Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0720900 |
| Transcript ID | LotjaGi1g1v0720900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain-containing protein; TAIR: AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain-containing protein; Swiss-Prot: sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30; TrEMBL-Plants: tr|A0A1J7HTW3|A0A1J7HTW3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0720900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129164433..129166814) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATCACTTTACTGTTGACACTGGAGATTCTCTCGCGAGCCTGCTTGAGCTTGCAGCCAATAATGATGTTGAAGGTTT CAAAAGATTGATCGAGTGTGATCCTTCCTCTGTGGATGAGGTTGGGTTGTGGTATGGTCGTAGGAAGGGATCAAAGCAGA TGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATCATGAAACTGATTCTTGCTGTA TCTGATGTTGACATCAACCGACCGTGTGGTCTTGACAAGAGCACTGCCCTTCATTGTGCGGCATCAGGTGGGGCTGAAAA CGCGGTTGAAGCTGTGAGACTGCTTCTGGCTGCAGGGGCTGATCCGAATTCTGTGGATGCCAATGGGCATAAACCTGTAG ATGTTATTGTTTTCCCTCCCAAGCTTGAACATGTCAAAAACAGTCTTGAAGAGCTTCTTCAAGCTGATGATTCTGATGCT GGAGGGTGTAATCTTAGGGTGATCACAACCTCATTGAATGCATATTCACTTCCTTTATCAACTTCACCTGAGAACGGGTC TCCTTCCGCACTGGATCTCCAGTTGAAGTCAAAGTCAAGTGATGTCCCTGCTTTTTCTGTATCTGAGAAGAAAGAATATC CTGTTGATCCATCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGGATGTATTCTTTCAAGGTTCGG CCTTGCTCCCGTGCTTATTCACATGATTGGACAGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGTAGAAGGGACCC CAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGTAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATG CTCATGGGGTATTTGAGTGCTGGCTGCATCCAGCACAGTATCGAACTCGTCTCTGCAAGGATGGGACAAATTGCTCCAGA AGAATTTGCTTCTTTGCTCATACTGCTGAAGAGCTTAGACCATTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCG AGCAAACGCATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCGTCGATGTCTGTGATGT CTCCTTCAGCATTCACTCCTCCTATGTCACCTTCTGCCAACGGCATTTCACACTCTTCTGTTGCTTGGCCTCAGCCAAAC ATCCCTGCATTGCATCTTCCAGGAAGTAATCTTCAGTCCAGTCGTCTGAGATCTTCACTCCATGCTAGAGATATTCCTTT TGATGATTTTGACATGTTATCTGATTATGATCAACAACAGCTGCTTAATGAGTTAGCATGCCTCTCTCCCCGGCCTATGA ATTCTAACCCTCTAAATCGCTCCGGACGGATGAAACCCCTGACTCCTTCTAATCTTGATGAGCTCTTTTCTGCTGAGAGT TCTTCTCCTCGATATGCTGATCCAACACTGAATTCAGCTGTCTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTT TCAGCAGCAGCAAAGCATGTTGTCACCTGTGAATACAAATTTTTCTCCCAAAAATGCTGAGCATCCTTTTCTGCAGGCTT CTTTTGGGGTTCAGACGCCAGGCAGAATGTCTCCAAGGAATGTCGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATG CTAGCTCAACATGAGAAACAACACCAGTTTCGTAGCCTAAGCTTCCGGGAACTTGGCTCCAACTCTGCTGCTGCAGCTGC TGCGGCCTCAGCCAATTCTTGGTCAAAATGGGACTCCCCCAATGGTAAGCTGGATTGGGCAGTCAGTGCAGATGAATTAG GTAAGCTTCGGAGATCATCTTCGTTTGAGCTTGGGAACAATGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTT AAAGAATCTCCAAATGAGACTAAAGAGAAATCGTCAACTGCTGTCTCAAGTGTTGCAGCTGCTGGATCCTCCGCTGAGGG ATCAAATATGAACACCCAAATGGAGTCCGTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAGCTTGATCATC TTGTGGCTCAGCAAAACTGAAAGGAGTTTGGCTGATCCTGAGGTAGTTAACAACAAAATGGATTCAGTAAATACTATATT TATATATGCTTTTTTAAAGTTTTTTGTTGATGGAAGAAGATTACAGTAACTAAGAAAGGAAGCAGAAAGAAAAAGAGCGA GGGGGCGAAATTCATTTTCAAGTTTAGTATTACAAAGAAGTAACTTAGAAGGGTCAGAAAACCACTAGGTTGGCATTGAA ACAATTGATGCCAGTGCAGGGTTTTTTTGGCTGCCAATCTTTTCAATTCTTAGGTTCACATT
CDS sequence (LotjaGi1g1v0720900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCACTTTACTGTTGACACTGGAGATTCTCTCGCGAGCCTGCTTGAGCTTGCAGCCAATAATGATGTTGAAGGTTT CAAAAGATTGATCGAGTGTGATCCTTCCTCTGTGGATGAGGTTGGGTTGTGGTATGGTCGTAGGAAGGGATCAAAGCAGA TGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATCATGAAACTGATTCTTGCTGTA TCTGATGTTGACATCAACCGACCGTGTGGTCTTGACAAGAGCACTGCCCTTCATTGTGCGGCATCAGGTGGGGCTGAAAA CGCGGTTGAAGCTGTGAGACTGCTTCTGGCTGCAGGGGCTGATCCGAATTCTGTGGATGCCAATGGGCATAAACCTGTAG ATGTTATTGTTTTCCCTCCCAAGCTTGAACATGTCAAAAACAGTCTTGAAGAGCTTCTTCAAGCTGATGATTCTGATGCT GGAGGGTGTAATCTTAGGGTGATCACAACCTCATTGAATGCATATTCACTTCCTTTATCAACTTCACCTGAGAACGGGTC TCCTTCCGCACTGGATCTCCAGTTGAAGTCAAAGTCAAGTGATGTCCCTGCTTTTTCTGTATCTGAGAAGAAAGAATATC CTGTTGATCCATCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGGATGTATTCTTTCAAGGTTCGG CCTTGCTCCCGTGCTTATTCACATGATTGGACAGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGTAGAAGGGACCC CAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGTAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATG CTCATGGGGTATTTGAGTGCTGGCTGCATCCAGCACAGTATCGAACTCGTCTCTGCAAGGATGGGACAAATTGCTCCAGA AGAATTTGCTTCTTTGCTCATACTGCTGAAGAGCTTAGACCATTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCG AGCAAACGCATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCGTCGATGTCTGTGATGT CTCCTTCAGCATTCACTCCTCCTATGTCACCTTCTGCCAACGGCATTTCACACTCTTCTGTTGCTTGGCCTCAGCCAAAC ATCCCTGCATTGCATCTTCCAGGAAGTAATCTTCAGTCCAGTCGTCTGAGATCTTCACTCCATGCTAGAGATATTCCTTT TGATGATTTTGACATGTTATCTGATTATGATCAACAACAGCTGCTTAATGAGTTAGCATGCCTCTCTCCCCGGCCTATGA ATTCTAACCCTCTAAATCGCTCCGGACGGATGAAACCCCTGACTCCTTCTAATCTTGATGAGCTCTTTTCTGCTGAGAGT TCTTCTCCTCGATATGCTGATCCAACACTGAATTCAGCTGTCTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTT TCAGCAGCAGCAAAGCATGTTGTCACCTGTGAATACAAATTTTTCTCCCAAAAATGCTGAGCATCCTTTTCTGCAGGCTT CTTTTGGGGTTCAGACGCCAGGCAGAATGTCTCCAAGGAATGTCGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATG CTAGCTCAACATGAGAAACAACACCAGTTTCGTAGCCTAAGCTTCCGGGAACTTGGCTCCAACTCTGCTGCTGCAGCTGC TGCGGCCTCAGCCAATTCTTGGTCAAAATGGGACTCCCCCAATGGTAAGCTGGATTGGGCAGTCAGTGCAGATGAATTAG GTAAGCTTCGGAGATCATCTTCGTTTGAGCTTGGGAACAATGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTT AAAGAATCTCCAAATGAGACTAAAGAGAAATCGTCAACTGCTGTCTCAAGTGTTGCAGCTGCTGGATCCTCCGCTGAGGG ATCAAATATGAACACCCAAATGGAGTCCGTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAAAGATTACAGT AA
Protein sequence (LotjaGi1g1v0720900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHFTVDTGDSLASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLILAV SDVDINRPCGLDKSTALHCAASGGAENAVEAVRLLLAAGADPNSVDANGHKPVDVIVFPPKLEHVKNSLEELLQADDSDA GGCNLRVITTSLNAYSLPLSTSPENGSPSALDLQLKSKSSDVPAFSVSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVR PCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSR RICFFAHTAEELRPLYVSTGSAVPSPRANASSAMDFAAAMSMLPGSPSSMSVMSPSAFTPPMSPSANGISHSSVAWPQPN IPALHLPGSNLQSSRLRSSLHARDIPFDDFDMLSDYDQQQLLNELACLSPRPMNSNPLNRSGRMKPLTPSNLDELFSAES SSPRYADPTLNSAVFSPTHKSAVFNQFQQQQSMLSPVNTNFSPKNAEHPFLQASFGVQTPGRMSPRNVEPISPMSSRISM LAQHEKQHQFRSLSFRELGSNSAAAAAAASANSWSKWDSPNGKLDWAVSADELGKLRRSSSFELGNNGEEPDLSWVQSLV KESPNETKEKSSTAVSSVAAAGSSAEGSNMNTQMESVDHAVLGTWLEQMQRLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 690 | 690 | 0.0 | – | |
| PANTHER | 1 | 690 | 690 | 0.0 | – | |
| SMART | 10 | 40 | 31 | 4200.0 | ||
| Gene3D | 10 | 151 | 142 | 4.0E-20 | ||
| SUPERFAMILY | 15 | 139 | 125 | 2.02E-16 | ||
| Pfam | 18 | 126 | 109 | 1.1E-10 | ||
| ProSiteProfiles | 57 | 160 | 104 | 16.361 | ||
| SMART | 57 | 87 | 31 | 0.019 | ||
| ProSiteProfiles | 92 | 127 | 36 | 11.3 | ||
| SMART | 92 | 124 | 33 | 0.0015 | ||
| Gene3D | 268 | 338 | 71 | 2.3E-6 | – | |
| SMART | 271 | 297 | 27 | 4.0E-6 | ||
| Pfam | 276 | 296 | 21 | 6.7E-5 | ||
| ProSiteProfiles | 276 | 298 | 23 | 13.582 | ||
| SMART | 306 | 329 | 24 | 33.0 | ||
| MobiDBLite | 644 | 671 | 28 | - | – | |
| MobiDBLite | 649 | 671 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi1g1v0720900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…