGAATGTCAGAACTTCACTTTGTTCAGT TTCTTCTTGACCTGATCATGCCTGGCTTGTTTCTATTCTTCACTTATAAAGTTTGAAAAAGAGACATGAACCTTAACATT TTGCTCCTTTTCTGAAAAAAAGAAAGAAAGAAGAGCGACCCAAT
CDS sequence (LotjaGi1g1v0720900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCTGTGAGTTTGAGCGGTTAAATCCTGCACCGTCTCTGTCGTTATCTCCTACTTTGACACGCGCCGTTGCATCGAG AAACTACGTGATGAATCACTTTACTGTTGACACTGGAGATTCTCTCGCGAGCCTGCTTGAGCTTGCAGCCAATAATGATG TTGAAGGTTTCAAAAGATTGATCGAGTGTGATCCTTCCTCTGTGGATGAGGTTGGGTTGTGGTATGGTCGTAGGAAGGGA TCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATCATGAAACTGAT TCTTGCTGTATCTGATGTTGACATCAACCGACCGTGTGGTCTTGACAAGAGCACTGCCCTTCATTGTGCGGCATCAGGTG GGGCTGAAAACGCGGTTGAAGCTGTGAGACTGCTTCTGGCTGCAGGGGCTGATCCGAATTCTGTGGATGCCAATGGGCAT AAACCTGTAGATGTTATTGTTTTCCCTCCCAAGCTTGAACATGTCAAAAACAGTCTTGAAGAGCTTCTTCAAGCTGATGA TTCTGATGCTGGAGGGTGTAATCTTAGGGTGATCACAACCTCATTGAATGCATATTCACTTCCTTTATCAACTTCACCTG AGAACGGGTCTCCTTCCGCACTGGATCTCCAGTTGAAGTCAAAGTCAAGTGATGTCCCTGCTTTTTCTGTATCTGAGAAG AAAGAATATCCTGTTGATCCATCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGGATGTATTCTTT CAAGGTTCGGCCTTGCTCCCGTGCTTATTCACATGATTGGACAGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGTA GAAGGGACCCCAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGTAAGGGTGCTTGCCGGCGAGGAGATATG TGTGAATATGCTCATGGGGTATTTGAGTGCTGGCTGCATCCAGCACAGTATCGAACTCGTCTCTGCAAGGATGGGACAAA TTGCTCCAGAAGAATTTGCTTCTTTGCTCATACTGCTGAAGAGCTTAGACCATTATATGTTTCAACTGGTTCTGCTGTTC CCTCTCCTCGAGCAAACGCATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCGTCGATG TCTGTGATGTCTCCTTCAGCATTCACTCCTCCTATGTCACCTTCTGCCAACGGCATTTCACACTCTTCTGTTGCTTGGCC TCAGCCAAACATCCCTGCATTGCATCTTCCAGGAAGTAATCTTCAGTCCAGTCGTCTGAGATCTTCACTCCATGCTAGAG ATATTCCTTTTGATGATTTTGACATGTTATCTGATTATGATCAACAACAGCTGCTTAATGAGTTAGCATGCCTCTCTCCC CGGCCTATGAATTCTAACCCTCTAAATCGCTCCGGACGGATGAAACCCCTGACTCCTTCTAATCTTGATGAGCTCTTTTC TGCTGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGAATTCAGCTGTCTTTTCTCCAACTCACAAATCAGCTGTCT TTAATCAGTTTCAGCAGCAGCAAAGCATGTTGTCACCTGTGAATACAAATTTTTCTCCCAAAAATGCTGAGCATCCTTTT CTGCAGGCTTCTTTTGGGGTTCAGACGCCAGGCAGAATGTCTCCAAGGAATGTCGAACCTATTTCTCCAATGAGCTCTAG GATTTCTATGCTAGCTCAACATGAGAAACAACACCAGTTTCGTAGCCTAAGCTTCCGGGAACTTGGCTCCAACTCTGCTG CTGCAGCTGCTGCGGCCTCAGCCAATTCTTGGTCAAAATGGGACTCCCCCAATGGTAAGCTGGATTGGGCAGTCAGTGCA GATGAATTAGGTAAGCTTCGGAGATCATCTTCGTTTGAGCTTGGGAACAATGGCGAGGAGCCTGATTTATCATGGGTGCA GTCACTTGTTAAAGAATCTCCAAATGAGACTAAAGAGAAATCGTCAACTGCTGTCTCAAGTGTTGCAGCTGCTGGATCCT CCGCTGAGGGATCAAATATGAACACCCAAATGGAGTCCGTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAG CTTGATCATCTTGTGGCTCAGCAAAACTGA
Protein sequence (LotjaGi1g1v0720900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCCEFERLNPAPSLSLSPTLTRAVASRNYVMNHFTVDTGDSLASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKG SKQMVNEQRTPLMVAATYGSIDIMKLILAVSDVDINRPCGLDKSTALHCAASGGAENAVEAVRLLLAAGADPNSVDANGH KPVDVIVFPPKLEHVKNSLEELLQADDSDAGGCNLRVITTSLNAYSLPLSTSPENGSPSALDLQLKSKSSDVPAFSVSEK KEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDM CEYAHGVFECWLHPAQYRTRLCKDGTNCSRRICFFAHTAEELRPLYVSTGSAVPSPRANASSAMDFAAAMSMLPGSPSSM SVMSPSAFTPPMSPSANGISHSSVAWPQPNIPALHLPGSNLQSSRLRSSLHARDIPFDDFDMLSDYDQQQLLNELACLSP RPMNSNPLNRSGRMKPLTPSNLDELFSAESSSPRYADPTLNSAVFSPTHKSAVFNQFQQQQSMLSPVNTNFSPKNAEHPF LQASFGVQTPGRMSPRNVEPISPMSSRISMLAQHEKQHQFRSLSFRELGSNSAAAAAAASANSWSKWDSPNGKLDWAVSA DELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPNETKEKSSTAVSSVAAAGSSAEGSNMNTQMESVDHAVLGTWLEQMQ LDHLVAQQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 727 | 697 | 0.0 | – | |
| PANTHER | 31 | 727 | 697 | 0.0 | – | |
| Gene3D | 40 | 181 | 142 | 4.3E-20 | ||
| SMART | 40 | 70 | 31 | 4200.0 | ||
| SUPERFAMILY | 45 | 169 | 125 | 1.45E-16 | ||
| Pfam | 48 | 156 | 109 | 1.1E-10 | ||
| ProSiteProfiles | 87 | 190 | 104 | 16.361 | ||
| SMART | 87 | 117 | 31 | 0.019 | ||
| ProSiteProfiles | 122 | 157 | 36 | 11.3 | ||
| SMART | 122 | 154 | 33 | 0.0015 | ||
| Gene3D | 298 | 368 | 71 | 2.5E-6 | – | |
| SMART | 301 | 327 | 27 | 4.0E-6 | ||
| ProSiteProfiles | 306 | 328 | 23 | 13.582 | ||
| Pfam | 306 | 326 | 21 | 7.1E-5 | ||
| SMART | 336 | 359 | 24 | 33.0 | ||
| MobiDBLite | 672 | 700 | 29 | - | – | |
| MobiDBLite | 679 | 700 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0720900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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