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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0723000 |
| Transcript ID | LotjaGi1g1v0723000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|V7BF82|V7BF82_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0723000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129435048..129437602) extracted from Lotus japonicus Gifu genome v1.2.
GTCAGAATATGTTTTATTGTTAGTTATATTATTTCCTTATTTAGCAAATCACATTTATAATGTAGGAGGGGAATATCCCT GAATCATAGGGATTTAATTGTATAGGTGCTGTTATTATATTTCCTAAATTAGTATTTCAGCTTTGTATATATGGCTGATG TATTGTAACATAATTCTAAGAAATAAAATTATTCAACCCTAATATTTGAGATGGCATCAGAGCTCTCAAGTTCTGGGAGC CGCCTCTGACTGCGCAAACCAAAACCCTAGAAGACAGCCTTCATTGCTGTCAATCATCCCTTTCAAGGCAGCCTTCATTG CTGTTGATCATCCCTTTCAGAGCAGCCTTCATTGCTGTCGTGATTGTTCCTTAGTTGCTGTCCCGAATACATTCCCATTG CAATACGTTCACTGTACTGCTGCTGCCATGGGAGAACCAATTGAAGAAATAGTGGATATTGAGTCAAGGAACATTGACTC TGGGGATAATAAATCCCAAACTCATGGAGAGCTGCAGAACCTCTACACTGCCTACAGATTGAATGGGCAGAATTACTTGA AATGGTCCCAGCTTGTTCTTAGAACTTTGAAAGGTAAAGGGAAAGCTAGCCACTTGACTGAAGATGCCCCTAAAGAGGAA GATCCCAAATTTACAAAATGGGATGAAGAGGACTCTATGATCATGGCATGGCTATGGAACTCAATGATCCCAGAGATCAC TGATACTTGCATGTTTCTTAATTCTGCAAAGGAGATTTGGAATGCTATGGAGCAGACATACTCCAAAGCTAAAGATGCTG CTCAAATATATGATGTGAAGGTGAAGACTGTGGCAGCAAAACAGAGAAACAAGACCGTTACAGAGTACGCCAATCAACTC AAATCATTGTGGATGGAGTTAGACCATTATAGGGTCATTAAAGCCAAGTGCTCAGCAGATTCAGCAATGCTCAAAGAGTA TATTGAGCAGGATAGAGTCTATGATTTCCTGGTGGGGCTTAACTCTAATTTTGATCAGGTGAGAGTCCAAATCCTTGGAA AAGAAAAGGTTCCAGGAATTAATGAAGTAGTAGCTATGGTCAGAAGTGAAGAAAGCAGAAGGGGAGTAATGCTAGAAACC CCAACTGTGGAAAACTCAGCCATGATAGCTTCTGGGGCCTCGGCCATGATGGCAGACCAGAAAAAAGGGGGAATAAGCAA TACAGAGAAGAAAGGTGAAGGAGTGTGGTGTACCTACTGCAACAAGCCTCGCCACACTCGTGACAAATGTTGGAAGCTGG TTGGAAAGCCACCTAGTAGAGAGTGGGGGCCCCAAAACCGAGACAGGGAGTGGGGAAAAAAAAGGAGACAACACAAGAAA GGGAGGACAGGCGCACATAGCTGCTGGAACCAATGAAGAAAATAAAGGAGGTCTGATTCAACTTAACCCGGATGAAGTAG AGAAAATGAGATCGTTCCTCAGCAAGTTGGATAAACCAACAGGTACTTGTTCTCTCGCATGTTCAGGTATGTTTGGTGAG TTTCTTTTTCCTTTTGGACTCAATGTCTCAGATACAAACTATAACCAATACTGGATACTGGATTCTGGGGCCACTAACCA CATGACACCCCTACCTAAAAATTTCTCCTCGTACTCACCTTGCCCTAGCAATAAGAAAATATCCACAGCATATGGCACTC TCATGACTGCAGCCGGTCAAGGAGAAGTTCAAATAACCCCAACCATAACCCTAAAAAATGTCCTTCATATTCCCAAATTG TCTGTTAGTCTGATTTCCATAAAAAAACTCATAAAAGACTTATCATGTAAAGTTGTTTTTTATGACAATGGTTGTGTACT ACAGGACAAGTACTCGGGGAGGACGATTGGACATGCTAGAGAATGGAATGACCTTTATTACTTGGACAACCCGAATCTGC CTCCAGATCTACACAACAGCAGCAACTCTTTTTTCGCTGATTCAATAAAGACCAAAAGGGAGAAAATCCTCTTACATCAT TGTCGTCTTGGACATCCTTCCTTTAGAGTCATAAAATTGTTATTTCCTTCCCTTTTTAACAAATTAGAAGTGGAGAGTCT TCATTGTGAAGTGTGTGAGCTTGCTAAACACAAGCGTGTACCTTTTCCCATTAGTAATAATATGAGCACGTTTCCCTTCT ATTTAATTCATACTGATGTGTGGGGTCCCTCAAATGTCCCAAATGTTTCCGGTGCCCGTTGGTTCCTTACCTTTATAGAT GATTGCACTCGAGTTACATGGATTTTCTTACTGAAACAAAAGTCCGAAGTCAGCTCCGTGGTTCAGAATTTTTTCTCAAT GGTAAAGAATCAGTTTGGTGTTAGCATTAAGAGGATTAGATCTGATAATGCCAAAGATTACTTTAATCATGGGCTTAATT CTTTTTGTCAAAAGGAAGGCATCATTCATGAATCATCCTGTGTCAAAACACCTCAGCAAAATGGGATTGCTGAGAGGAAA AATGGACACTTACTAGACCAAACCCGAGCTCTCCTTTTTCAGCATAAGGTCCCTAAGAAATTTTGGGGTGAGGCT
CDS sequence (LotjaGi1g1v0723000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAACCAATTGAAGAAATAGTGGATATTGAGTCAAGGAACATTGACTCTGGGGATAATAAATCCCAAACTCATGG AGAGCTGCAGAACCTCTACACTGCCTACAGATTGAATGGGCAGAATTACTTGAAATGGTCCCAGCTTGTTCTTAGAACTT TGAAAGGTAAAGGGAAAGCTAGCCACTTGACTGAAGATGCCCCTAAAGAGGAAGATCCCAAATTTACAAAATGGGATGAA GAGGACTCTATGATCATGGCATGGCTATGGAACTCAATGATCCCAGAGATCACTGATACTTGCATGTTTCTTAATTCTGC AAAGGAGATTTGGAATGCTATGGAGCAGACATACTCCAAAGCTAAAGATGCTGCTCAAATATATGATGTGAAGGTGAAGA CTGTGGCAGCAAAACAGAGAAACAAGACCGTTACAGAGTACGCCAATCAACTCAAATCATTGTGGATGGAGTTAGACCAT TATAGGGTCATTAAAGCCAAGTGCTCAGCAGATTCAGCAATGCTCAAAGAGTATATTGAGCAGGATAGAGTCTATGATTT CCTGGTGGGGCTTAACTCTAATTTTGATCAGGTGAGAGTCCAAATCCTTGGAAAAGAAAAGGTTCCAGGAATTAATGAAG TAGTAGCTATGGTCAGAAGTGAAGAAAGCAGAAGGGGAGTAATGCTAGAAACCCCAACTGTGGAAAACTCAGCCATGATA GCTTCTGGGGCCTCGGCCATGATGGCAGACCAGAAAAAAGGGGGAATAAGCAATACAGAGAAGAAAGGTGAAGGAGTGTG GTGTACCTACTGCAACAAGCCTCGCCACACTCGTGACAAATGTTGGAAGCTGGTTGGAAAGCCACCTAGTAGAGAGTGGG GGCCCCAAAACCGAGACAGGGAGTGGGGAAAAAAAAGGAGACAACACAAGAAAGGGAGGACAGGCGCACATAGCTGCTGG AACCAATGA
Protein sequence (LotjaGi1g1v0723000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEPIEEIVDIESRNIDSGDNKSQTHGELQNLYTAYRLNGQNYLKWSQLVLRTLKGKGKASHLTEDAPKEEDPKFTKWDE EDSMIMAWLWNSMIPEITDTCMFLNSAKEIWNAMEQTYSKAKDAAQIYDVKVKTVAAKQRNKTVTEYANQLKSLWMELDH YRVIKAKCSADSAMLKEYIEQDRVYDFLVGLNSNFDQVRVQILGKEKVPGINEVVAMVRSEESRRGVMLETPTVENSAMI ASGASAMMADQKKGGISNTEKKGEGVWCTYCNKPRHTRDKCWKLVGKPPSREWGPQNRDREWGKKRRQHKKGRTGAHSCW NQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 311 | 296 | 5.7E-107 | – | |
| PANTHER | 16 | 311 | 296 | 5.7E-107 | – | |
| Pfam | 78 | 225 | 148 | 1.3E-9 | – | |
| MobiDBLite | 283 | 322 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0723000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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