Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0723400 |
| Transcript ID | LotjaGi1g1v0723400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G42280.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q66GR3|BH130_ARATH Transcription factor bHLH130; TrEMBL-Plants: tr|A0A151TU87|A0A151TU87_CAJCA Transcription factor bHLH130 family; Found in the gene: LotjaGi1g1v0723400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129474046..129478669) extracted from Lotus japonicus Gifu genome v1.2.
GCCTAGTTGACGTTTCTGTGTACTATCTTATTGGCTGCGCATACCGCTTATAGAAACATCAAATACTGCCTTCCCTGTCC TTCTCCCTGTCTTTCTCTCTCTTCTTCTTCCTCATCCCACCTCTCATTCACAACACAAGATCTCATTGCTTCCTCAGTTC CTCTCTCACTCTTCTTTCAAATTAGTCTGCAGCACCTGCACTAACAACTAACAAGTAACTACTCATCTTTATTTATCCAT TATCTTAAGTCCTTTTCACTCCTTGTATAAATCTGTTAAATATCTTTTGACTTTTCTGCTTCTGCATAAAACCTACCCTT CAACCCTCTCTTTCATTTTTCTGCAATCAAGGATTTTGCTACTCCTCCAAAATCTTCTCTCACAAGAAATATCCCCCCCA TAAAGATTCCCAAGCCTCTGATATCATATCAGTATCTAGTTGACTTTTCCTTTTTTTCCTGTTTTAAAATCCTTGTCAAG TGCACGGTGACAGAGTCAATCAGAAAAAAAAAAAAGCATTCAGCATTTTTTTGTGTGTGAATGGATTCGAATTCCCGTTA TCAACTCCAACCCAATTCTGGGTTCCTTCGATTTCGCTCTACCCTTAGCTCACCTCAGACGAATCTCAAACAAGGTGAAG GTGGTGCTGCTGCCAATAATGGCGGGGGCAACCAGTGGGGGGGTTTTGAACCAGAGAGGCTGGTTCCTCAATTCATGAAT TCAGGTAACACTGAGAGGAGTCACAATTACTCTGAATTCGTGAATGAGAAACTTACTAATCATAATTCATCATCATCATC ACCATCATCTCTCAGCAGAATGAATTTTCATCTTCTGAGACAGAGTAGCTCCGCTGCTGCACATTTCTCCAACATCATCT CCTTTCAGAATGGTAGGTACTCTGTACTAGTTCTGTTTTCCTGCTTGTACTGTTTTTGTTGAGTGATTTGTTCTAGACCA CTTTTTAGGCAATATTAATGTTTTCTAGTGTCCTTGGAATTTTCCTTTAAATGACATATTTTTCTGCTGCACATTTTTCC TTTAAATGGCATATGAAGTACATGCTTTATGGTGAATGAAATAAATCTGTAGTAGATAATAGTATAGCAGTAGGCCAGTA GCTAGACTAAATTCAATTGCGTGTTGGCATAAGAGTTTGTCACAATTGGGTTTGACCAACTTGATTTAAATAAATTTGAT TATAGAAAAATAAGTTCAAAGTGAAGTTTTTATTTTTATTTTTTTATTTTTAAAACAGAAAGTGAAGTTATGTTCAGATA CGTTAATGAAAAAATGATTTATGTTGGCAATGAGTGAAATTCAATCGTAAAATTTCACATTTGATTATGTTCTACGTAAA AACTATTCACTCTCTTGTTTCTAGCATAATTGATTTTGAGTCTGAAATCAATTGTTTAAAATGACTCCCAAACATCAATG TTATCATCAAGATTTTATTTTACTCTATTAGAATTGATTATAAACGGAAAGCCAAAGACAGACTGACCCCGTTTGGAAGA GCTTATTTGAGCTTATTTGATAGCATAAGCTCTTATGTCAGTGTTTGAGAGAGCTTATGCAAACAACTTATGACTTACCA TAAGCTGTTTTGAGCTTATTTTCACAAGCTATTCAGGATAGCTTATGAAAAAGAGCTTATGCTTATATATAGCTTATTTT CAATTTATTTTAATAAATATTTTAAAATAGCTTATGAATAAGCACTTATGTGATAAGCGCTTATGACCATAAGCGCTTAA TTAAGCTGTGTTTCCAAACAGGGCCTAAATGTTTTAGCTTATGGAAGAGGCTTATAATGGTCTTATGGCATAAACCTTTA AATAGGTGAATGATGAACATATAAAAATAAACTGATTTATCCATAAACTCTTTTTCATCTATTTTTATAAGTTTCTCAAA GAATTTTATGACATAGATGTTTGATTAAGCTTGGTAGATAAGCAGATTGAAGAAGCCTAATTAAGTTGTTGACTCAGTAT ATGCCATTAGTAATGATATGACTAAGGAAGATTGATATTGAACCATTGATTACCAACTTGAAATTTTTAGAGTTATATTT ATACCATGGAGACATTTTTATCCGATTGTTGGCTGCTAAAAATTTTGAGGGCTGAAATTGCCGTTCATATGGAAATTTCA CTCTTTTAAAAGGTTTCATCTATCTTTCATGTGGACACAAATTGGATAATAGATCAATTTTTCACAGACAATAATGTACA TTTGCAAAGTGCAGGGCATGATACTACTAAAGGTGTTGGAAACTATGGTGGGGTGAATGACAGTGATGGTGAACAAAGTC TATCTATGAATAGATTGAATAACCAAATCAGCAATGGTGATACTCGTAATAGTGGCCTTAGATTCCCTTATGATTCATGG AATGAGACCTCATTCTTCTCAGATAAACACATTGACTCCAACAAAGAGAGAAATGGTGATGATAAGTTACTCTCTGATGC TCAGGTATATATGATGCTCAAATTTTCTTATTTTCTTATTCAGTTCCATTCCTTGTTGTTATAATACATAAGCTGTTAAA CTCAGAATGGAGAGCTAGGAAATCAAGTTCACACACTGACTCATCACCTGAGTTTGCCTTTACCGAGAAAGTCATCACAG TTGTTTGCTATGGACAATTTGCTTGAGTTCACAGATTCTGTTCCTACCAATGTCAGAGCAAAGAGAGGCTTTGCTACTCA TCCTCGAAGCATTGCCGAAAGGGTAAGGAATTAATAAGGATGTTGTTCTATACTTGGTCCTTTCCTTTGCCAAAAACTAT GAGAATTAGATTTTTATGTTGAATTCATGAGCTAATGTTTGAAAAATTGTTCTAACATGTGTAATTATCTTCAGGTGAGA AGAACTAGGATCAGTGAACGAATAAGGAAATTGCAAGAGCTTGTTCCAAATCTTGACAAGGTTTGATTCATCAATAATTG ATTTGACCTTGGTATATAGTATATGTTGTGTTTGGGAAGTTTAACATTTGTTAATTATTGGCAGCAAACTAGCACAGCAG AAATGTTGGACTTGGCTGCAGTGTACATTAATGATCTTCAGAAACAATTCAAGGTACTTAAGGAGATAAACTAACTTAGA TGCCATGCTATTAATGCTCTTTTATGAGTTTTCCCTAACGTTTTTAATTGCTTTCTGCAGACTCTAAGTGAAAAACGAGC TAAATGCAAATGTACAAGAATGCACACATCAGAATCAAATCAAATTGCTTGAGTTTCTTTTGTACAGGTAATAAAGGAAG TGTGTAGACATGGATAGGATCCGTTCATCGTGTCAAATCTGCAAGTGCTAAAAACTAAGTAGAAAAAAACTGAAAAAATA TGATATTTTCTTTATTGAGTGTAACACAGATAGCTAGCATTTAGCTTTTTGCTACAATATTGAGGTTCTTTAAGGTAACT GGGGATTTCAATCACATAAACAATAAATCAAATAGATCAATGGTAGAGGGTTGCATGCTTAATGAGCTTCTATAAATACA TCCTTTATGGGCATCAAGTTACTAGGCCAAATATAATTAGTTAATATTATTTCTATGTTTATTTCTAGTTTGTTATTTAG ATCATGTTCTAGAGTATTCTACTTTCTATCATGGTGCCACATGTAAGGTCACCTTTCATCCCTTAGAGTGGATAGTTAGT ATAAGTTGTATGGTTTCCATTATGAAATATTAACAAGAAAAAATTAATAGAGACATTATGCAATTTTGTATACTAGAACT TTAATGTATTCATTTTGATATTATGTTCTTTTTATCCCCCTGCAATTCTGAAAAAAATTACAGAAGAATTGATGCATTGC AGACTCAGCAGTTGAGATATGTAAAGAGTTATGCCTATATACTCCTTAAATAGTTCCTCACTTTGTGTGATTGTGGCTCA ATTTAGTAAAATTATCATTGTTTGAGAATGGTATTTATTTATTTATTTAAGCTACAAGTACCATCCACGGAGACAATTAT GTTCGAGTTGAGTAGAATCATTATGAGCGACAAAACTCTCTCAACTAAGTATTTAAGACAACCACATTCATAGAGACTCA ATATGAGATTTATGTTTAAGGACAACGAAAATAGTCTTTTGAAGCAATGAAATAAGAAAAGTACTTTGGAAGTTGATCCA ACTCGAAATTCTTCATTAAGTTGTTTGACTTAAATAGAGGAAAAAAATGAAAATCAAATTTGAAGAAATATTCAATTTTC TTATTGAGTACTACTATCGTACAATTAAAATGAAATAATAGTCTCTTTCTTTTAATGAATAAAAGTTGTAAACGTAAGAG GTAAAAAAACATGACACCCTAAAAGGCGGAGAATGTTCGTCGGTGCAATGAAAAGTTACAAATAAGAAGCGACATCTGAC AAGATTTCTAGGCGAATGAGCAAACGTTTAACTAATCTCACACCTAAATGAAATATATTATGAGAGTTATAAGATTTGAT AGATACTACTTAAGACAGTAATGTGCATCCTTTTTACGGGAGCCCATATCAGAGAAAGTCAAATGTTGAGTGTTCTTGCT TTGGATAAATATAAGATGAGTGACTTCCCAATAAGCTTTCCCAAAGAGCGCACAAGGAGAGACA
CDS sequence (LotjaGi1g1v0723400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGAATTCCCGTTATCAACTCCAACCCAATTCTGGGTTCCTTCGATTTCGCTCTACCCTTAGCTCACCTCAGAC GAATCTCAAACAAGGTGAAGGTGGTGCTGCTGCCAATAATGGCGGGGGCAACCAGTGGGGGGGTTTTGAACCAGAGAGGC TGGTTCCTCAATTCATGAATTCAGGTAACACTGAGAGGAGTCACAATTACTCTGAATTCGTGAATGAGAAACTTACTAAT CATAATTCATCATCATCATCACCATCATCTCTCAGCAGAATGAATTTTCATCTTCTGAGACAGAGTAGCTCCGCTGCTGC ACATTTCTCCAACATCATCTCCTTTCAGAATGGGCATGATACTACTAAAGGTGTTGGAAACTATGGTGGGGTGAATGACA GTGATGGTGAACAAAGTCTATCTATGAATAGATTGAATAACCAAATCAGCAATGGTGATACTCGTAATAGTGGCCTTAGA TTCCCTTATGATTCATGGAATGAGACCTCATTCTTCTCAGATAAACACATTGACTCCAACAAAGAGAGAAATGGTGATGA TAAGTTACTCTCTGATGCTCAGAATGGAGAGCTAGGAAATCAAGTTCACACACTGACTCATCACCTGAGTTTGCCTTTAC CGAGAAAGTCATCACAGTTGTTTGCTATGGACAATTTGCTTGAGTTCACAGATTCTGTTCCTACCAATGTCAGAGCAAAG AGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGGAAATTGCA AGAGCTTGTTCCAAATCTTGACAAGCAAACTAGCACAGCAGAAATGTTGGACTTGGCTGCAGTGTACATTAATGATCTTC AGAAACAATTCAAGACTCTAAGTGAAAAACGAGCTAAATGCAAATGTACAAGAATGCACACATCAGAATCAAATCAAATT GCTTGA
Protein sequence (LotjaGi1g1v0723400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSNSRYQLQPNSGFLRFRSTLSSPQTNLKQGEGGAAANNGGGNQWGGFEPERLVPQFMNSGNTERSHNYSEFVNEKLTN HNSSSSSPSSLSRMNFHLLRQSSSAAAHFSNIISFQNGHDTTKGVGNYGGVNDSDGEQSLSMNRLNNQISNGDTRNSGLR FPYDSWNETSFFSDKHIDSNKERNGDDKLLSDAQNGELGNQVHTLTHHLSLPLPRKSSQLFAMDNLLEFTDSVPTNVRAK RGFATHPRSIAERVRRTRISERIRKLQELVPNLDKQTSTAEMLDLAAVYINDLQKQFKTLSEKRAKCKCTRMHTSESNQI A
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 24 | 45 | 22 | - | – | |
| PANTHER | 143 | 310 | 168 | 7.8E-67 | – | |
| PANTHER | 143 | 310 | 168 | 7.8E-67 | – | |
| ProSiteProfiles | 243 | 293 | 51 | 14.373 | ||
| Gene3D | 245 | 315 | 71 | 9.7E-12 | ||
| SUPERFAMILY | 246 | 310 | 65 | 4.58E-15 | ||
| CDD | 247 | 296 | 50 | 5.53395E-10 | ||
| Pfam | 249 | 294 | 46 | 2.3E-8 | ||
| SMART | 249 | 299 | 51 | 4.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0723400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…