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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0724700 |
| Transcript ID | LotjaGi1g1v0724700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhodanese/cell cycle control phosphatase superfamily protein; TAIR: AT2G42220.1 Rhodanese/Cell cycle control phosphatase superfamily protein; Swiss-Prot: sp|O48529|STR9_ARATH Rhodanese-like domain-containing protein 9, chloroplastic; TrEMBL-Plants: tr|I3S806|I3S806_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0724700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129595866..129599743) extracted from Lotus japonicus Gifu genome v1.2.
AAGCCATTGCTGATGCCAAATTTCATGGCCCACTAAATTATACCATTGGCTAAGTTGTGTTAAGCTTTGAAAGCCTAGTT GTCATGGAGGGACAAGAATGACACACAAATTCTAAGTTCTAACTATGGCAGGGACTGGTTTCCACACTTCCTGTCTAAGT CTCTCCTCCTCCAGGTAACTCATCTTAACTTTCAACTTTCCTTTAACATGTTAACTTTCTTTTCAATTTTTGCCTTATAA ATTAGATATTTGTTGAAAACAATTAATGAAGGGGGGAGAAAAAGCTTAGTTAATGTTTAAAAATCTACTTGTACATGATT GTGAGGGATTAAGGTTGTGTTTTCAGCAATTTAGGGACATGTTGGTTGGTATTAAAAACTCACAATGCAAGGGCCCTGCC AGGGAAACTACCTGGAAGGAGAAGCTTGACATTGAAAGCAGAAGTGAAGTTTGTAAATGCTGAACAAGCCAAGGAGCTCA TAGCAGTGGATGGATATAGTGTTCTGGACGTGCGGGACATAACTCAGTTTGAGCGAGCTCACATTAAATCATGCTATCAT GTGCCTCTTTTTGTTGAAAATAAAGACAATGATCCAGGTATATATAATATATGGAATTTCTTCTTCCAAAAGAATTTATG TGCATTTTTTTTTTCCTTTTCTATTGTTCTTTTCTTCACCTCATTCACTCACTTTCTGTAGGTACAATCATAAAAAGGAC TCTGCACAATAATTTTTCTGGGTTGTTCTATGGGTTACCATTCACAAAGCCAAATCCTGAGTTTGTACAATCTGTCAAGA GCCAGATTCCGCCTGAAAGTAAAGTCTTGGTTGTATGTCAGGAAGGACTGAGGTTAGTTTATGATTTATTAGCAATTTTG ATTGCTAATTGTACTTAACTGTTCTTGATCATATGTTGAGAGGAAGCTTACATTGATATTTTCAGTCCCTTAATCTGCCA TCTTAGGACATGGAATCCCAACTCTGCTTTGGATCATTTATTTTTTGTTTGTGATTGGCTTCCAAAATTATAGTTTCACA ATATCAGAGAGCGTTTTGCATGTACTGTAGCTTGGAGAGAAAAAACTGATTGAGAAGAGTGTTGGTGATAAAGAATCATT TTTTGGGGGTTTTAAAATAACTTAACTTCTTGGGAGGTTTGGTTTTTGACAGAGAGTCATGTTAAATATTTCTTGCATTG TGTGCTTAGAGAAGTCATATTTTCAAACCTTATATTTTGGAGAGTTTGGACTACAGTATTGTGTAGTTTCAAGCAAACTC TCCCAACACTTTCAATCTTTTCCTTTTTGTTATTATCTATCTTCAAGTTACCAAACTCCCCTTCAGTTTTCCAAGTGTCA AACATTGCTTGGTTTTAGCAAATCTGCATTGGGACTGCAGAATCCATCACCCATTTTGATTTAGTAACCTTACTGATTGC TAAGAACACATCATCTTTTGTGGTTCTAACCATGTTGCTTTGGGAGTTATCATTCTTCTTAATCTCTTTCAATTTCTTCA AGTCCTTCTCTTTTGTGTACATTTAGCTTGTATACGTTGCTCGTCTCCCAACAATAGTGATACTCCTCACTCATATCTCT TCATCACAAATTGACTCTTTGATTGGCTCTTCCCTTACTCAAGCTCCTTCGCAGCTAACATACCATCTTTGTCATTAATA TTCGCTCATTTTTCATTGTATTTATAATTTTCTCAAATGACTGCAATCAAGTCATTCAATTTCAATGGTGCCCTCCCTAT AAGTCATGTTTGAACTAGAGGCTTGTAGGACTTAATTAAGCCAACAATAGCAGCGCCTACTTCTCTTGAGAGATTTTATC GTCTGTGTTCAATAGTTGGCATACTAGCTGGTTGAACACATTGATATGGTTATGGAATGTTCCTCCTTATTTCATGTTCA TTTAATGTAACTCCACCTTCAAACCAAGTTAAATGGTTAGCAACTTAGATGCATAGAAGTTCTCAAGCTTCTTGCACACG GCTTTTCGGTGGTGTCTCATGTAGAGTAGTGAGAGTGCCTCTCGTGAGTATGTTATTATTCCTTGTGACTATTGGGTGGG GTACTCGTGTTTGCAGGGTGGTACATATGTTCGGGCAAGTTTTACAAGTTTTCGTAGAACTTGTAAACTTATTTTGAGAG AGTGAATATTTTCATTGAAGTGTTTTCATGGATGTAAGTTAATAGTACCTAAGTGTGTTAATAGAGCTTAATCAGAAAGC TATTAATTAAGCTATACTGGTGGAGAATCCTGTAACCATGAGTGCAAATAACAGGAGTATAATCCGAAGGAAGGCCGTGA ATACATTCTGATTAGTTCTTGTTCTTGAGATCAAGAAAAGGAGTTACAAAGAATCCACAAGCCATACTCTTGAATGCCTC AACTCTTCAAAAGACTCCTTTCTATGGTGTTTGAGTATGCCTTCTTCTAAGAATGGTTAAGTTGGATATAAATCTCATCA CCTTTTTGTAACACTGTTGGCATCGTTTTATGAATTTACTTCTTGAATTTCATCATTGTATTTGAGGTGTGAAGGAATCC AGAACTCCAATAGAAGCAACTTGTCAGACAAGTGCCTTTTTGTCAGTAACATATATAGTCCCACATCGTGCAGAATTGAA CTAATAAGATGGTTTATATAACCAGAACATGACATGATTGGTCACGACCTTACTTGAACAGGATCTGTTCTATAGGCTCG TACAACTGTATCCTTGAGTTCTAAGGAGACAGGAACCAAAGTCTGGTGGATGAATTATGGCCATGAGATCAGAGCGTGAT TAATGGCCTTAATGAGCTTCTGTTTCAGGGTCTCATCTTGGGCAATAGAGGATCGTTCTTGGTTAGCCTTTGCTGACTGA GATGGTCTCATGGCTTTCTGACAGACTAAATATCTTTTTTTCTCAGTTTTTGTAAATTATATGAGCCAACGTTGAGATTT CTGAGCACACATTGAGATTTCTGAATCTAAAATTTGGAGTTTTTTACCCCTTCTTTTTGTCAAGGTCTACTGCAGCTGCA GATAGGTTAGAGAAAGCTGGTTTCGAAGATGTAGCATGCATAACTTCTGGCCTTCAATCTGTGAAACCAGGTTTGATGAT GCATTGGCTTTTTTCTTTTAAATTACTGTTTATTTCTTAGGTTAAGAGTTTTAGTATTTCCATTTTGTAGGAACATTTGA TACTGTTGGCTCCAAGGAGTTGCAGGATGCTGGCAAAGCGGGTTTGGTGACGATCCAAGGAAAAATTTCAACTGTGTTGG GAACAGTTCTTGTTTGTATGTTTCTGTTTTTGGTGTTTTTGTTTGTAAGTTTCTAATATCCTTTGTCACAATTACTGAAG ATAATATTGAATCTTCTTTGTTTTATGAAATTTTCAGGTGCATATCTATTTATTACCTTTTTTCCTGATCAAGCAGAGAA GCTGTTCCAATTGGTCCCTGCAGGCTAACCCCAAATATTACATTCATTGTTTTTCCTTCTCATTATGCATTTGGCAAAAT TGAGAAATGTGAGATTAGGATTGAGGAACATAAAAACATGAAATGTGAATGGACTCTGATAGAATGGAAGAGCTAGTAAT GCCAGTAAGGCTATAATGTTCAAAACAAATTGTAATCCCACTGTGGCAGTGGTAGTATTCTCTATTAAGCAATGCGTACG CCCATTTCCGAATGTTCATATCAGTTATTTTGAATGTACTTGCTAGAACACTTGCAAGATATCAGAACCTGTTAGATTGT TTTCATCAACATCTATACTAGTACTTGTGTAGTTTGGCTTCAAAAATAGCGTTTTCACAGGTTTCCTTCCTGTGAAAAAA GAACATTCACATGTCTATTTTCAGATTTTGTGAGAGCA
CDS sequence (LotjaGi1g1v0724700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGGACTGGTTTCCACACTTCCTGTCTAAGTCTCTCCTCCTCCAGCAATTTAGGGACATGTTGGTTGGTATTAAA AACTCACAATGCAAGGGCCCTGCCAGGGAAACTACCTGGAAGGAGAAGCTTGACATTGAAAGCAGAAGTGAAGTTTGTAA ATGCTGAACAAGCCAAGGAGCTCATAGCAGTGGATGGATATAGTGTTCTGGACGTGCGGGACATAACTCAGTTTGAGCGA GCTCACATTAAATCATGCTATCATGTGCCTCTTTTTGTTGAAAATAAAGACAATGATCCAGGTACAATCATAAAAAGGAC TCTGCACAATAATTTTTCTGGGTTGTTCTATGGGTTACCATTCACAAAGCCAAATCCTGAGTTTGTACAATCTGTCAAGA GCCAGATTCCGCCTGAAAGTAAAGTCTTGGTTGTATGTCAGGAAGGACTGAGGTCTACTGCAGCTGCAGATAGGTTAGAG AAAGCTGGTTTCGAAGATGTAGCATGCATAACTTCTGGCCTTCAATCTGTGAAACCAGGAACATTTGATACTGTTGGCTC CAAGGAGTTGCAGGATGCTGGCAAAGCGGGTTTGGTGACGATCCAAGGAAAAATTTCAACTGTGTTGGGAACAGTTCTTG TTTGTGCATATCTATTTATTACCTTTTTTCCTGATCAAGCAGAGAAGCTGTTCCAATTGGTCCCTGCAGGCTAA
Protein sequence (LotjaGi1g1v0724700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGTGFHTSCLSLSSSSNLGTCWLVLKTHNARALPGKLPGRRSLTLKAEVKFVNAEQAKELIAVDGYSVLDVRDITQFER AHIKSCYHVPLFVENKDNDPGTIIKRTLHNNFSGLFYGLPFTKPNPEFVQSVKSQIPPESKVLVVCQEGLRSTAAADRLE KAGFEDVACITSGLQSVKPGTFDTVGSKELQDAGKAGLVTIQGKISTVLGTVLVCAYLFITFFPDQAEKLFQLVPAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 236 | 236 | 1.4E-120 | – | |
| Phobius | 1 | 204 | 204 | - | – | |
| SUPERFAMILY | 47 | 175 | 129 | 1.57E-17 | ||
| Gene3D | 51 | 180 | 130 | 2.2E-20 | ||
| SMART | 53 | 183 | 131 | 4.2E-15 | ||
| Pfam | 55 | 177 | 123 | 1.2E-9 | ||
| CDD | 57 | 178 | 122 | 1.02296E-14 | – | |
| ProSiteProfiles | 63 | 186 | 124 | 13.718 | ||
| TMHMM | 205 | 224 | 20 | - | – | |
| Phobius | 205 | 223 | 19 | - | – | |
| Phobius | 224 | 237 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0724700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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