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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0722400 |
| Transcript ID | LotjaGi1g1v0722400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger A20 and AN1 domain stress-associated protein; TAIR: AT1G51200.1 A20/AN1-like zinc finger family protein; Swiss-Prot: sp|A2YEZ6|SAP8_ORYSI Zinc finger A20 and AN1 domain-containing stress-associated protein 8; TrEMBL-Plants: tr|I3SUN2|I3SUN2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0722400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129370924..129373950) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCAAAAAAATTGAAAATATGGTAAAATTGAGGGGCCAATTGGTAAAAGAAAAAACAACCGACTTATGCTGAATATA AAGTTCAAACAAACAGAGCAAGAGAGAAAGAAAGACAGAGAGAGAGAGAGAGTCACAGAAAGCATTGTCCAACACGATAC GACCGATTCAAACCCCTCTCTCTCTCTCTAACCTCTCCCTCTGCTCCTCCTCCGTTTAATCTCGTACCTTGTTCGAGTTA TATACACTGTTCTCTCTTTGATTTGAGGTCAGGATTATGTCTTGTTTTGTGTCTATCATTTTTTTCATTTTTTTTCGAAA TTTTATTGCCCTTTTACCTCTATCACCTTTAACACCGTCTTCTTCTTCTTGTTGTTGCAGGGAACAGTATACAACTTTCA CGATCGGTGAACCTAACCACCAAGGTGAGGGTTTCCATTTCACGTTTCTGTTGTGTTTTTTTTTTTGTTCAATTTTTCTA CAGCAACGGGTTTTTATTGGAACTTCTAATTGCTTTCTGATTGCTCCCAATTCTTAAATTTGTATAAAAAAATTGTTTTT TTGGTGTCAAAATTCGATTTTTTTGGTGGGGTTTTGGGTAGCTTGTGGTATGTGTTCATGTGTTGTGTGAATCAGTTGAT GGGGGTGTTCAAACTTGTGTTTTTCTTGCTTCCCTTGTCCATTTTCAACTTGGTTGATCTTAGTTGTGCATTGGAAGTGG AACTGTTCTGTGTGAGTTTGGTGATGCTATGATTGTTTAGTTGGGCTTTGTTTGCATGCTTGAATCACTGATGACTATTG ATTGTGTTGATGCATTTGTTGGGATTTAGTTTCTGTATGTGCTATTGTGCTTGTCCTGTGTCCATTTAGAGGGTTTTGGA GCTTGGTGTTCTTTGTTTTTTCATATGATATGATAGCACTATATTGGAAGATAGTGTCTGAGGGAGAAGATTTTCTGTCA GTTATTTGTTAATCATTCTAAACATTGAGGTGCCTGTTATGATGTCTAAAAGGCTTGGTAAACCAAGGTTTTAAATTGCG GTCGACGCAACAGTCGCGTCAGGTTGCTTTGCGGTCATTTGTATTGAGGAAATTATGAATACACATGGTTGTTGTGGCTG AAATCACGGTCTGGTTTCAGTCCAAAACCTTTGCAGACCTTCATTTAAAACCATGGCATTCACTGATGTTTTTTCATGGA GTTTCTGTGGTGTTAAGCTGCTAGTCCTTAAGAACCGGCAACAACAATCCTTAATTTTTGCAAGTATTTGAGATGTTTGT AGTTTGTCATGTTTTTCTTTTCAGAATGGTTTTTTCTTTGTGTCTGGGTATATTTTTCAGGGTCCTAGGAGTTATGGGTA GAGGGAGACCTGGAAAAACTATTGAATTACCAAATCATGAAGAGGGGGGTTTAGAGGGAAATCTATCTATGAACTTAATA AACATGATAGAGCATTGTGGCATAGTCTGATCCTTGAATTCAATGACACCTAGGTGGAAAAAGGATGATGAAAAAAATGT GAAGATATTTTTCTTAGATCATGTGGTGCCTTGCTTGCAGGTGGTCAAGAGTAATGGAATCTCATGATGAGACAGGATGC CAGGCTCCAGAGCGTCCTATTCTCTGCGTCAATAATTGTGGTTTCTTTGGAAGGGCGGCTACCATGAACATGTGTTCCAA GTGTTACAAGGACATGCTATTGAAGCAGGAGCAGGACAAGCTTGCAGCAACATCGGTTGAAAATATTGTGAACAGCTGTT CCAATGGCAATGGAAAGCAGGCCATCACTGCAGATGCTGTTAATGTACGAGTTGAACCTGTGGAGGTCAAGGCAGTCACT GCTCAGATTTCTGCGGATTCATCCTCCGGTGAGAGCTTGGAGGTGAAAGCCAAGACTGGTCCCAGCAGATGTGGCACTTG CCGGAAACGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGCAATGTCTTCTGCGCAATGCATCGCTATTCGGATAAAC ATGATTGCCCTTTTGATTATAGGGCTGTTGGTCAGGAGGCCATAGCGAAAGCCAACCCGGTCATTAAGGCAGATAAGCTT GATAAAATCTAGGCATACACTAGACTGAAGGTTAATGTATGAATCTGATGCTTACTGCCTGGGTTTTTAGGTGTCCTTTA GCTATCAAAAATGGGATATTTTCATGATTCCAAGGACATCTTTAGGGGAAATCATTCCTGTGTTTGTGATGGTCTGATGG ACTTTGGCTCATTCTGTAATTTGATTTCCTGCTTGGTCTGCATTTCTTTTTACCTCTCATTGCTTGGAAGTTATTTCCTA GATTGTCTTGTGTGAGACCTTGCTTTTAAATTGTTCATGTTTATATAGATTTTTCATGCACAAAATATGTGCAGTAAGTT TGAAGTTGCTAGCGGGACTTTTGATTATTTATATAATTCCAAGGGTATTATGACTGCGCAATAAAGCGATATGAACAAGA GAAGTAGAGAACAGTTGTGTGGATCAATCAGATTGCATACAAATTTTTGCAAGAATTTGGTGTGATACTGCATTGATCCA AAGGCCAGAGGTAAACAAGGTCTGTTGGTTAAAGCATACATCACTTGATATGTCTGATGTTAAACTCAAAGTGGATTTGC TTTAATTATTCTTTGGTTGTTAGGTGGCTTTGCTTACTTTCCTTTTAGTATCATTATCTTTGTCATTTAGGTCTATTGGT GAGTCGCATGATTGTTCTAATCAGTTCATGTTAATGGTGTGGCAAGTGGAAAAATAAACATTAGGTGGATGTATTATAGC ACAATTACCAAAGGGTTTTACGCAATTGCGGGTGTAAGTGAATAAATCTACTCAGGTAATTTAGAGGGTGCATGCCTGAA GATTCCTTCCCGTGTAGTTACATTTGGTGGTTCTAGTGTCTAATATGGTGAAATGATTATCAGATTAAGGCGTTTCTACC TTTGCTTCTCCTGCTTGGGACTTGCTTGTAGAGAGGGATTTAGGCTGTATTAAATATTTGATAGTGA
CDS sequence (LotjaGi1g1v0722400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTCATGATGAGACAGGATGCCAGGCTCCAGAGCGTCCTATTCTCTGCGTCAATAATTGTGGTTTCTTTGGAAG GGCGGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTATTGAAGCAGGAGCAGGACAAGCTTGCAGCAACAT CGGTTGAAAATATTGTGAACAGCTGTTCCAATGGCAATGGAAAGCAGGCCATCACTGCAGATGCTGTTAATGTACGAGTT GAACCTGTGGAGGTCAAGGCAGTCACTGCTCAGATTTCTGCGGATTCATCCTCCGGTGAGAGCTTGGAGGTGAAAGCCAA GACTGGTCCCAGCAGATGTGGCACTTGCCGGAAACGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGCAATGTCTTCT GCGCAATGCATCGCTATTCGGATAAACATGATTGCCCTTTTGATTATAGGGCTGTTGGTCAGGAGGCCATAGCGAAAGCC AACCCGGTCATTAAGGCAGATAAGCTTGATAAAATCTAG
Protein sequence (LotjaGi1g1v0722400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESHDETGCQAPERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAATSVENIVNSCSNGNGKQAITADAVNVRV EPVEVKAVTAQISADSSSGESLEVKAKTGPSRCGTCRKRVGLTGFSCKCGNVFCAMHRYSDKHDCPFDYRAVGQEAIAKA NPVIKADKLDKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 171 | 171 | 4.9E-85 | – | |
| PANTHER | 1 | 171 | 171 | 4.9E-85 | – | |
| ProSiteProfiles | 12 | 46 | 35 | 9.9 | ||
| SMART | 15 | 39 | 25 | 1.0E-7 | ||
| Pfam | 16 | 39 | 24 | 2.3E-12 | ||
| SUPERFAMILY | 17 | 55 | 39 | 4.99E-13 | – | |
| Gene3D | 87 | 168 | 82 | 2.4E-27 | ||
| SUPERFAMILY | 104 | 167 | 64 | 2.88E-29 | ||
| ProSiteProfiles | 110 | 153 | 44 | 12.546 | ||
| SMART | 113 | 150 | 38 | 3.2E-16 | ||
| Pfam | 113 | 149 | 37 | 3.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0722400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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