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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0722900 |
| Transcript ID | LotjaGi1g1v0722900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G57790.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P15922|PEHX_DICCH Exo-poly-alpha-D-galacturonosidase; TrEMBL-Plants: tr|V7CVX9|V7CVX9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0722900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129426742..129430728) extracted from Lotus japonicus Gifu genome v1.2.
GGGAACGTGATCTGAACAACATCCGCCACAAGAAGTAGAGAAGAGGCCTTAGGAGGAGGGAGATCCGGAACATGATTACC TAGGTAATATGTAACGAGTTGTATCAACCAAGTTGACATTCATTATCCTTTAAAATATGATATACTAGTTGCAAACAATT TACAAACATTATACACTATGATAAGAGTGTATATAGTTGTATACAAAGTTCTGGAGTAGGAGTGTAGGACACCTCTCTTT TGAACATACAAACAAAGCCTCTTTCTCCAAAAATGTTAATGGAAGAACACAAGCTACCACTCCTCTTCCAAATCACTTTC TCCTTTTTCCTTCTCACCCAATCACTCCTCGCCACGTCACACCCACCATACCCCATCCCATTAACCGTCTCCGTCTCCGA CTTCGGAGCCGCCGGCGACGGCGTCCGCTACGACACAACATCAATCCAGTCCGCCATCAACTCCTGCCCGGGCAGCTCCC CCTGCCGCGTCATCTTCCCGGCGCCGGGAAAGTACCTGACGGCGACCGTGTTTCTGAAATCCGGCGTGGTCCTGTTTGTG GAGCCCGGAGCAACCATCCTGGGCGGTCCGAGGCTGGAGGACTACCCGAGGGAGCCGTCGCGGTGGTACGTGGTGCTGGC GGAGAACGCGACGGATGTGGGGATTGATGGCGGCGGGGTGGTGGATGGGCAGGCGGAGAAGTTCGTGGTGAGGGAGGATC CGAGGAAGAACATCATGGTGAGCTGGAATCAAACTGGAGTTTGTTCGGGTGACGAATGCAGACCAAGGCTCGTCGGTTTC CTCGGTTGCAGAAACGTTAGAGTCTCCAACATTACCCTTAACCAACCTGCTTATTGGTGGTTTGTTCCTATTTCTATCCA CTATTTCATTGAATCACCTCATTTATGCTCAGTTCATTTATGCATACATGAAAATTCAAGTGCTAGTGAGTAGTGAGTAA GTCCCTGATTAGTTAAGCAATCTTGTTAGGATGCATTTCGGTAAACAACTTAGTTAATCTCTTATGGTAATAATCACTTA TCACATAAGCATTTATTCATAAGTTTATTTTAGAAGCTTCTGGATATAAATTTTAAGTAGGTATAAGCGGCGCTTATTTA TAGTTAATATGTAATAAGTTCAAAACAGCTTATAAGTTTGTCATAAGCTATTTTTATAAACTTAGGCCCCGTTTGGAAGA GCTTATTTGAGCTTATCTGATAGCATAAGCTCTTATGCCAGTGTTTGGGAGAGCTTATGCAAACAGCTTATAGTCTACCA TAAGCTGTTTGAGCTTATTTTCATAAGCTATTCAGGATAGCTTATGAAAAAGAGCTTATGCTTATCTATAGCTTATTTTC AATTTATGTCAATAAATATTTTAAAATAACTTATGAATAAGCGCTTATATCGCGCTTATGATATAAGCGCTTATGATCAT AAGCGCTTAATTAAGCTGTGTTTCCAAACGCGGCCTTACTCAAACACATGCATAAGTGTTTATGGTATAGTTATACCATC GTTTCGTGCTAGCCATTTGACTTTTGTTTGTGCATAGTGTATATGTGGTTGATTTTGATTATGATAAGTAGTAAGTTTTC AAGTACGATTAAGTGTGTGTTTGGATACGGAGTCTAGCGTAACAGAATCTCAATTCATAAGAAGAGTTTTGTTCACCCTT TACTTCAAAATGAGCACTACTTCAAAGTGAGTACTAATGTCCACTGCCAACGGATATCCAAACATAGCCTAAACTGATAT TACTTGTGGATGTCTTGCTGTAATGGGCTCAGTTGTTGATTTGGAGTTTTTTGGGTTTTATCTGTAAACAAAGGCAACAT GAGTTTTGGATAAACATGGGAAGGGAACCGGGTCCCATGACAAATACTTCTACTTCTATTATTATCATATCAGACAGCTA TCCTACTAGCCAATGGTGGTTTTTTTTTGGCCTTAAACGTCTTTGACCATAACCTATGCATTTAGATTGGTTAAGTTGTA ATTTGATTTATTATGTTATGTGTTTAAACTTTAAAGCTATTCTATTGTGTTATTTCTATAATAAAGTGGATACTTACTTG AGCCTAACAGTTTATTTGTACTAACTTGCAGCTTACACTTGGTACGGAGTGAGAACATATCCATTGAGGACATTGCAATT TATGGGGACTTCAACATACCAAACAATGATGGGATTGACATTGAGGACTCAAACAACACGGTAATCACTCGATGCCACAT TGATACAGGGGATGATGCAATCTGTCCAAAGTCATATACAGGCCCTGTTTACAACCTCACTGTCACCAACTGTTGGATTC GGTCCAAATCTTCTGCAATTAAATTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTCGTGTTTGATAATATCACTATT GTTGATTCTCACAGAGGTCTTGCATTCCAGATCCGTGATGGAGGTAACTTGGTTTGGATTCTTCTTGTTTCTCTTCCAGA TAAATCATTGAATCACAAATTTTTGCTTTGTTCTGTCTATAAATGTTTATTTTTCCTTAACTCAAAATGTTGAAAGCAAA ACAGGTATCTAAAATACTAAGTCTATGTTTGATTCTGCGTCTCAGCACGTTCAGAATCGTGTTACCTCAAGTTTCTAAAC ACACTAAAAGTTCATTATAAAACAAAACAAAAAATCTACGTAAATTAATCTTCATATTCTAAATTTATGATTGAACATTT GAACATATTTTGATGTAGCTTAGTTGAGCCTGGCTTAGTTAGAAAGAGTCACATTTATATTGAGCCTGATTAATATAGTC CTCTTAGTGAGTGTCTGGGAGCCTTTTAGGTTTTCACATTGGGGGTGAAGTGATTCTGGGAGAAGTTATTAGGAGTAGCT TTTATGAGGGAGAAGTGATTCTATGAGATTTAACCGGGATCCAAACATGTTCTGAAGTGCTTTCAACCTTCTTGTGCAGG AAATGTAAGTGGCATAGTCTTCTCCAACATAAATATCAGCACTAGATACTATGATCCATTATGGTGGGGGAGAGCGGAGC CTATCTACGTGACTACTTGCCCGCGACACTCAACCTCAAAGGAGGCTTCAATCTCAGATGTTCTTTTCATTAACATCACA GCAAATTCTGAAAATGGCATCTTCCTGGCTGGTTCCAAGAGAGGACTGTTAAGGAACTTGAGATTCGTCAACATGAACAT CACTTACAGAAGGTTCACCAGTTATGCTGGTGGCTTATTGGACTATAGGCCAGGATGCCAAGAATTGGTTAAACACAGGA CTGCAGGCATGATGATGGAACACATTGAAGGTCTTGAAGTTAAAAATGTAGAAATGAGATGGTCAAATTCAAACAATCAA CTAGACCAGTGGAATAATCCTCTGGAGTTCAAGCCATCTACTGTGAATGACATCTCTTTCTTTAATTTTAATTCTGTTTC ATCTACAAAATAGCAAATCAAGTTAGTGCGTGTTTGAATATTCTTCTACAATTGGTTCTGAAGCCATAACGAATTCTGAA GAGAAGCTTCTGTGAGTAGTTTATGGGTTTCAAAATAAATTCTGAGAAAAAAGAAGTTGATCCAAACATGCTATTAATAA CTTTGGATTTGCAGACAACAAATATCCAAAGCACATGGTTTGCTTAACCATTAAGGGAATGAAGAAAAAGTTCAAAAGAC AGGAGAAGCATTTGCTTTGTACATCAAGAAAAATAAAAAGATTGGGGATCTCATACCACTTCACTATACTGTGATTGCAT TTTATTATTCAGAAGTTTGTGATTGTAAGGACTGCAAATTGTTTATATCAAATTGTCAACATTTTCTGTCTTTCCATGAA AGAGGCCAACATTCCAGACATATTTCTTAAATGTTAATAAACTTCAGTTGATAATTTTATATTGATGCCTCACGATCTGG ATCTGTGGTGGGAAGTGTGCCTTTGATTTGTAAAATTGATATATCTTTAGTGAAACTTGAATTCCAA
CDS sequence (LotjaGi1g1v0722900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAATGGAAGAACACAAGCTACCACTCCTCTTCCAAATCACTTTCTCCTTTTTCCTTCTCACCCAATCACTCCTCGC CACGTCACACCCACCATACCCCATCCCATTAACCGTCTCCGTCTCCGACTTCGGAGCCGCCGGCGACGGCGTCCGCTACG ACACAACATCAATCCAGTCCGCCATCAACTCCTGCCCGGGCAGCTCCCCCTGCCGCGTCATCTTCCCGGCGCCGGGAAAG TACCTGACGGCGACCGTGTTTCTGAAATCCGGCGTGGTCCTGTTTGTGGAGCCCGGAGCAACCATCCTGGGCGGTCCGAG GCTGGAGGACTACCCGAGGGAGCCGTCGCGGTGGTACGTGGTGCTGGCGGAGAACGCGACGGATGTGGGGATTGATGGCG GCGGGGTGGTGGATGGGCAGGCGGAGAAGTTCGTGGTGAGGGAGGATCCGAGGAAGAACATCATGGTGAGCTGGAATCAA ACTGGAGTTTGTTCGGGTGACGAATGCAGACCAAGGCTCGTCGGTTTCCTCGGTTGCAGAAACGTTAGAGTCTCCAACAT TACCCTTAACCAACCTGCTTATTGGTGCTTACACTTGGTACGGAGTGAGAACATATCCATTGAGGACATTGCAATTTATG GGGACTTCAACATACCAAACAATGATGGGATTGACATTGAGGACTCAAACAACACGGTAATCACTCGATGCCACATTGAT ACAGGGGATGATGCAATCTGTCCAAAGTCATATACAGGCCCTGTTTACAACCTCACTGTCACCAACTGTTGGATTCGGTC CAAATCTTCTGCAATTAAATTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTCGTGTTTGATAATATCACTATTGTTG ATTCTCACAGAGGTCTTGCATTCCAGATCCGTGATGGAGGAAATGTAAGTGGCATAGTCTTCTCCAACATAAATATCAGC ACTAGATACTATGATCCATTATGGTGGGGGAGAGCGGAGCCTATCTACGTGACTACTTGCCCGCGACACTCAACCTCAAA GGAGGCTTCAATCTCAGATGTTCTTTTCATTAACATCACAGCAAATTCTGAAAATGGCATCTTCCTGGCTGGTTCCAAGA GAGGACTGTTAAGGAACTTGAGATTCGTCAACATGAACATCACTTACAGAAGGTTCACCAGTTATGCTGGTGGCTTATTG GACTATAGGCCAGGATGCCAAGAATTGGTTAAACACAGGACTGCAGGCATGATGATGGAACACATTGAAGGTCTTGAAGT TAAAAATGTAGAAATGAGATGGTCAAATTCAAACAATCAACTAGACCAGTGGAATAATCCTCTGGAGTTCAAGCCATCTA CTGTGAATGACATCTCTTTCTTTAATTTTAATTCTGTTTCATCTACAAAATAG
Protein sequence (LotjaGi1g1v0722900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMEEHKLPLLFQITFSFFLLTQSLLATSHPPYPIPLTVSVSDFGAAGDGVRYDTTSIQSAINSCPGSSPCRVIFPAPGK YLTATVFLKSGVVLFVEPGATILGGPRLEDYPREPSRWYVVLAENATDVGIDGGGVVDGQAEKFVVREDPRKNIMVSWNQ TGVCSGDECRPRLVGFLGCRNVRVSNITLNQPAYWCLHLVRSENISIEDIAIYGDFNIPNNDGIDIEDSNNTVITRCHID TGDDAICPKSYTGPVYNLTVTNCWIRSKSSAIKFGSASWFDFKHFVFDNITIVDSHRGLAFQIRDGGNVSGIVFSNINIS TRYYDPLWWGRAEPIYVTTCPRHSTSKEASISDVLFINITANSENGIFLAGSKRGLLRNLRFVNMNITYRRFTSYAGGLL DYRPGCQELVKHRTAGMMMEHIEGLEVKNVEMRWSNSNNQLDQWNNPLEFKPSTVNDISFFNFNSVSSTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| PANTHER | 21 | 465 | 445 | 7.1E-187 | – | |
| PANTHER | 21 | 465 | 445 | 7.1E-187 | – | |
| Gene3D | 22 | 397 | 376 | 6.8E-89 | ||
| Phobius | 22 | 27 | 6 | - | – | |
| SUPERFAMILY | 24 | 393 | 370 | 1.33E-74 | ||
| Phobius | 28 | 470 | 443 | - | – | |
| Pfam | 120 | 389 | 270 | 1.6E-21 | ||
| SMART | 202 | 228 | 27 | 510.0 | ||
| SMART | 229 | 250 | 22 | 680.0 | ||
| SMART | 255 | 276 | 22 | 1300.0 | ||
| SMART | 309 | 331 | 23 | 8100.0 | ||
| SMART | 346 | 371 | 26 | 2000.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0722900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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