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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0724400 |
| Transcript ID | LotjaGi1g1v0724400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2 calcium/lipid-binding and GRAM domain protein; TAIR: AT3G57880.1 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; Swiss-Prot: sp|Q9FL59|FTIP1_ARATH FT-interacting protein 1; TrEMBL-Plants: tr|V7CZG0|V7CZG0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0724400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129567880..129570300) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTGTTTTTAATTCAAAACACTGTTCCTAAGCCTAAGACTTGAGCATTCAACATTTGAAACTGTTTTGTTCTAGCTTC CATTATGCAGAAGATGCAGAGACCGCCGCCGGAAGATTTTCTGTTGAAGGAGACCAAGCCCCACCTTGGAGGGGGGAAGG TCTCCGGTGACAAGCATACTAGCACCTATGATCTTGTTGAGCAAATGCAGTACCTTTATGTGAGGGTTGTGAAGGCTAAG GATTTGCCTTCCAAGGATGTCACTGGAAGCTGTGATCCTTATGTTGAAGTCAAGCTGGGAAACTACAAAGGCACAACCCG GCACTTTGAGAAGAAGACTAATCCTGAATGGAGCCAGGTTTTCGCTTTCTCCAAGGACAGGATTCAGGCTTCAGTGCTTG AGGTTACTGTGAAAGATAAGGATTTCGTGAAGGATGACTTCATTGGTCGTGTTTGGTTTGACCTCAATGAGATCCCAAAG AGGGTTCCGCCTGACAGCCCTCTCGCGCCGCAGTGGTATAGGCTGGAGGAGAGAAAGGGCGATAAGGCGAGGGGGGAGCT GATGCTTGCTGTTTGGATGGGGACACAAGCTGATGAAGCGTTTCCTGAGGCGTGGCACTCGGATGCTGCAACAGTTAGTG GGACTGATGCTCTTGCTAACATTCGGTCGAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAG GCACAGGACTTGCAGCCAAGTGACAAGGGAAGATTCCCGGAGGTTTTTGTGAAGGCTATTCTGGGAAATCAGACCTTGAG GACCAGAATCTCTCAGAGCAGGACTATCAATCCAATGTGGAATGAGGATTTGATGTTTGTCGCTGCGGAACCATTTGAGG AGCCGCTGATTTTGAGCGTGGAAGACAGAGTTGCCCCTAACAAAGAGGAAATGCTGGGAAGGTGCGCAATTCCTTTACAC CTAATGGACAGGAGATTGGATCACAAACCTGTGAATACTAGATGGTTTAATCTTGAGAAGCATGTTATTATCATGGAAGG GGAAAAGAAGAAGGAAATCAAGTTTGCGAGCAGGATTCATATGAGGGTCTGTCTCGAAGGTGGTTATCATGTTTTGGATG AATCAACTCACTACAGCAGTGATCTTCGCCCAACTGCAAAACAGCTCTGGAAGTCCAGCATTGGAGTTCTTGAATTGGGG ATATTGAATGCTCAGGGTTTGATGCCAATGAAGACAAAAGATGGGAGGGGGACGACTGATGCTTATTGTGTAGCGAAATA TGGGCAGAAGTGGGTGCGAACGAGGACCATCATTGATAGCTTTACACCGAGGTGGAATGAGCAGTACACTTGGGAGGTCT TTGATCCTTGCACTGTCATTACACTTGGTGTATTTGATAACTGTCATTTGCACAATGGCGACAAGCCTGGAGGGGCGAAA GATTCAAGAATTGGGAAGGTGCGAATCCGTCTTTCCACACTTGAGACTGATCGAGTCTATACACATTCCTATCCTCTGCT AGTCCTTCATCCAAATGGGGTGAAGAAAATGGGTGAGATTCACTTGGCTGTAAGGTTTACTTGTTCTTCTTTGCTTAACA TGATGCACATGTATTCACATCCCTTGTTGCCAAAGATGCATTACATTCACCCATTGACTGTAAGCCAGCTTGACAGCTTG AGGCATCAAGCTACTCAGATTGTGTCAATGAGACTGAGCCGCGCCGAGCCGCCATTGAGAAAGGAGATAGTGGAATACAT GCTGGATGTGGGTTCCCACATGTGGAGCATGAGACGAAGCAAGGCCAATTTCTTCAGAATCATGGGAGTTTTGAGTGGAC TAATTGCTGTAGGGAAATGGTTTGATCAGATCTGTAACTGGAAAAATCCGATCACAACGGTTCTGATCCATATTCTGTTT ATAATACTGGTCATGTACCCTGAGCTTATCTTACCCACAATATTCCTTTACCTCTTCTTGATTGGAGTTTGGTACTACAG ATGGAGGCCAAGGCACCCTCCTCACATGGACACACGCCTCTCGCATGCGGATTCTGCGCACCCAGATGAGCTTGATGAGG AGTTCGACACATTCCCTACCAGCAGGCCTTCTGATATTGTGAGGATGAGATACGACAGGCTTAGGAGCATTGCTGGGAGG ATTCAGACTGTGGTTGGAGATTTGGCCACTCAAGGGGAGAGGTTGCAGTCTTTGCTCAGCTGGAGAGATCCAAGAGCCAC TGCACTGTTTGTGATTTTCTGTTTGGTTGCTGCCATTGTTCTCTATGTCACACCATTCCAAGTTGTGGCACTTCTCACTG GAATTTATGTGTTGCGACATCCGAGGTTCCGCCATAAGCTTCCTTCTGTGCCGCTGAATTTCTTCAGGAGGCTGCCTGCA AGAACTGACTGCATGCTTTGA
CDS sequence (LotjaGi1g1v0724400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAGATGCAGAGACCGCCGCCGGAAGATTTTCTGTTGAAGGAGACCAAGCCCCACCTTGGAGGGGGGAAGGTCTC CGGTGACAAGCATACTAGCACCTATGATCTTGTTGAGCAAATGCAGTACCTTTATGTGAGGGTTGTGAAGGCTAAGGATT TGCCTTCCAAGGATGTCACTGGAAGCTGTGATCCTTATGTTGAAGTCAAGCTGGGAAACTACAAAGGCACAACCCGGCAC TTTGAGAAGAAGACTAATCCTGAATGGAGCCAGGTTTTCGCTTTCTCCAAGGACAGGATTCAGGCTTCAGTGCTTGAGGT TACTGTGAAAGATAAGGATTTCGTGAAGGATGACTTCATTGGTCGTGTTTGGTTTGACCTCAATGAGATCCCAAAGAGGG TTCCGCCTGACAGCCCTCTCGCGCCGCAGTGGTATAGGCTGGAGGAGAGAAAGGGCGATAAGGCGAGGGGGGAGCTGATG CTTGCTGTTTGGATGGGGACACAAGCTGATGAAGCGTTTCCTGAGGCGTGGCACTCGGATGCTGCAACAGTTAGTGGGAC TGATGCTCTTGCTAACATTCGGTCGAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCAC AGGACTTGCAGCCAAGTGACAAGGGAAGATTCCCGGAGGTTTTTGTGAAGGCTATTCTGGGAAATCAGACCTTGAGGACC AGAATCTCTCAGAGCAGGACTATCAATCCAATGTGGAATGAGGATTTGATGTTTGTCGCTGCGGAACCATTTGAGGAGCC GCTGATTTTGAGCGTGGAAGACAGAGTTGCCCCTAACAAAGAGGAAATGCTGGGAAGGTGCGCAATTCCTTTACACCTAA TGGACAGGAGATTGGATCACAAACCTGTGAATACTAGATGGTTTAATCTTGAGAAGCATGTTATTATCATGGAAGGGGAA AAGAAGAAGGAAATCAAGTTTGCGAGCAGGATTCATATGAGGGTCTGTCTCGAAGGTGGTTATCATGTTTTGGATGAATC AACTCACTACAGCAGTGATCTTCGCCCAACTGCAAAACAGCTCTGGAAGTCCAGCATTGGAGTTCTTGAATTGGGGATAT TGAATGCTCAGGGTTTGATGCCAATGAAGACAAAAGATGGGAGGGGGACGACTGATGCTTATTGTGTAGCGAAATATGGG CAGAAGTGGGTGCGAACGAGGACCATCATTGATAGCTTTACACCGAGGTGGAATGAGCAGTACACTTGGGAGGTCTTTGA TCCTTGCACTGTCATTACACTTGGTGTATTTGATAACTGTCATTTGCACAATGGCGACAAGCCTGGAGGGGCGAAAGATT CAAGAATTGGGAAGGTGCGAATCCGTCTTTCCACACTTGAGACTGATCGAGTCTATACACATTCCTATCCTCTGCTAGTC CTTCATCCAAATGGGGTGAAGAAAATGGGTGAGATTCACTTGGCTGTAAGGTTTACTTGTTCTTCTTTGCTTAACATGAT GCACATGTATTCACATCCCTTGTTGCCAAAGATGCATTACATTCACCCATTGACTGTAAGCCAGCTTGACAGCTTGAGGC ATCAAGCTACTCAGATTGTGTCAATGAGACTGAGCCGCGCCGAGCCGCCATTGAGAAAGGAGATAGTGGAATACATGCTG GATGTGGGTTCCCACATGTGGAGCATGAGACGAAGCAAGGCCAATTTCTTCAGAATCATGGGAGTTTTGAGTGGACTAAT TGCTGTAGGGAAATGGTTTGATCAGATCTGTAACTGGAAAAATCCGATCACAACGGTTCTGATCCATATTCTGTTTATAA TACTGGTCATGTACCCTGAGCTTATCTTACCCACAATATTCCTTTACCTCTTCTTGATTGGAGTTTGGTACTACAGATGG AGGCCAAGGCACCCTCCTCACATGGACACACGCCTCTCGCATGCGGATTCTGCGCACCCAGATGAGCTTGATGAGGAGTT CGACACATTCCCTACCAGCAGGCCTTCTGATATTGTGAGGATGAGATACGACAGGCTTAGGAGCATTGCTGGGAGGATTC AGACTGTGGTTGGAGATTTGGCCACTCAAGGGGAGAGGTTGCAGTCTTTGCTCAGCTGGAGAGATCCAAGAGCCACTGCA CTGTTTGTGATTTTCTGTTTGGTTGCTGCCATTGTTCTCTATGTCACACCATTCCAAGTTGTGGCACTTCTCACTGGAAT TTATGTGTTGCGACATCCGAGGTTCCGCCATAAGCTTCCTTCTGTGCCGCTGAATTTCTTCAGGAGGCTGCCTGCAAGAA CTGACTGCATGCTTTGA
Protein sequence (LotjaGi1g1v0724400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKMQRPPPEDFLLKETKPHLGGGKVSGDKHTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYVEVKLGNYKGTTRH FEKKTNPEWSQVFAFSKDRIQASVLEVTVKDKDFVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEERKGDKARGELM LAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRFPEVFVKAILGNQTLRT RISQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEMLGRCAIPLHLMDRRLDHKPVNTRWFNLEKHVIIMEGE KKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYG QKWVRTRTIIDSFTPRWNEQYTWEVFDPCTVITLGVFDNCHLHNGDKPGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLV LHPNGVKKMGEIHLAVRFTCSSLLNMMHMYSHPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEIVEYML DVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRW RPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATA LFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 575 | 575 | - | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 4 | 778 | 775 | 0.0 | – | |
| PANTHER | 4 | 778 | 775 | 0.0 | – | |
| MobiDBLite | 9 | 25 | 17 | - | – | |
| Gene3D | 37 | 184 | 148 | 1.3E-31 | ||
| Pfam | 43 | 135 | 93 | 2.6E-23 | ||
| SMART | 43 | 139 | 97 | 1.3E-19 | ||
| SUPERFAMILY | 43 | 180 | 138 | 1.71E-36 | – | |
| CDD | 43 | 167 | 125 | 3.30671E-73 | – | |
| ProSiteProfiles | 44 | 124 | 81 | 15.503 | ||
| Gene3D | 191 | 335 | 145 | 1.9E-22 | ||
| SUPERFAMILY | 204 | 358 | 155 | 9.98E-31 | – | |
| Pfam | 204 | 310 | 107 | 2.6E-19 | ||
| SMART | 205 | 303 | 99 | 3.8E-10 | ||
| CDD | 205 | 356 | 152 | 6.15089E-91 | – | |
| ProSiteProfiles | 206 | 288 | 83 | 12.81 | ||
| Gene3D | 352 | 500 | 149 | 3.8E-25 | ||
| SUPERFAMILY | 367 | 507 | 141 | 3.12E-28 | – | |
| Pfam | 367 | 478 | 112 | 2.9E-23 | ||
| CDD | 368 | 495 | 128 | 2.82249E-70 | – | |
| SMART | 368 | 475 | 108 | 2.7E-13 | ||
| ProSiteProfiles | 369 | 460 | 92 | 9.938 | ||
| TMHMM | 576 | 593 | 18 | - | – | |
| Phobius | 576 | 593 | 18 | - | – | |
| Phobius | 594 | 598 | 5 | - | – | |
| Phobius | 599 | 616 | 18 | - | – | |
| TMHMM | 606 | 638 | 33 | - | – | |
| Phobius | 617 | 620 | 4 | - | – | |
| Phobius | 621 | 638 | 18 | - | – | |
| Pfam | 623 | 778 | 156 | 3.5E-82 | ||
| Phobius | 639 | 719 | 81 | - | – | |
| TMHMM | 719 | 750 | 32 | - | – | |
| Phobius | 720 | 750 | 31 | - | – | |
| Phobius | 751 | 778 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0724400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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